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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059089 ID=TCONS_00059089|Name=TCONS_00059089|organism=Clytia hemisphaerica|type=transcript|length=1641bp
atcttggaaacttgaacttgattcaggtaactctcatccttgttgttgcg
aatacatcctgtagatgactgatgttgttttttctgaaagcttgatttcc
tagtgtgactaactgacaatCAATCCAGCCCTGACTGGTTGCGGTAAAAT
GACATAATGTCACAGGACATCACATGGGTGCATATCCTGAATCTCATAGT
AGCCTTAATTCCAAATATATAACATATGCTGATTCTTCTTTAGTGTGAAC
TAAATTCATAAATGGCTTGTGAGGTGTATCCTGACCAAACACAACAACAA
AAGATCCAAAGCCTTCAACATTCCATTGCATTCTTACAATCACAACACGC
AACAACTTTGAGCTCCTTGCATCAAGAGATCGAAAGGCTACAGAAGAAAT
GCAAAGATCTAACAAATCAAGTAACACTATCAGTACCCTCGTCTGAAGTT
GTACCTTGTTCAGGTCCACAAATCAGAAGGGACTTGGAGGATGAGATCAA
AACAACCAAAAGACAAAACAGAGATTTGTTGCAACAATCACAAAACAAAG
ATAAACGTATCCAGTTATTAGAGGGTCAACTTCGAAGTAAAGAACAAAAA
TATCATGCAGATTTAAAGAATATTCAAAGGCGTATCGCGGAGCTTGAACA
TGAGCTCGAAAATAAAGCGAACACGATTGTATATTTGACTTCTACTATAC
AACAAAAGAAATCGAAGAAAGCTACATTCGAGGGTCACGTGTCAAACCAC
GTGCTTGatgaacaacaacaacaacaactactaTCGAATGTTTCTTCAAA
TGCCGCCAAATCACGATTCAGCCCCACTCCCCCACCACCCATAGTGATGG
GCCAAACAAAACGACGTGATTATAACCTACGACGGAGTGGTGTCTCTCCT
TCACCAAGCCGTGCAGGAATAATTCAAGATGGTAGCTCACATCCAATGTT
AGGTTCAGATTATGTTTTACAGAATACGTTACCCAAAACGAATTCTACGC
GTATTTCACAACGTTATAGTAAACAATCGAATTTAGAACATTCAAAATCT
AACACTAAAAGAGATAAAGAATTTAAATTGGCAAATCATACGAGACCCAA
ACCTCCGGATTATGaagatttcatcaaaatgagTCAACCGGAAGTTATAC
GTAAATCATCTGCGGAGCCTTTACCTCCAATTACCACTCGAAGTGGTCGT
CAATTGCGTGAACCAGTTCAAACGCGTAGCCGCGTGCATCGCCACGTGCG
CCCAACTGCGAGCGCTTTGGGAGAGGTAGAGACTGTCATAATGGATTCTA
ATCTATCTTCACCGGAACGAACAATAAGAACATCCTtacaaaattcaaca
aagtaaattaattttttagagctatatttattttttaaagtgtGCCTCCA
AATTgtgtatattttgattttatttttaaattggtGTGCTTATATAAAGT
TATGTCTATAGGTCTCCCTTaaagatttgaaagatttgGATGTTCAGATA
TATGCACGTTTCTCTATAAGAATAaattgtataagaacataaggcttcga
ttgccaaaatgctaagaacaagctaagaacatctcaaggctttacggact
cgaaaacactcaattttttaggaaaaacggttaaaaatagt Run BLAST on NCBI transcript from alignment at scaffold_316:300601..307776- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059089 ID=TCONS_00059089|Name=TCONS_00059089|organism=Clytia hemisphaerica|type=transcript|length=7176bp|location=Sequence derived from alignment at scaffold_316:300601..307776- (Clytia hemisphaerica)
ATCTTGGAAACTTGAACTTGATTCAGGTAACTCTCATCCTTGTTGTTGCG
AATACATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTTGATTTCC
