TCONS_00059088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059088
Unique NameTCONS_00059088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059088 ID=TCONS_00059088|Name=TCONS_00059088|organism=Clytia hemisphaerica|type=transcript|length=1051bp
ggCTATAAAGAAATTAATTATATgcaattaaaaaatgaaaatgtctaCAT
AAAACATGGCTTCTACAGCAATAACATGTAAATTGACTGTTCACAATTTG
AACTCCAGTTCGGATGATATCATCTTATATAAAGATTACCCTGGCTTGAA
GGCTGGTGATATTGTTGAGGTGTACCATGAGGACGGAGAATATAGCCGCC
TTTTAGTTCAAGTTAAACAGTTAAAAGAGCAAGAAGGCACTGGCCAACAG
AAAGGTTCAGTGAGTATCTTATCCAGCTTGGCCACTTCTTTTAATCTCAA
ACAATACCAAAATGTTATTGTCAACAAAGTGaacaaaaatgacgtcactc
taGACATCCttgaaatcatattcaaagacAACTTAGTCACACGTGGTGAC
TCGTGGAGACTTCATCGATCATTGATTGGATCATGTATTTATTACAGTCA
GAAATCCAATTTTCTGGATATGAGAAGTACAGTTAATGAGATGTGGATGA
GAGGCTGTAAAGTGGCTTGTGGTGTGGTCGGTGAAACTACAAAGGTTGTT
TACAGATCAGCCAGTGCCATGTTCCACATCTTCGTACAAATGAGTGCTGA
GATGTGGGAATGTGATTACACTGGGGAATTGTTCTTCGAGAAAGCCATCA
TGTATTTCTTGAAAGACCTCTTCAACAAGTGgaaagacaaagaaaataat
TGCAATCATCAAGTggttattgttttgttttcaagaaCATATTATACCGC
TAAAACTCTAGACGAACTATCACCTGAACTACAAAATGACGTTTTACGAA
GTCACGATGGTCGATATTATCAAGATTTCTACAAAGTCATTCGGCAATGT
GAAAAACATGATAATTTACAGAACGTTATTTTGGACTTGAAAAGCAGTTT
CCATGGTTATCCTCTATACGTTGGGTGTCAACAACCGTTCAGTGATGATA
AGACAAACCCCAAAGGAATTGGTATCAATTCAAGAGCTCACGAAGGGAAT
TTACTTGAAGCTATCAACCTTTCTCTGAATGTATTTGAGAAAGGTTACAT
C
Run BLAST on NCBI

transcript from alignment at scaffold_316:281575..286492-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059088 ID=TCONS_00059088|Name=TCONS_00059088|organism=Clytia hemisphaerica|type=transcript|length=4918bp|location=Sequence derived from alignment at scaffold_316:281575..286492- (Clytia hemisphaerica)
GGCTATAAAGAAATTAATTATATGCAATTAAAAAATGAAAATGTCTACAT
AAAACATGGCTTCTACAGCAATAACATGTAAATTGACTGTTCACAATTTG
AACTCCAGTTCGGATGATATCATCTTATATAAAGATTACCCTGGCTTGAA
GGCTGGTGATATTGTTGAGGTGTACCATGAGGACGGAGAATATAGCCGCC
TTTTAGTTCAAGTTAAACAGTTAAAAGAGCAAGAAGGCACTGGCCAACAG
AAAGGTGATTCAATTTTTTCTTCATATTTGATTTCAAACCTCGGAGGTTT
AGCTTGTCATTCTGTGATTAACACAATCATGTGTTATGCTGTTGAAGTTT
TTCCAAAAAAGCTTTATTATTCAATTAAGACGGCCTCACACAGCCTCGCA
TACTTTCTGGTAATGCTAGGTCAAAATTTGAAATAACATAAGGGTTCACA
TTATTATAAAGTCTTGGGCTCTGCCAAGAGGGGAAACACATATTATGAAA
TTGATATAAAAATTCTCAGATTTTCATTATCTTTTGTGCCCAATTTGTTA
GTATACTGTCTATAATGTTTTATCCTTCTAAACCTTGGATTTCTAGGTTC
AGTGAGTATCTTATCCAGCTTGGCCACTTCTTTTAATCTCAAACAATACC
AAAATGTTATTGTCAACAAAGTGAACAAAAATGACGTCACTCTAGACATC
CTTGAAATCATATTCAAAGACAACTTAGTCACACGTGGTGACTCGTGGAG
ACTTCATCGATCATTGATTGGATCATGTATTTATTACAGTCAGAAATCCA
ATTTTCTGGATATGAGAAGTACAGTTAATGAGATGTGGATGAGAGGCTGT
AAAGTGGCTTGTGGTGTGGTCGGTGAAACTACAAAGGTATCATTGCTCAA
ATTATCATTTTCTTAGGATAGTGCTACGAATGAAAAAAATTTGTCCGTCT
AAGTTCACTTGTTTTAACTGTGATTTTATTTTAAAATTTTAAATATTAAA
AAAAGCCCTGTTCAATTACAATAACTATATAAGACTATATAAGAGCTCCG
TTTTACGTTTTATCAACAATTAATCAAGTTGTTATTCAGCGCAATCAGTC
