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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059081 ID=TCONS_00059081|Name=TCONS_00059081|organism=Clytia hemisphaerica|type=transcript|length=1337bp
TTNGATTTAGAGTATAAGAACGACGTTGGTTTCTTTTGGGTATACAATTA
CGCGCTGACCAAAAAATGGCGCAGTAATGCTACAGGCGGTGTAACCGAAG
CGCGTAAATATATGAGAACAGTATTCTCAGATTTTTGTATGAATAAAGAT
AATCAATTAGTGGAGTTTTGGAATTCTGTTTGTCACGAATTTGAATCGAA
AGAAGAAGCTAAGAAACAAAGGGAACTTGAAATGCAACGACAAATCCAAG
AAGAGTTAGATTCTGTACAAGAAAATGCCTAAGAAATGGTgatcagtttt
aattttctgatGTTTCTAACGGACAGATGAAAACATGTTAAAGGTGATGG
ACCCTACGTGCTACGATtaattgggctgttccattaaatatCTATACAGA
GGGTTTACGTACCTTTCAAGTCAAAAATTCTCAGAAATGTGTGGACACCC
CTCTCGAAAATgacaaaattcgaaaaaaatcacTTAGATTCAGACCCCCT
GGGAATTTGTCTCGGTTAACCCCCTGTATAGATGTAAAATTGAATCGCCT
ATTATTTCGAAAAGTGGAATTTCCGTTAACGACTTTCAAAGAGTGGAAAG
TATTTTGACAAATGAAAGTAAGAAATGTTATTCACTAGCAACGATACTGT
TAGATCTATGGATATCTCACATTAATATTCTACAAACTTCGGAGGAACGA
TTTCTGGGCTTGGTATCAGAGATTTACCAGAGAGACAATTCGAGATTCGA
GGTATTGTCTATAAGCCAATTTTTGTAGAGACAATGACAAAATCGATCTT
GGTAGATTGCCCGGGGGGGTACTCTACCCTTAACGACCGACGGGGTGCAc
cgctgaagttcgaaaaatggatCCTACGTGGGAcatgtttttttcgaaaa
tattgatcctgaatgggactgaaattcctaaattttctcaaaatttcctg
attttttctatttctgtGTTTTTGCGACCTTTCCTGGGACTCGCATTGag
gtgaaaaaggtaccctgaccagcggcacatccccgtacccctttttgctc
aagtaccccctccccccactCCAACCCACCGGGTAGATTGATTCTTCTGA
TTTTTTAAGTAATTTTTACTGattctaaattgatttttctgattttttcc
tttttgttgaTCTGTTTTAGGATgcaatttattttaaaatcaggATTGAT
TTTCTCTCTACactcttttcttttataagaaccagtaaattttttatgAG
GCTTGGCTATTCTTATTTCTTTaccactttgagcctcaaattgttcttat
tctgtttTTATTTATAGGGGAAATTGGGGTATTTGAG Run BLAST on NCBI transcript from alignment at scaffold_316:235086..237502- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059081 ID=TCONS_00059081|Name=TCONS_00059081|organism=Clytia hemisphaerica|type=transcript|length=2417bp|location=Sequence derived from alignment at scaffold_316:235086..237502- (Clytia hemisphaerica)
TTNGATTTAGAGTATAAGAACGACGTTGGTTTCTTTTGGGTATACAATTA
CGCGCTGACCAAAAAATGGCGCAGTAATGCTACAGGTGAGATCCAGTAGT
GGCAAGTTTATGTATTTACACTTTTGATGCCGGCAAGGTGACTAAAGCGA
TTTCCGCCACGTGAAATTGTGGATTCTCTCTCAATTTGTATCTTCCTTAT
TCTTATCACCCTACCATTTGGAAGCTGGGGCTGAATTCTATAGCTTCTCC
ACGGGAATAATTTTTTTCTTTCTTGAAATCAAGGAATTTCCTAGAAATCT
TGAATTTTCCGAACCTTTTTTGAGGGACTACTTTAAAATTTTCTGTTTTT
GTAGCCCTTAGAGAGACTTTGGAAGGTGAAAAAGTCGACCCTTATCGTCC
GCACAAACCCAGCACCCAATTTTGCCTAAGTACCCCCTTCTACCGGTGTT
TCCGATTTTAAAAATGATGTATGCTTGACTCATCAATAATAAGATCATAT
CCTTTAAACGACTTATTGTGTTTATTGTTTTCAGGCGGTGTAACCGAAGC
GCGTAAATATATGAGAACAGTATTCTCAGATTTTTGTATGAATAAAGATA
ATCAATTAGTGGAGTTTTGGAATTCGGTTTGTCACGAATTTGAATCGAAA
GAAGAAGCTAAGAAAGAAAGGGAACTTGAAATGCAGCGGCAAATCCAAGA
AGAGTTAGATTCTGTACAAGAAAATGCTTAAGAAATGGTGATCAGTTTTA
ATTTTCTGATGTTTCTAACGGACAGATGAAAACATGTTAAAGGTGATGGA
