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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059078 ID=TCONS_00059078|Name=TCONS_00059078|organism=Clytia hemisphaerica|type=transcript|length=1346bp
GTTCAAGCCTGTCTGAAGGGtattatttttatcataagCGTCACACACTG
CTAGAAATTCATCTGAGATACAGGTTGTTACAGTAACACTGGTGGTTTAA
CAAAATGAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCTATAATTC
AGCTGAACCCAACAAGTGCTTGGTGGTCTAAGAGTGGCGGTGGTGGTAGT
GGAGCCACGCGCAGCCATGACATTAACTCACAAAGTGGTTTGACAAACCT
TTACAACCAAAAGATCAAAACTATCGAACGAGTGTCAAGAAAAATGCCAT
ATGTTCCAATCTTCAAGCATCAGGGTGTTCGAGTTACCCTTGACGATGGC
AGTAAGTTTCTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAGGTGGACA
AAATGTTGTCACTAATGCCCGTCATATGAGTAAGAAATGGTCTGGCGCCG
GTGCACGTAAGGTCAATAGTGGCGCCACACTTGGGGACTTGGTAAAAGCT
GGAGGAAAGAATTATAATGTTGCTGTGGATAATTGTTACCATGGCGCTAC
AAGAATGGAAAAGAAGGCTGATGGAAACTAATTTAGGAGATGTATTTTTT
GCATTCGGATTTTTCTAAATGATTTCCGTGAAAACCGTGAAAAATACTTA
TTACTATTCCTAAGATACTGTAATTTCGACGGGTAATCTTTAGTTGGGAC
TATTTGcctttttattttgtaattttgagtatatttttcatgtaattctt
cttttttttttaatttagccCATTAtttgtaatagttatcgcatgacttc
gagtgaaATACGataaatattttacgagttctggactttttccgtaatat
tttccgaaaaatatCGGAAAAAGTACGGAACGAGTGCGATAACTCATTTA
TTGTCGaccccaaaaaaatttattgtttttcgatAAAGTTCAAATATCAA
ATTCTAAAAGCAGTCACATTTCTACTTTTTATCGATACAAaggtcaaaac
aaaaaaatttgaaaatgtttattcacaatatttcattactttttcatTAT
AAACCTTAAAATCTCTTATATCTCTTTtacatttagaaattttttaagaa
tatcAATATTTTATGATTTAGTTATTCATGTGCaccaaatttcgaaagaa
tTTAACCATGAATAAGTTTACCGCgagtttattttatttgaaactcTGTA
GGAATTATtaggaaattttaattcttaaGTTAAGTTTAAACTGCGTCCAT
GTTAAGTTAATTAAAATGACCGTAAGGAAAATTGTCCAGAGATTCAAATA
TAtaagaatttaaagaaaataacgACGTTATGTAGAAAATCAGAAT Run BLAST on NCBI transcript from alignment at scaffold_316:230588..234174- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059078 ID=TCONS_00059078|Name=TCONS_00059078|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at scaffold_316:230588..234174- (Clytia hemisphaerica)
GTTCAAGCCTGTCTGAAGGGTATTATTTTTATCATAAGGTACTTTTTATT
ACTCTGTACGTGAACCGGATTGTTTTAAGTCAGGGACTTTTCCCTTGATT
TTTCTAATGACACACCAATTGACATATTTACCAAAAGCTAAGGGTTTCGA
ATTTCCAAAACACTTGATTACAGCAAAAAACAATAAATGTCTGGTCACAC
TGTAATTCTTTGAACAACCATGTAACTACCTATTTTTGTTTAGAATGTTA
GTCCATAAAGAGATGAAAATTTTCCAAGATCAATGTTTGGATTTGAGGCC
ATAACTTATAAATAGTATCTTTGTATCCTTAGCGTCACACACTGCTAGAA
ATTCATCTGAGATACAGGTTGTTACAGTAACACTGGTGGTTTAACAAAAT
GAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCTATAATTCAGGTAA
CTAACTAACCTTCTTTTATTCTGAGTTTTTGACAACATAATAAGTGAATT
AATTTTCGCGAGACAATTTTTTCTCAAAAATAAATAAAATGGTAGTATAG
ATATTTTCGCGAGCATAGAAAATAAGAATTTTCGCGAGGATAAAATTTCG
