TCONS_00059079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059079
Unique NameTCONS_00059079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1361

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059079 ID=TCONS_00059079|Name=TCONS_00059079|organism=Clytia hemisphaerica|type=transcript|length=1361bp
CCTATTGTTTACAATTGATGTCTAGAGAGACTGTTTAAACCAATCTAATA
GAACGTCACACACTGCTAGAAATTCATCTGAGATACAGGTTGTTACAGTA
ACACTGGTGGTTTAACAAAATGAAGATTCTTGCATTGACGTTATTAGTAT
TTTGTGCTATAATTCAGCTGAACCCAACAAGTGCTTGGTGGTCTAAGAGT
GGCGGTGGTGGTAGTGGAGCCACGCGCAGCCATGACATTAACTCACAAAG
TGGTTTGACAAACCTTTACAACCAAAAGATCAAAACTATCGAACGAGTGT
CAAGAAAAATGCCATATGTTCCAATCTTCAAGCATCAGGGTGTTCGAGTT
ACCCTTGACGATGGCAGTAAGTTTCTGGTCCATAAGGGTTCTGGCTATGG
TGGCCGAGGTGGACAAAATGTTGTCACTAATGCCCGTCATATGAGTAAGA
AATGGTCTGGCGCCGGTGCACGTAAGGTCAATAGTGGCGCCACACTTGGG
GACTTGGTAAAAGCTGGAGGAAAGAATTATAATGTTGCTGTGGATAATTG
TTACCATGGCGCTACAAGAATGGAAAAGAAGGCTGATGGAAACTAATTTA
GGAGATGTATTTTTTGCATTCGGATTTTTCTAAATGATTTCCGTGAAAAC
CGTGAAAAATACTTATTACTATTCCTAAGATACTGTAATTTCGACGGGTA
ATCTTTAGTTGGGACTATTTGcctttttattttgtaattttgagtatatt
tttcatgtaattcttcttttttttttaatttagccCATTAtttgtaatag
ttatcgcatgacttcgagtgaaATACGataaatattttacgagttctgga
ctttttccgtaatattttccgaaaaatatCGGAAAAAGTACGGAACGAGT
GCGATAACTCATTTATTGTCGaccccaaaaaaatttattgtttttcgatA
AAGTTCAAATATCAAATTCTAAAAGCAGTCACATTTCTACTTTTTATCGA
TACAAaggtcaaaacaaaaaaatttgaaaatgtttattcacaatatttca
ttactttttcatTATAAACCTTAAAATCTCTTATATCTCTTTtacattta
gaaattttttaagaatatcAATATTTTATGATTTAGTTATTCATGTGCac
caaatttcgaaagaatTTAACCATGAATAAGTTTACCGCgagtttatttt
atttgaaactcTGTAGGAATTATtaggaaattttaattcttaaGTTAAGT
TTAAACTGCGTCCATGTTAAGTTAATTAAAATGACCGTAAGGAAAATTGT
CCAGAGATTCAAATATAtaagaatttaaagaaaataacgACGTTATGTAG
AAAATCAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00059079-protein

>TCONS_00059079-protein ID=TCONS_00059079-protein|Name=TCONS_00059079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MKILALTLLVFCAIIQLNPTSAWWSKSGGGGSGATRSHDINSQSGLTNLY
NQKIKTIERVSRKMPYVPIFKHQGVRVTLDDGSKFLVHKGSGYGGRGGQN
VVTNARHMSKKWSGAGARKVNSGATLGDLVKAGGKNYNVAVDNCYHGATR
MEKKADGN
Run BLAST on NCBI

transcript from alignment at scaffold_316:230588..234233-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059079 ID=TCONS_00059079|Name=TCONS_00059079|organism=Clytia hemisphaerica|type=transcript|length=3646bp|location=Sequence derived from alignment at scaffold_316:230588..234233- (Clytia hemisphaerica)
CCTATTGTTTACAATTGATGTCTAGAGAGACTGTTTAAACCAATCTAATA
GAAGTACGTGTTCAAGCCTGTCTGAAGGGTATTATTTTTATCATAAGGTA
CTTTTTATTACTCTGTACGTGAACCGGATTGTTTTAAGTCAGGGACTTTT