TAGTGTGACTAACTGACAATCAATCCAGCCCTGACTGGTTGCGGTAAAAT
GACATAATGTCACAGGACATCACATGGGTGCATATCCTGAATCTCATAGT
AGCCTTAATTCCAAATATATAACATATGCTGATTCTTCTTTAGTGTGAAC
TAAATTCATAAATGGCTTGTGAGGTGTATCCTGACCAAACACAACAACAA
AAGATCCAAAGCCTTCAACATTCCATTGCATTCTTACAATCACAACACGC
AACAACTTTGAGCTCCTTGCATCAAGAGATCGAAAGGCTACAGAAGAAAT
GCAAAGGTACATCCTTTTTTAAAAAAAGCAAAATATTTTGTGTTTCTATG
ATAATATTGTTATAGTTAACTTACTAACTACCACAATTCGGACATCCCCC
TTCTTAAGCTTGAAAATTTTCCTCATAAGCAGGGAATTGTGATTGTTTAC
CTTTTAAATCCGAGTGACTTTGTGCGACTAGCAATAACTCATTTAAAGCA
ATTTGAAAAACAATTAAAGTCTAATATGTGAGTAGATAAGATCAATTAAA
ACTGAGTGGAGAGTATTTTTCAAACTGAAAATATACGAAAACTGTAATGT
CTTAATGTTTCATTTAATTTCTGAATTTTGTGGCTCCAATTGGCTTGATT
TGCTCTTCTGTAAATGTGTGTTTACATTAGGACTAAAACTGTAGGACTTA
CAAACTTTTTCAAATTTATCTGAACATATTGTATTCCCAGGTGCCTAGTA
AGGCCTATCCCCCCACTTGTTAATTTTTCAATTTTTTCCAACCCCTTGAC
CTTATTATAGGACACCCCCCTCCCGTTTTTTAATTTTGAGACCAATTTCA
GTTGTCAAAGTCTCTTATTTATCTCTAAATAGGCAGGTTTTGGTCTATAA
TTATGTCTCCTTCTTGGGTATTTAGAGGTATGATTTCCAACCACCCCTCC
CTCACTTATTGAAATTTGCAAATTTTCCCAACCCCCGTTTATTCTGACCC
CCCCCTCCCCCATTTATTTGGCACCTGAGAGTATGTTCCTTTTGACAGCT
AATTTGTTGTGTTTTTTTTTTCAAGTCAAAATTTTCTTGTTGATCTTCAA
TGTCTTCAAACCTATTTACAGTATAAAAGTTTGTGTTCTTCTAAGCCAAC
AAGGTTGTTGTATTGCATAACCTTAATCCTTTTAAATTTTCACTGATTTA
TTTTTAGATCTAACAAATCAAGTAACACTATCAGTACCCTCGTCTGAAGT
TGTACCTTGTTCAGGTTTGTTCATTTTTGTTAGATTCTATTTAAAAGCCT
CTCTTAGTAGAGAGCAAACCCTGATGATCCTTAGCATCTTTGTTGGACGC
AACTGCATGTGATTGGGTCAATAAAGATATGATTTTTAAATTTCAATTAA
GTTTTTGAGGGGGCCTGCGAATTAGGCCTGGCAAAATTTTTTATAGCCAA
AAAAACTGACGCTGTAGGCAAAACTCCTAAACCCATAAAAAAGGGAAAAA
ATTGACGATTTTTCAAAGTTGAATTAAACGAAAATGATTAATACCATCGG
ATAGAGCATGAAATTTTGAGCAAAAAATTGTACTACAACAAGTCTAAAAC
GTAACAGATCTGTTTTCCATCAAAAGATGTTATGGTTCATAAACGTTGGC
CCTCTACTACCTTACCTTTTTATCAGACTTTTATCGTCAACATGAAAATA
TGAGCAATCTAATTGGCTTAAAAAACGCGTTCATAAATGCTGTATTTCAT
ATTTTACCGTACAAATACAAGACTGCGTTCAAAATAGGGGTCTGGTAAGC
GAGAGATCAATTTTGTACACTATCCTCAAATGTTTTCTTTTCATTCATAA
TAGAATAATACACAACATGTTTCAAAAGAGTTATGAAAAGAATGTTTTCA
TCTTTTTTTATGACCGTTCAATATTGTACTCTGTACTGTGTGATAACTAT
ATAACTATTACTTATCGTCCCAATTGAACAATTGCGCCTTTACAATTACA
GTATGTGGCCCCCAAAACGTCTATGCAAATTGAAATCTTTCTAGTGAATT
CAGAAAATATCCCTATGTTAAAAATCATTCTTGTGAATTAAGCTTCAACA
TGTCTAGTTTCTTTCCCCAATTGTTGGTTTGCCGTCACCCGACCGACCCT
ACCTCGAAACCTGCCGACCCAAAAAATTTTATTGCCATTTTAAAGAAGAT
TTTTCCTTCAAAAACTTCAAACAATAAAAAATCAAAACTCGTATCTTGTT
TGTCTCAAGTGGAAGAATCATAAATTCCCTGCTAGCACTTCTGTTTTTTA