CTAATTCTCCATAATCCTTTTTTTTAATACACCCAGAAAAAATTAAAACA
GAATCTATATATTAATAGCGGTGCTTTGTGTGTCTGTGTGTCACCACTTT
CGTTTTCGCTTTGTTTGTGTTTTAAAAATATGACTTTTAGTCTCTTGCTC
CACAAGTTTGTTCTATTGGATTCGCGCCATTTGCAAAAGATCGGATATAG
CTTGGTTTAGACTTTATTCAGCCTTTGTTTTGAAATTTAAGGCCCATCTA
CATTTTAGTAACTTTAATTTCTGCCCAGAGTTGCCTTTTTCTCTCTTCTT
TTGTTTTAAATGTTTCGAATGTATTTAACGATCGTATTTATTAATGACAT
TCGAATTCTTTTCAAAACAAAACAATTTCATTTCATAGAAAAGAATATTT
CAAAAGTAAATCAAAACATAAAAATCAAAAAGTTTGTGGACAACAACAGC
ATTCAAAGGACGATATATAAAGCATAAGAAAAAAATAGTTCACTTCCTTC
TTCTTATAAAGATATTCAAGTCGTCGTTATGTTAACTACCTGCAGAGTCG
TTTCAAACGACACTGGTCGATGCTCTTTCTGATAACTTTTGACTTAAACA
AAAAATTATGTCACGGGGGGGGGCTGTACACGATCCAAATATGGTTAAAA
GATAAGACACCCGGGGAAGGTTAGAGTTAAACGTTGTAGAGATTTTTTTT
TTGATCGTTTTTTTAAGGCAGCTTAACATCCATAGGACTTTTAGTGCGTT
CAGCTACAGCTTAACCGGCGTGCGACGCCGGGTACCGGCTAGTAATTATA
TATTTATATTGTAACAAAAATCTTCATAATCTACATTTATATAATTTTCA
TTGTGTTTTTTTATACTCTAATATATTTCATTTTAAAAACCTTAGTATTA
GTAATTGAATGTATTTCGAGTATTGTAAGTTGATCTTATGTTGACACCCA
CCCTTCTTTAAAGCTGGAAATAAATAAATGATCGGAATGCTGGATTTGCT
TATAAACGGTCAGAGAGGAAAATGTCTTTTTTTCAATTATTGACCCCGAC
CTTTCTTTTAATCATGTCTTTCAGAAGGGTGTCAGAATTACATGAGGAAT
GTCAACATTAGACCAACTTACGGGATGGGTGTTTTATGAAGACATACAGA
GGAAAAGAGATTTTAATTAAAGGGTCTTTAAACAACTGGGAATTTTCTTG
GTTACAGTTAGTGTTTATCAATGTTATTTCTAGGTTGTTTACAGATCAGC
CAGTGCCATGTTCCACATCTTCGTAAAGAGATTTCAATTGAAGGGTTTTT
GAACAACTAGGAATTTCATGTGGTTACAGTTTGTGTTTTTTTGTTATTTC
TAGGTTGTTTACAGGTCAGCCAGTGCCATGTTTCACATCTTCGTACAAAT
GAGTGCTGAGATGTGGGAATGTGATTACACTGGGGAATTGTTCTTCGAGA
AAGCCATCATGTATTTCTTGAAAGACCTCTTCAACAAGTGGAAAGACAAA
GAAAATAATTGCAATCATCAAGTGGTTATTGTTTTGTTTTCAAGAACATA
TTATACCGCTAAAACTCTAGGTATGGATTTCAGTCTNTGGTTATTGTTTT
ATTCTCAAGGACATATTATACTGCTAAAACTTTAGGTACGGATTTCAGTC
AATTATGTGAACTAGTTACCTTTATCTATGGAGATCTGCGAGGCTTGACT
TTAAAAAATGTTGGTTTGCCGTCAGCCGACCGACTCTTATCTAAACTTGC
CGACCTAAAAACTTTTATTGCTATTTTGACAAAGAGAATTTTTTTCTTCA
AAAATTACAAAATGTAGACAAATATTCTATCAAGGACCAAAATAAAAAAA
CATTTCCGACCGACCCACTTCCAAAGCCTATGGTCGAGTGACGGAAAACA
AAATTTTTTTGAGTCCAGCCTGAGTAAGTATCTTGATTCATGGTAAATCA
GAAAAAAGTAGAACCGAATCTATGGTAGATAGTATGACGTTCTAAATTGA
ATTTAGCCATCCCAGCTGGCACACAACGTTGTTTCAACGTTTATTTAACG
TTCACAGCGTCCATATAACGTTAAATGAACGTTGAAACAACGTTGTGTGC
CAGCTGGGATGGTAGATCGTCCTCATTAATGGTAGTCTGGCTTTTGCCGA
TAATGTTTTTTTTCGAGTTTTCTTATGAAAGGTACTTTCGGAGTGAGACC
TTACTAGATTTTAATGATAAAAGGATCGAATGCGAAGGAATTACTTTAGA
ATGCTCAATCCTCTATATTGTCTCTTAATTAAAGCAACATATGTACCATT
TTTATTTCTAATTACAGACGAACTATCACCTGAACTACAAAATGACGTTT
TACGAAGTCACGATGGTCGATATTATCAAGATTTCTACAAAGTCATTCGG
CAATGTGAAAAACATGATAATTTACAGAACGTTATTTTGGACTTGAAAAG
CAGTTTCCATGGTTATCCTCTATACGTTGGGTGTCAACAACCGTTCAGTG
ATGATAAGACAAACCCCAAAGGAATTGGTATCAATTCAAGAGCTCACGAA
GGGAATTTACTTGAAGCTATCAACCTTTCTCTGAATGGTTAGTAGATCTT
TACAGAAAGCCCCCAGCCGGGTCATACCAGAGATTTTCAAAATGGCACTT
GATGCCTCTCTGCTTGATACTGAGCCATTAAGAGGTGGATCAAAGGTAAG