CCCTTGATTTTTCTAATGACACACCAATTGACATATTTACCAAAAGCTAA
GGGTTTCGAATTTCCAAAACACTTGATTACAGCAAAAAACAATAAATGTC
TGGTCACACTGTAATTCTTTGAACAACCATGTAACTACCTATTTTTGTTT
AGAATGTTAGTCCATAAAGAGATGAAAATTTTCCAAGATCAATGTTTGGA
TTTGAGGCCATAACTTATAAATAGTATCTTTGTATCCTTAGCGTCACACA
CTGCTAGAAATTCATCTGAGATACAGGTTGTTACAGTAACACTGGTGGTT
TAACAAAATGAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCTATAA
TTCAGGTAACTAACTAACCTTCTTTTATTCTGAGTTTTTGACAACATAAT
AAGTGAATTAATTTTCGCGAGACAATTTTTTCTCAAAAATAAATAAAATG
GTAGTATAGATATTTTCGCGAGCATAGAAAATAAGAATTTTCGCGAGGAT
AAAATTTCGCGAATCACCTGACCCAATTTCTTTCATTTTCCTAGGGATTT
GTTTGGAAAAAAATAATGATTTTGAATTTTGCGCGAGGATTATGTTTCTT
ACTGTAGAGTTCAAAGATTTTAACAATGTTCACCATAGCATTAAATTTCG
CGCAAAGTTTCGGAAAAACTCGCGACTCTCGCGAAATATAATCATTGTGT
TAATTAATCCACTTGAGTAGCCTAATGAGAGTAAATAAGCAAACGGAATT
GAACTTTTTCTTTATCGAAGGGGTATTAATAGTCGGTAGAGATTCACAAA
ATATATTTCTTGGTTGTGGATTAAAAAATGGGCTATTCCAGAAAAATTTG
TACTCCTTGTGTTAAGGAGGTCTTTTTTGGGAAAGATTACCCCCTCCCTC
TGGATTATTTTTTCACTTTGTGGACCACCCTGGATTTTCGACCTCGTTTT
ACTGACCACCCTGGACTTTTACAATCGATACCAGACTACTATCCTGGACG
CCACACCTCCTCAACAAAGGAGGTACAGACTATTTCTGGAATAGCCCGTG
TGAATACAGCGTGTCTTATTAAAAATAATATATAATCTATAATTCGAATC
TATAATTTGAATTATTATTTTTTGATAATAAGCTATATTTTCGAGATACT
CTCTACCTATTCAACAGTGTATGGTTGAAATCAAAGTTGTTCTTTGTCGA
AAATTTAAACCATCAATACCAAATTTAAGTTTTGCTGCTTAAAGGAATGT
ATACCACTAATGTCACACTTTTTGGACCTACCCCGGTGGGGTGGAGGTCC
TATAAATTAACCCATGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTTACCA
GCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGG
TGCATGACCATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAAAAAA
ATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCTTAAAAACGGGTTTTTT
GGACTTTGTGAAAAATTAGATCATTAATTTTTTCTGATTTTTAGCATGAA
AGTAGGGTACAATCTTAGTTAAAGGATGGCTCAAGCAGATTTTTGCAAAA
CATTTTTTTTGGCTCAAAAATCGCATTTTTATCTATAAGAACCACTTTTA
ATAAGAATNNTTTTTATTTCTTTTTCAAAAATCTTTTTCAATAATAGTTT
CTCTCAATAGATATGCTTTCATTTTCTTTATTTTTTTGTATTTTGACCAG
TTATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTGATAA
CCAGGTAGGTCCATAAAAGTATCGCTTGTTTTCTTTAGCTGAACCCAACA
AGTGCTTGGTGGTCTAAGAGTGGCGGTGGTGGTAGTGGAGCCACGCGCAG
CCATGACATTAACTCACAAAGTGGTTTGACAAACCTTTACAACCAAAAGA
TCAAAACTATCGAACGAGTGTCAAGAAAAATGCCATATGTTCCAATCTTC
AAGCATCAGGGTGTTCGGTAAGTGTTTACGCAACCTTGAAGAGGAGGGAT
CATAACTTCCTTTACTTTATTTTTGTATTTTTGCAAAGAAGTTGGAGGAG
TAGAGTCCCTTTACCTCCAACAAGTTATCTCGTCTCTTCACTCAGCAATG
CCTTATAAACCTTGCTCCTTAGCTCGAGATTTCTACAAGTCGAACAAATT
TGTGTTCTCGGTGCGTGTTCTAGTTATGGAGACTCCACTCTTAATCTTCA
GACATTCAAGTTTTGTTTTTGGGGTAAATTGGGTTATGAAAGGGGGTCTA
GAATTGTAGATAAGCTAGCCAAAATTAACATTCCCTACCACTCTCTATTT
AGTCTCAATATTTTAGTCTTCTCCGTTTGTTAACCCAGCCCACGGGGACC