TTCAAAATTACCTAAATGTAAACAAACTGTTAACCGTCGCCAAAATAAAA
AAAATTCCGACCGATCGACCCACCTCCAAAACTTAGGGTCGGGTGAAGGC
AAACCAACAATTTTTTAAGCCCAGCCCGACATCAAATCATAGCACCGACA
TCAAATTACTATCAATTGGTATGAAGGCAATGCTTTACGACTTAAAAAAG
TCAAAATTTACTTTTCTGTTTATCTTCATTACAAATGGTTGTTAAAAACG
GAGGTTAGTGGCCTCCAAAACGTCGATTCAATTAAATTGAAATAGACCTT
ATCGGATTTTTTTATATTAAAAAAAAACGATGCATTGTGGGATTGTTTCG
AGTGTATTACAATAGAAATCACTTAGGAATTCCTGGAGGGAATTCTATTG
TAATACACTCGAAACAATCCCACGATGCATCGCTTTTTTAGAAAAATCAA
AAACTCTGATAAGGTCTATTGTTAGAAATCCATCACTTAAACATGTCTCG
AATTAATGACACGATAAAATAATTACAAAAAAAATAATTAGTTTTTTATC
ATTTTGAAAAAAAATCATACCAAAACAATAAGTTTTTCAGGCTTGACTGA
GTGTAAAATCCCGCGCAAAATATAATCGTGAAATATTTCGAATTTTCTGA
AAAACTTTGAATTACTGAGTTGGTATGTCGGTATATGTTTATACTTTCCA
GAGTTTTTCAGGGGTTAATTTTCAATCTTGTTTGACTTTTGACGGTTTGG
TCCAAAAAAGGGATTTTCGAAAATAATTTTTGAAAAAAAAGAAGAAAAAA
ATTAGCCATGTTAAAAATGACATTTTTGTATTTTATTTTTTTTTCGGACT
TAAGAGAAATGTGTTAGGATCAAATCTGAAGCCAAGTTTAAAGTACAAAC
ATGGCTTATTAAGGCAAAACCTCCGTTTTGGGGGTTGTCTCCGTTTTGGT
GGCCATATACTGTATAACATTTCTTCAATTGGGAACGCTCAACCGTTATT
GAAAAATAGTTAATTTAAAGCTTCAAAGGATCATCTTTGCCAAATTTCTT
GATGTTACCACGATCTTATGTTTTTATATGATAAAAGACCTCACTAAATG
TGCTCTTATCTAGCTTAATTTTTTTGTGCATCATTTGAATTTAAAATCAG
CCGAGTTGAGTACAGTTCAAATTCAAGATAATACATGTTTTTTTTTTATA
AGCATAACGTTCATAAGCATACCAATACCTGAATTTGTCTAAAAAATAAG
CATATTACAAGCATATTACTGAGCTTGCTTTTGAGGTGTGTAAGTGAAAA
TGTTTAATACAGTACACAGCCTGCATTAAATTAACAAAAAGTTTCTTCAA
ACGGCATTTTAATTTTAAAAAATTACAAGCGTAAACGCGGCAATCGCTCA
CAACTTTCCTGAAACTGCTTATAAATCAAGCTATGTATAGCAACGACAGA
TTTTGAAAAAATTGGAGAATCGAATTTTCGGAAAAATAAGCATATTACAA
GCATATTACTGAGCTTGCTTTTGAGGTGTGTAAGTGAAAATGTTTAATAC
AGTACACAGCCTGCATTAAATTAACAAAAAGTTTCTTCAAACGGCATTTT
AATTTTAAAAAATTACAAGCGTAAACGCGGCAATCGCTCACAACTTTCCT
GAAAAATCTTATAAATATCCTCATGTATAGCAACGACAGATTTTGAAAAA
ATTGGAGAATCGAATTTTCGGTAAAATAAGCATATGATAAACATACTTCG
AGCCTGAGCCTAAAATATCTGTAAGCATAACTAAGCTTGTTTCCCAAAAA
ACATATGCTTATAAAAAAAAACATGTAGACCTTCTATGGACCTTTAATTT
TTTAAACAACAACTCGAAATTTTGTCACCTGGCTTTGTCACATGACGTCA
TCAGGTGGCTGAGTAAAAATTATAAATGGTTCGAAAGTATTCAAAACACA
ATAGCCCAAGCGGAGAGATCATGATCTGATGAAAATTGAGGTATAAAACG
TATGATAAGAAATTTGTAGTACTAGGCGAAACCAAATTAATTTATTGTTC
TACGACACCCCCTTCTCACAGACCCACTGGAAATATTGGCCAAAATATCG
TCCCCAGTGGAAAGATACCCTCAAATTTTTGTCCCCGCTGGAAATGATCA
GATAAGCAAATCTGCACTGCAAAATATTGTGCTATTTTCCCATCCCCACT
GAATTTTCTGGCTAGAAAACAATGAAATTAAAATCCCCGGCCATAAAAAA
CATAGGAATATAAATCACCTTCGAGTTTTGGTCCGTTATTTTTAATACCC