TGGAGCAATCCAGGGAGAAAGAGTGGCGCCATCCCCTACCTTCGGGTAGA
TAACTATCGAAACGGAGCCTTTGGGTCGCTTCCGATTGCGGTTGCAGACT
TACTTTACTACTTTACAGAAACTTCTACCCAGTACTTCGATTCACTTTCT
TGGCATTTCTGATACATTAAAGAAGAAATTTTGGCGGGAAGAAAATCTGG
TGAATCAAATTCGCCAAATTAAGTTCCCGCCAAATTTAATTTTTTCCTTC
ATCCGCCAAATTAAATTTCTCGCCAAATCTAATTTGCTTTATTTATTCCC
CCAAATGTGTGCTATTTCAGGCTTTAAAACAGGTTTTTCCTTTTTTAATA
TAGTTTTTTTGGACAAAAATGCCCTTCATCTGCCTAATTAAATTCCCGCC
AAATTAAATCTTTTAAGTTAACCGCCAAATTAAATTCCCTCCGAAAAAAA
CTTTTTCGGCCATCCGCCAAATAAACTCCCGCCAAAATCTCTTCCTTAAA
TGTAGCTCTCACGAAAGATTATGCAAAAAATCTTGCAGGGTCCAAATTTC
ACCAGTGTCCGGATTTTGTCTTCTAGGGTCTGGTTTACGAAGCTCTCCCT
CGAGGGTCTATTTTTTTAACTCCAACGGTACATCACCATCTCAGCTGTCT
AGGTCAATACCCCCGGGACTCGAAATCTAGTCAAGTAGAAAAAGTTATCT
TATTTTTGTAATCTTTTTCTCTTTTCCCCCAGTAGGGAGTAGGCTACATC
TTAAATTCCTTCGTTTCGAGCGTAAAACTTTTACTCTTAGGGATATGCGC
ACTGCTCTTGTTTTGAATATTGTATTTCTCCTGATACATCGCATGCGCAC
TGAGGTTATGATGAAACAATAGAGAGTTTCGAAACCTAAGCCAATCAGCT
GTGTTTTAAACATTCTTTTAATTTAAATCCTTATTAATAAACTTCTTTGA
AATTCTATTATGTTTTCTAAAAAGCGAATTTCCGGTGGGGGTTACTAGTG
GCCGCCCATAAGGCCTAAAAGCCTGGAGCTGTCTATTGTGTAGACTACCC
CAGAAGGCTTCATCTATCTATCTATGTATAATCAATTTTCTTTCGTAGTA
TTTGAGAAAGGTTACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037209XLOC_037209Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059088-exon-scaffold_316-1575043694:286239..286492TCONS_00059088-exon-scaffold_316-1575043694:286239..286492Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1575043694:285607..285896TCONS_00059088-exon-scaffold_316-1575043694:285607..285896Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1575043694:284127..284159TCONS_00059088-exon-scaffold_316-1575043694:284127..284159Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1575043694:283823..284006TCONS_00059088-exon-scaffold_316-1575043694:283823..284006Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1575043694:282806..283075TCONS_00059088-exon-scaffold_316-1575043694:282806..283075Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1575043694:281575..281594TCONS_00059088-exon-scaffold_316-1575043694:281575..281594Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:286239..286492TCONS_00059088-exon-scaffold_316-1510915933:286239..286492Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:285607..285896TCONS_00059088-exon-scaffold_316-1510915933:285607..285896Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:284127..284159TCONS_00059088-exon-scaffold_316-1510915933:284127..284159Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:283823..284006TCONS_00059088-exon-scaffold_316-1510915933:283823..284006Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:282806..283075TCONS_00059088-exon-scaffold_316-1510915933:282806..283075Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1510915933:281575..281