CTTTGTAGGAAGTCTTAGTTACTAACCAAAAAAAACCTTCAAGAGACAAA
TAGACATTTCAGTTGATTGTTTTCTCCATAGAGTTACCCTTGACGATGGC
AGTAAGTTTCTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAGGTGGACA
AAATGTTGTCACTAATGCCCGTCATATGAGTAAGAAATGGTCTGGCGCCG
GTGCACGTAAGGTCAATAGTGGCGCCACACTTGGGGACTTGGTAAAAGCT
GGAGGAAAGAATTATAATGTTGCTGTGGATAATTGTTACCATGGCGCTAC
AAGAATGGAAAAGAAGGCTGATGGAAACTAATTTAGGAGATGTATTTTTT
GCATTCGGATTTTTCTAAATGATTTCCGTGAAAACCGTGAAAAATACTTA
TTACTATTCCTAAGATACTGTAATTTCGACGGGTAATCTTTAGTTGGGAC
TATTTGCCTTTTTATTTTGTAATTTTGAGTATATTTTTCATGTAATTCTT
CTTTTTTTTTTAATTTAGCCCATTATTTGTAATAGTTATCGCATGACTTC
GAGTGAAATACGATAAATATTTTACGAGTTCTGGACTTTTTCCGTAATAT
TTTCCGAAAAATATCGGAAAAAGTACGGAACGAGTGCGATAACTCATTTA
TTGTCGACCCCAAAAAAATTTATTGTTTTTCGATAAAGTTCAAATATCAA
ATTCTAAAAGCAGTCACATTTCTACTTTTTATCGATACAAAGGTCAAAAC
AAAAAAATTTGAAAATGTTTATTCACAATATTTCATTACTTTTTCATTAT
AAACCTTAAAATCTCTTATATCTCTTTTACATTTAGAAATTTTTTAAGAA
TATCAATATTTTATGATTTAGTTATTCATGTGCACCAAATTTCGAAAGAA
TTTAACCATGAATAAGTTTACCGCGAGTTTATTTTATTTGAAACTCTGTA
GGAATTATTAGGAAATTTTAATTCTTAAGTTAAGTTTAAACTGCGTCCAT
GTTAAGTTAATTAAAATGACCGTAAGGAAAATTGTCCAGAGATTCAAATA
TATAAGAATTTAAAGAAAATAACGACGTTATGTAGAAAATCAGAAT

Coding sequence (CDS) from alignment at scaffold_316:230588..234233-

>TCONS_00059079 ID=TCONS_00059079|Name=TCONS_00059079|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_316:230588..234233- (Clytia hemisphaerica)
AGTTACCCTTGACGATGGCAGTAAGTTTCTGGTCCATAAGGGTTCTGGCT
ATGGTGGCCGAGGTGGACAAAATGTTGTCACTAATGCCCGTCATATGAGT
AAGAAATGGTCTGGCGCCGGTGCACGTAAGGTCAATAGTGGCGCCACACT
TGGGGACTTGGTAAAAGCTGGAGGAAAGAATTATAATGTTGCTGTGGATA
ATTGTTACCATGGCGCTACAAGAATGGAAAAGAAGGCTGATGGAAACTAA
CTGAACCCAACAAGTGCTTGGTGGTCTAAGAGTGGCGGTGGTGGTAGTGG
AGCCACGCGCAGCCATGACATTAACTCACAAAGTGGTTTGACAAACCTTT
ACAACCAAAAGATCAAAACTATCGAACGAGTGTCAAGAAAAATGCCATAT
GTTCCAATCTTCAAGCATCAGGGTGTTCGATGAAGATTCTTGCATTGACG
TTATTAGTATTTTGTGCTATAATTCAGAGTTACCCTTGACGATGGCAGTA
AGTTTCTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAGGTGGACAAAAT
GTTGTCACTAATGCCCGTCATATGAGTAAGAAATGGTCTGGCGCCGGTGC
ACGTAAGGTCAATAGTGGCGCCACACTTGGGGACTTGGTAAAAGCTGGAG
GAAAGAATTATAATGTTGCTGTGGATAATTGTTACCATGGCGCTACAAGA
ATGGAAAAGAAGGCTGATGGAAACTAACTGAACCCAACAAGTGCTTGGTG
GTCTAAGAGTGGCGGTGGTGGTAGTGGAGCCACGCGCAGCCATGACATTA
ACTCACAAAGTGGTTTGACAAACCTTTACAACCAAAAGATCAAAACTATC
GAACGAGTGTCAAGAAAAATGCCATATGTTCCAATCTTCAAGCATCAGGG
TGTTCGATGAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCTATAAT
TCAGAGTTACCCTTGACGATGGCAGTAAGTTTCTGGTCCATAAGGGTTCT
GGCTATGGTGGCCGAGGTGGACAAAATGTTGTCACTAATGCCCGTCATAT
GAGTAAGAAATGGTCTGGCGCCGGTGCACGTAAGGTCAATAGTGGCGCCA
CACTTGGGGACTTGGTAAAAGCTGGAGGAAAGAATTATAATGTTGCTGTG
