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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059084 ID=TCONS_00059084|Name=TCONS_00059084|organism=Clytia hemisphaerica|type=transcript|length=2696bpRun BLAST on NCBI protein sequence of TCONS_00059084-protein >TCONS_00059084-protein ID=TCONS_00059084-protein|Name=TCONS_00059084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=898bp GIMANNSLNYSPEISKSFTGMTKKHSLQEETHIHLLRSVSEDPGRPSSFDRun BLAST on NCBI transcript from alignment at scaffold_316:238838..260351- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059084 ID=TCONS_00059084|Name=TCONS_00059084|organism=Clytia hemisphaerica|type=transcript|length=21514bp|location=Sequence derived from alignment at scaffold_316:238838..260351- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_316:238838..260351- >TCONS_00059084 ID=TCONS_00059084|Name=TCONS_00059084|organism=Clytia hemisphaerica|type=CDS|length=43104bp|location=Sequence derived from alignment at scaffold_316:238838..260351- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059084 vs. Swiss-Prot (Human)
Match: DEPD5 (GATOR complex protein DEPDC5 OS=Homo sapiens GN=DEPDC5 PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 1.272e-42 Identity = 100/313 (31.95%), Postives = 165/313 (52.72%), Query Frame = 1
Query: 1756 EIIKAMKSQEYGLTFVPKQDLLCEYTFISAEAVAWMMKSIDGCHTKEDALVLGQAMLEAKVILHASESSRQTFADGFYLYFIXXXXXXXXXXXRRFWFNQKQTEDEMLDLYNIKWIEVAVWRDKYVSDKFLHDPLPPDLTYKL-RKP-----------------SDGAVFRSSSIPLYKKMEYNPDINQKSSRSEWCVIAYNGNYYPNQAAYALEVNWLVASGPIIADMVQKWSHRASSCGFHLVPAPMCVFPRHSIRCSRNPFRKNPFIPLNLKCLLKPGQERLFDNYDSKTWSRRMIYFQESILYKYKHFQ 2640
EI++AMK G+ + +Q L Y FISAE V W++ ++G T+ A+ + Q MLE ++I HAS + +TF GFY Y I +K+ + ++ + + KW EVA +V+++ +H +P L L +P S A ++++P + + + D+N ++ R EWC Y+GN+ N AA+ ++++W+ + ++ +MVQ W +A+SCGF LVP F S +P R FIPLN+ CLLK G E LFD+++ +T+ RM FQE+I +++ Q
Sbjct: 1179 EILEAMKHPSTGVQLLSEQKGLSPYCFISAEVVHWLVNHVEGIQTQAMAIDIMQKMLEEQLITHASGEAWRTFIYGFYFYKIVTDKEPDRVAMQQPATTWHTAGVDDFASFQRKWFEVA-----FVAEELVHSEIPAFLLPWLPSRPASYASRHSSFSRSFGGRSQAAALLAATVPEQRTVTLDVDVNNRTDRLEWCSCYYHGNFSLN-AAFEIKLHWMAVTAAVLFEMVQGWHRKATSCGFLLVPVLEGPFALPSYLYG-DPLRAQLFIPLNISCLLKEGSEHLFDSFEPETYWDRMHLFQEAIAHRFGFVQ 1484 HSP 2 Score: 129.798 bits (325), Expect = 1.999e-30 Identity = 84/271 (31.00%), Postives = 133/271 (49.08%), Query Frame = 1
Query: 703 GVDWKSLCFPACLPLTIHYFPDHKTLTDQYVEYNYNIVIDEDFVPGSIGTKTKDLKENKFDHTELPPEEKFMEMISQRISRGFQFVTDPSAIRILKLPDKSLQSMDFNYNRSYV------------LSIGTTIHCLRMLGEQIQVTRYSIRDPVIPKPVTYKYNMWP-YNCPQFSKGCTEFSYETPNNYAWNSVDRYICDTG-KDFNEVRDILEIMKYWRSRFLLLP--------VKKTDLNPTVKEDKRTHHADHMLKIEGFLRFLENVN 1449
GVDWKSL PACLPLT YFPD + L + Y E Y+++ + D+ D ++ ++ F E I QR+ +G+Q + P + L S Y+R V LS+G T H + + + I VTRY + P + Y Y++ P ++ +F EFS+E Y WN +D+YIC G +DF+ ++E +K+WR+RFLLLP + + + + + D+ D ++GF+RF+E +N
Sbjct: 741 GVDWKSLTTPACLPLTTDYFPDRQGLQNDYTEGCYDLLPE------------ADIDRRDEDGVQMTAQQVFEEFICQRLMQGYQIIVQPKTQKPNPAVPPPLSSSPL-YSRGLVSRNRPEEEDQYWLSMGRTFHKVTLKDKMITVTRYLPKYPYESAQIHYTYSLCPSHSDSEFVSCWVEFSHERLEEYKWNYLDQYICSAGSEDFS----LIESLKFWRTRFLLLPACVTATKRITEGEAHCDIYGDRPRADEDEWQLLDGFVRFVEGLN 994 The following BLAST results are available for this feature:
BLAST of TCONS_00059084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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