CGAATCACCTGACCCAATTTCTTTCATTTTCCTAGGGATTTGTTTGGAAA
AAAATAATGATTTTGAATTTTGCGCGAGGATTATGTTTCTTACTGTAGAG
TTCAAAGATTTTAACAATGTTCACCATAGCATTAAATTTCGCGCAAAGTT
TCGGAAAAACTCGCGACTCTCGCGAAATATAATCATTGTGTTAATTAATC
CACTTGAGTAGCCTAATGAGAGTAAATAAGCAAACGGAATTGAACTTTTT
CTTTATCGAAGGGGTATTAATAGTCGGTAGAGATTCACAAAATATATTTC
TTGGTTGTGGATTAAAAAATGGGCTATTCCAGAAAAATTTGTACTCCTTG
TGTTAAGGAGGTCTTTTTTGGGAAAGATTACCCCCTCCCTCTGGATTATT
TTTTCACTTTGTGGACCACCCTGGATTTTCGACCTCGTTTTACTGACCAC
CCTGGACTTTTACAATCGATACCAGACTACTATCCTGGACGCCACACCTC
CTCAACAAAGGAGGTACAGACTATTTCTGGAATAGCCCGTGTGAATACAG
CGTGTCTTATTAAAAATAATATATAATCTATAATTCGAATCTATAATTTG
AATTATTATTTTTTGATAATAAGCTATATTTTCGAGATACTCTCTACCTA
TTCAACAGTGTATGGTTGAAATCAAAGTTGTTCTTTGTCGAAAATTTAAA
CCATCAATACCAAATTTAAGTTTTGCTGCTTAAAGGAATGTATACCACTA
ATGTCACACTTTTTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTA
ACCCATGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTTACCAGCTTTTCTC
GAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGGTGCATGACC
ATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAAATGTTTTTG
GGCAAATTTGGGCCAAAAAACGGCTTAAAAACGGGTTTTTTGGACTTTGT
GAAAAATTAGATCATTAATTTTTTCTGATTTTTAGCATGAAAGTAGGGTA
CAATCTTAGTTAAAGGATGGCTCAAGCAGATTTTTGCAAAACATTTTTTT
TGGCTCAAAAATCGCATTTTTATCTATAAGAACCACTTTTAATAAGAATN
NTTTTTATTTCTTTTTCAAAAATCTTTTTCAATAATAGTTTCTCTCAATA
GATATGCTTTCATTTTCTTTATTTTTTTGTATTTTGACCAGTTATGTCTT
ATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAACCAGGTAGG
TCCATAAAAGTATCGCTTGTTTTCTTTAGCTGAACCCAACAAGTGCTTGG
TGGTCTAAGAGTGGCGGTGGTGGTAGTGGAGCCACGCGCAGCCATGACAT
TAACTCACAAAGTGGTTTGACAAACCTTTACAACCAAAAGATCAAAACTA
TCGAACGAGTGTCAAGAAAAATGCCATATGTTCCAATCTTCAAGCATCAG
GGTGTTCGGTAAGTGTTTACGCAACCTTGAAGAGGAGGGATCATAACTTC
CTTTACTTTATTTTTGTATTTTTGCAAAGAAGTTGGAGGAGTAGAGTCCC
TTTACCTCCAACAAGTTATCTCGTCTCTTCACTCAGCAATGCCTTATAAA
CCTTGCTCCTTAGCTCGAGATTTCTACAAGTCGAACAAATTTGTGTTCTC
GGTGCGTGTTCTAGTTATGGAGACTCCACTCTTAATCTTCAGACATTCAA
GTTTTGTTTTTGGGGTAAATTGGGTTATGAAAGGGGGTCTAGAATTGTAG
ATAAGCTAGCCAAAATTAACATTCCCTACCACTCTCTATTTAGTCTCAAT
ATTTTAGTCTTCTCCGTTTGTTAACCCAGCCCACGGGGACCCTTTGTAGG
AAGTCTTAGTTACTAACCAAAAAAAACCTTCAAGAGACAAATAGACATTT
CAGTTGATTGTTTTCTCCATAGAGTTACCCTTGACGATGGCAGTAAGTTT
CTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAGGTGGACAAAATGTTGT
CACTAATGCCCGTCATATGAGTAAGAAATGGTCTGGCGCCGGTGCACGTA
AGGTCAATAGTGGCGCCACACTTGGGGACTTGGTAAAAGCTGGAGGAAAG
AATTATAATGTTGCTGTGGATAATTGTTACCATGGCGCTACAAGAATGGA
AAAGAAGGCTGATGGAAACTAATTTAGGAGATGTATTTTTTGCATTCGGA
TTTTTCTAAATGATTTCCGTGAAAACCGTGAAAAATACTTATTACTATTC
CTAAGATACTGTAATTTCGACGGGTAATCTTTAGTTGGGACTATTTGCCT