594TCONS_00059088-exon-scaffold_316-1510915933:281575..281594Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:286239..286492TCONS_00059088-exon-scaffold_316-1491911889:286239..286492Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:285607..285896TCONS_00059088-exon-scaffold_316-1491911889:285607..285896Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:284127..284159TCONS_00059088-exon-scaffold_316-1491911889:284127..284159Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:283823..284006TCONS_00059088-exon-scaffold_316-1491911889:283823..284006Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:282806..283075TCONS_00059088-exon-scaffold_316-1491911889:282806..283075Clytia hemisphaericaexon
TCONS_00059088-exon-scaffold_316-1491911889:281575..281594TCONS_00059088-exon-scaffold_316-1491911889:281575..281594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:281575..286492 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719241	0.919319	2.97533	1.91012	2.91782	2.23864	2.66778	3.54658	1.22715	1.79261	2.55325	1.82183	0.817682	3.00794	1.26438	2.03177	1.03806	1.62954	0.625476	0.418031	1.58759	1.10615	0.385945	1.08566	3.56967	3.69729	0.857003	0	1.25002	0.412271
Blast
[Close]
BLAST of TCONS_00059088 vs. Swiss-Prot (Human)
Match: DEPD5 (GATOR complex protein DEPDC5 OS=Homo sapiens GN=DEPDC5 PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.026e-82
Identity = 152/328 (46.34%), Postives = 218/328 (66.46%), Query Frame = 2 
Query:   80 KLTVH--NLNSSSDDIIL-YKDYPGLKAGDIVEVYHEDGEYSRLLVQVKQLKEQEGTGQQKGSVSILSSLATSFNLKQYQXXXXXXXXXXXXTLDILEIIFKDNLVTRGDSWRLHRSLIGSCIYYSQKSNFLDMRSTVNEMWMRGCKVACGVVGETTKVVYRSASAMFHIFVQMSAEMWECDYTGELFFEKAIMYFLKDLFNKWKDKENNCNHQVVIVLFSRTYYTAKTLDELSPELQNDVLRS-HDGRYYQDFYKVIRQCEKHDNLQNVILDLKSSFHGYPLYVGCQQPFSDDKTNPKGIGINSRAHEGNLLEAINLSLNVFEKGYI 1051
            KL +H      S D++++  K +P +K GDIVE+ H + EYS LL+QVK LKE      QK ++S+  ++   F L+ YQ+V VN V+  DVTLD++E+ FKD  + RGD WRL +SL+ +C Y +QK  F  +R+   E+W++  KV CG + E T+VV+RS SAM +IF+QMS EMW+ D  G+L+FEKA+  FL DLF KWK+K  NC+H+V +VLFSRT+Y AK++DE  PE+    +R  H GR+Y+DFYKV+ Q E+ +   ++++ +K  F  YP+ V  +Q     +  P+  G NS + +GN LEAINLS NVF+K YI
Sbjct:    8 KLVIHKKGFGGSDDELVVNPKVFPHIKLGDIVEIAHPNDEYSPLLLQVKSLKED----LQKETISVDQTVTQVFRLRPYQDVYVNVVDPKDVTLDLVELTFKDQYIGRGDMWRLKKSLVSTCAYITQKVEFAGIRAQAGELWVKNEKVMCGYISEDTRVVFRSTSAMVYIFIQMSCEMWDFDIYGDLYFEKAVNGFLADLFTKWKEK--NCSHEVTVVLFSRTFYDAKSVDEF-PEINRASIRQDHKGRFYEDFYKVVVQNERREEWTSLLVTIKKLFIQYPVLVRLEQ----AEGFPQ--GDNSTSAQGNYLEAINLSFNVFDKHYI 322
The following BLAST results are available for this feature:
BLAST of TCONS_00059088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DEPD51.026e-8246.34GATOR complex protein DEPDC5 OS=Homo sapiens GN=DE... [more]
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