CCCTACGTGCTACGATTAATTGGGCTGCNATTCTTATCACCCTACCATTT
GGAAGCTGGGGCTGAATTCTATAGCTTCTCCACGGGAATAATTTTTTTCT
TTCTTGAAATCAAGGAATTTCCTAGAAATCTTGAATTTTCCGAACCTTTT
TTGAGGGACTACTTTAAAATTTTCTGTTTTTGTAGCCCTTAGAGAGACTT
TGGAAGGTGAAAAAGTCGACCCTTATCGTCCGCACAAACCCAGCACCCAA
TTTTGCCTAAGTACCCCCTTCTACCGGTGTTTCCGATTTTAAAAATGATG
TATGCTTGACTCATCAATAATAAGATCATATCCTTTAAACGACTTATTGT
GTTTATTGTTTTCAGGCGGTGTAACCGAAGCGCGTAAATATATGAGAACA
GTATTCTCAGATTTTTGTATGAATAAAGATAATCAATTAGTGGAGTTTTG
GAATTCTGTTTGTCACGAATTTGAATCGAAAGAAGAAGCTAAGAAACAAA
GGGAACTTGAAATGCAACGACAAATCCAAGAAGAGTTAGATTCTGTACAA
GAAAATGCCTAAGAAATGGTGATCAGTTTTAATTTTCTGATGTTTCTAAC
GGACAGATGAAAACATGTTAAAGGTGATGGACCCTACGTGCTACGATTAA
TTGGGCTGTTCCATTAAATATCTATACAGAGGGTTTACGTACCTTTCAAG
TCAAAAATTCTCAGAAATGTGTGGACACCCCTCTCGAAAATGACAAAATT
CGAAAAAAATCACTTAGATTCAGACCCCCTGGGAATTTGTCTCGGTTAAC
CCCCTGTATAGATGTAAAATTGAATCGCCTATTATTTCGAAAAGTGGAAT
TTCCGTTAACGACTTTCAAAGAGTGGAAAGTATTTTGACAAATGAAAGTA
AGAAATGTTATTCACTAGCAACGATACTGTTAGATCTATGGATATCTCAC
ATTAATATTCTACAAACTTCGGAGGAACGATTTCTGGGCTTGGTATCAGA
GATTTACCAGAGAGACAATTCGAGATTCGAGGTATTGTCTATAAGCCAAT
TTTTGTAGAGACAATGACAAAATCGATCTTGGTAGATTGCCCGGGGGGGT
ACTCTACCCTTAACGACCGACGGGGTGCACCGCTGAAGTTCGAAAAATGG
ATCCTACGTGGGACATGTTTTTTTCGAAAATATTGATCCTGAATGGGACT
GAAATTCCTAAATTTTCTCAAAATTTCCTGATTTTTTCTATTTCTGTGTT
TTTGCGACCTTTCCTGGGACTCGCATTGAGGTGAAAAAGGTACCCTGACC
AGCGGCACATCCCCGTACCCCTTTTTGCTCAAGTACCCCCTCCCCCCACT
CCAACCCACCGGGTAGATTGATTCTTCTGATTTTTTAAGTAATTTTTACT
GATTCTAAATTGATTTTTCTGATTTTTTCCTTTTTGTTGATCTGTTTTAG
GATGCAATTTATTTTAAAATCAGGATTGATTTTCTCTCTACACTCTTTTC
TTTTATAAGAACCAGTAAATTTTTTATGAGGCTTGGCTATTCTTATTTCT
TTACCACTTTGAGCCTCAAATTGTTCTTATTCTGTTTTTATTTATAGGGG
AAATTGGGGTATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059081-exon-scaffold_316-1575043694:237418..237502 | TCONS_00059081-exon-scaffold_316-1575043694:237418..237502 | Clytia hemisphaerica | exon |
| TCONS_00059081-exon-scaffold_316-1575043694:235086..236337 | TCONS_00059081-exon-scaffold_316-1575043694:235086..236337 | Clytia hemisphaerica | exon |
| TCONS_00059081-exon-scaffold_316-1510915933:237418..237502 | TCONS_00059081-exon-scaffold_316-1510915933:237418..237502 | Clytia hemisphaerica | exon |
| TCONS_00059081-exon-scaffold_316-1510915933:235086..236337 | TCONS_00059081-exon-scaffold_316-1510915933:235086..236337 | Clytia hemisphaerica | exon |
| TCONS_00059081-exon-scaffold_316-1491911889:237418..237502 | TCONS_00059081-exon-scaffold_316-1491911889:237418..237502 | Clytia hemisphaerica | exon |
| TCONS_00059081-exon-scaffold_316-1491911889:235086..236337 | TCONS_00059081-exon-scaffold_316-1491911889:235086..236337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:235086..237502 - |
Blast
The following BLAST results are available for this feature:
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