TTTTATTTTGTAATTTTGAGTATATTTTTCATGTAATTCTTCTTTTTTTT
TTAATTTAGCCCATTATTTGTAATAGTTATCGCATGACTTCGAGTGAAAT
ACGATAAATATTTTACGAGTTCTGGACTTTTTCCGTAATATTTTCCGAAA
AATATCGGAAAAAGTACGGAACGAGTGCGATAACTCATTTATTGTCGACC
CCAAAAAAATTTATTGTTTTTCGATAAAGTTCAAATATCAAATTCTAAAA
GCAGTCACATTTCTACTTTTTATCGATACAAAGGTCAAAACAAAAAAATT
TGAAAATGTTTATTCACAATATTTCATTACTTTTTCATTATAAACCTTAA
AATCTCTTATATCTCTTTTACATTTAGAAATTTTTTAAGAATATCAATAT
TTTATGATTTAGTTATTCATGTGCACCAAATTTCGAAAGAATTTAACCAT
GAATAAGTTTACCGCGAGTTTATTTTATTTGAAACTCTGTAGGAATTATT
AGGAAATTTTAATTCTTAAGTTAAGTTTAAACTGCGTCCATGTTAAGTTA
ATTAAAATGACCGTAAGGAAAATTGTCCAGAGATTCAAATATATAAGAAT
TTAAAGAAAATAACGACGTTATGTAGAAAATCAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059078-exon-scaffold_316-1575043694:234137..234174 | TCONS_00059078-exon-scaffold_316-1575043694:234137..234174 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1575043694:233729..233842 | TCONS_00059078-exon-scaffold_316-1575043694:233729..233842 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1575043694:232067..232245 | TCONS_00059078-exon-scaffold_316-1575043694:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1575043694:230588..231602 | TCONS_00059078-exon-scaffold_316-1575043694:230588..231602 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1510915933:234137..234174 | TCONS_00059078-exon-scaffold_316-1510915933:234137..234174 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1510915933:233729..233842 | TCONS_00059078-exon-scaffold_316-1510915933:233729..233842 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1510915933:232067..232245 | TCONS_00059078-exon-scaffold_316-1510915933:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1510915933:230588..231602 | TCONS_00059078-exon-scaffold_316-1510915933:230588..231602 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1491911889:234137..234174 | TCONS_00059078-exon-scaffold_316-1491911889:234137..234174 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1491911889:233729..233842 | TCONS_00059078-exon-scaffold_316-1491911889:233729..233842 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1491911889:232067..232245 | TCONS_00059078-exon-scaffold_316-1491911889:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059078-exon-scaffold_316-1491911889:230588..231602 | TCONS_00059078-exon-scaffold_316-1491911889:230588..231602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:230588..234174 - |
Blast
The following BLAST results are available for this feature:
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