CCGCTGGCTGATGAAATCCCACCGGGTCTGTGAGAAGGGGGTGTTCTACA
GGACCGATCTATCCAGACCTACCCTGTTTTTTCCAAAATTCGAAAAATAA
TAATATTGAATTAGCAAAGCTGGAGGATGAACTTTATAATTTTTTTGTGG
ATCTTTTTAATTGAACAAGTTGAAAAAGTGTAAATTGATCCCAGAACTTA
GATGAATTTAAATGATCACAATGGAAATGGCACAAAAGTCGCTCATCGAT
AAATAGGAAAAAATCTACTGCTTCAAAACCTAACAAATTTCACAGATCTT
GACCTTCCGACCCTAGATTTTAAGAAAACACTTTAAAGAAATCACTTTTA
GGATCAATTTATTTTTACTGCTGGGTGCACCAAAAAAAAGTATACAACTT
TGTCGAGATGTTGTGAGATTCAGAATTCATATTTTTTTTTTTCATTCTTT
TTTTATGGCATAGAGGATGCTCTAACTTGAATTTTGAGCTATCATACATA
CAGGTTCGAAAAAGTAAAAAAACTGACTTTTTTTTACTGTCGAAATTTCA
AAAAATCATTAAAAACAGCGAGCAAACTTTTCTATTGACACTTACGTTCG
TTACACATAAAAATACCAAAAAAACACAACTGTGTTCATCAAAACTCGTT
ACGGAATTTAAGAATATGGTAAAACAAGCCCCATGTGGAATAATACTTTT
TGAAAAGCTGAAAAAATTTTTTTGCAAATCTCCAAGAGAGGTTTTGATGT
TATGTGTGTGCTATGTGAGAAAATTTTTGAAAAAATAGATCACCGTTCCT
CGACTAGTTACTCAAAAAACTTGGGTCTGCATTGAGTTTGCTGGTGTGGG
AAATGTTCATGACGTGCAAATAAGATGGACAAACTGTTGGCAAAATATAA
GATAAGAGAAAAAAGAATTTAAAAAAAAATGAAATTGTGTTTTTGTCATT
TTGTCTTATTTATAGCATCATAGCTTTTTTTTGATGCACCCGGTATACCA
ACTGACCGACCAACCGACCGACCAACCAACCGACCAACTTATATTTTTTT
TTATCATTGCTGATCGATAAATTTCCTATAAGCAGATTCATGTAAAAAAG
TTACAAAAAGGGTCGAGAAAAGCTCTGATCGAAGGAAAGTGGAGATTACC
TCATGCGCACAAATAGGAAAAACATGTTTAGGTGTGAAATTTTCAGCCAA
TCAGAGCTTTACTCGACGTTTGTTCGTGACTTTTTTACATGAATCTGCTA
ATAGGAAATTCGTGTATTCTCGGTAACATATACTTTTCCTTTTCACAGGT
CCACAAATCAGAAGGGACTTGGAGGATGAGATCAAAACAACCAAAAGACA
AAACAGAGATTTGTTGCAACAATCACAAAACAAAGATAAACGTATCCAGT
TATTAGAGGGTCAACTTCGAAGTAAAGAACAAAAATATCATGCAGATTTA
AAGAATATTCAAAGGCGTATCGCGGAGCTTGAACATGAGCTCGAAAATAA
AGCGAACACGATTGTATATTTGACTTCTACTATACAACAAAAGAAATCGA
AGAAAGCTACATTCGAGGGTCACGTGTCAAACCACGTGCTTGATGAACAA
CAACAACAACAACTACTATCGAATGTTTCTTCAAATGCCGCCAAATCACG
ATTCAGCCCCACTCCCCCACCACCCATAGTGATGGGCCAAACAAAACGAC
GTGATTATAACCTACGACGGAGTGGTGTCTCTCCTTCACCAAGCCGTGCA
GGAATAATTCAAGATGGTAGCTCACATCCAATGTTAGGTTCAGATTATGT
TTTACAGAATACGTTACCCAAAACGAATTCTACGCGTATTTCACAACGTT
ATAGTAAACAATCGAATTTAGAACATTCAAAATCTAACACTAAAAGAGAT
AAAGAATTTAAATTGGCAAATCATACGAGACCCAAACCTCCGGATTATGA
AGATTTCATCAAAATGAGTCAACCGGAAGTTATACGTAAATCATCTGCGG
AGCCTTTACCTCCAATTACCACTCGAAGTGGTCGTCAATTGCGTGAACCA
GTTCAAACGCGTAGCCGCGTGCATCGCCACGTGCGCCCAACTGCGAGCGC
TTTGGGAGAGGTAGAGACTGTCATAATGGATTCTAATCTATCTTCACCGG
AACGAACAATAAGAACATCCTTACAAAATTCAACAAAGTAAATTAATTTT
TTAGAGCTATATTTATTTTTTAAAGTGTGCCTCCAAATTGTGTATATTTT
GATTTTATTTTTAAATTGGTGTGCTTATATAAAGTTATGTCTATAGGTCT