GATAATTGTTACCATGGCGCTACAAGAATGGAAAAGAAGGCTGATGGAAA
CTAACTGAACCCAACAAGTGCTTGGTGGTCTAAGAGTGGCGGTGGTGGTA
GTGGAGCCACGCGCAGCCATGACATTAACTCACAAAGTGGTTTGACAAAC
CTTTACAACCAAAAGATCAAAACTATCGAACGAGTGTCAAGAAAAATGCC
ATATGTTCCAATCTTCAAGCATCAGGGTGTTCGATGAAGATTCTTGCATT
GACGTTATTAGTATTTTGTGCTATAATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037206XLOC_037206Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059079-proteinTCONS_00059079-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059079-exon-scaffold_316-1575043694:234181..234233TCONS_00059079-exon-scaffold_316-1575043694:234181..234233Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1575043694:233729..233842TCONS_00059079-exon-scaffold_316-1575043694:233729..233842Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1575043694:232067..232245TCONS_00059079-exon-scaffold_316-1575043694:232067..232245Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1575043694:230588..231602TCONS_00059079-exon-scaffold_316-1575043694:230588..231602Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1510915933:234181..234233TCONS_00059079-exon-scaffold_316-1510915933:234181..234233Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1510915933:233729..233842TCONS_00059079-exon-scaffold_316-1510915933:233729..233842Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1510915933:232067..232245TCONS_00059079-exon-scaffold_316-1510915933:232067..232245Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1510915933:230588..231602TCONS_00059079-exon-scaffold_316-1510915933:230588..231602Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1491911889:234181..234233TCONS_00059079-exon-scaffold_316-1491911889:234181..234233Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1491911889:233729..233842TCONS_00059079-exon-scaffold_316-1491911889:233729..233842Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1491911889:232067..232245TCONS_00059079-exon-scaffold_316-1491911889:232067..232245Clytia hemisphaericaexon
TCONS_00059079-exon-scaffold_316-1491911889:230588..231602TCONS_00059079-exon-scaffold_316-1491911889:230588..231602Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:230588..234233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.8361e-08	5.10417e-08	1.54425e-07	3.7806e-08	5.42053e-08	1.19913e-08	3.85088	2.46882	1.33677e-06	0	8.60595	5.55991	89.9737	66.5672	0.872129	8.75314	50.6665	61.7861	3.58389	0	41.9734	53.0398	66.5318	56.1885	25.1515	19.8397	196.582	236.838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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