CCCTTAAAGATTTGAAAGATTTGGATGTTCAGATATATGCACGTTTCTCT
ATAAGAATAAATTGTATAAGAACATAAGGCTTCGATTGCCAAAATGCTAA
GAACAAGCTAAGAACATCTCAAGGCTTTACGGACTCGAAAACACTCAATT
TTTTAGGAAAAACGGTTAAAAATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00059089-exon-scaffold_316-1575043694:307371..307776 | TCONS_00059089-exon-scaffold_316-1575043694:307371..307776 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1575043694:306413..306469 | TCONS_00059089-exon-scaffold_316-1575043694:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1575043694:300601..301778 | TCONS_00059089-exon-scaffold_316-1575043694:300601..301778 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1510915933:307371..307776 | TCONS_00059089-exon-scaffold_316-1510915933:307371..307776 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1510915933:306413..306469 | TCONS_00059089-exon-scaffold_316-1510915933:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1510915933:300601..301778 | TCONS_00059089-exon-scaffold_316-1510915933:300601..301778 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1491911889:307371..307776 | TCONS_00059089-exon-scaffold_316-1491911889:307371..307776 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1491911889:306413..306469 | TCONS_00059089-exon-scaffold_316-1491911889:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059089-exon-scaffold_316-1491911889:300601..301778 | TCONS_00059089-exon-scaffold_316-1491911889:300601..301778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:300601..307776 - |
Blast
BLAST of TCONS_00059089 vs. Swiss-Prot (Human)
Match: CCD92 (Coiled-coil domain-containing protein 92 OS=Homo sapiens GN=CCDC92 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.084e-19 Identity = 54/153 (35.29%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 295 QQKIQSLQHSIAFLQSQHATTLSSLHQEIERLQKKCKDLTNQVTLSVPSSEVV---PCSGPQIRR---DLEDEIKTTKRQNRDLLQQSQNKDKRIQLLEGQLRSKEQKYHADLKNIQRRIAELEHELENKANTIVYLTSTIQQKKSKKATFEG 735
+ ++ S Q ++ FLQ +HA+TL LH EI RLQ+ C DLT ++T V SSE ++++ +LE ++K + +N +LL++ + K+ I +LE ++ +E+KY +LK ++ L ELE +A+TI YLTS + K K + G
Sbjct: 24 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELT--VKSSEQTGDGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSG 174
The following BLAST results are available for this feature:
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