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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059090 ID=TCONS_00059090|Name=TCONS_00059090|organism=Clytia hemisphaerica|type=transcript|length=1431bp
agagtatatcttggaaacttgaacttgattcagTGTGAACTAAATTCATA
AATGGCTTGTGAGGTGTATCCTGACCAAACACAACAACAAAAGATCCAAA
GCCTTCAACATTCCATTGCATTCTTACAATCACAACACGCAACAACTTTG
AGCTCCTTGCATCAAGAGATCGAAAGGCTACAGAAGAAATGCAAAGATCT
AACAAATCAAGTAACACTATCAGTACCCTCGTCTGAAGTTGTACCTTGTT
CAGGTCCACAAATCAGAAGGGACTTGGAGGATGAGATCAAAACAACCAAA
AGACAAAACAGAGATTTGTTGCAACAATCACAAAACAAAGATAAACGTAT
CCAGTTATTAGAGGGTCAACTTCGAAGTAAAGAACAAAAATATCATGCAG
ATTTAAAGAATATTCAAAGGCGTATCGCGGAGCTTGAACATGAGCTCGAA
AATAAAGCGAACACGATTGTATATTTGACTTCTACTATACAACAAAAGAA
ATCGAAGAAAGCTACATTCGAGGGTCACGTGTCAAACCACGTGCTTGatg
aacaacaacaacaacaactactaTCGAATGTTTCTTCAAATGCCGCCAAA
TCACGATTCAGCCCCACTCCCCCACCACCCATAGTGATGGGCCAAACAAA
ACGACGTGATTATAACCTACGACGGAGTGGTGTCTCTCCTTCACCAAGCC
GTGCAGGAATAATTCAAGATGGTAGCTCACATCCAATGTTAGGTTCAGAT
TATGTTTTACAGAATACGTTACCCAAAACGAATTCTACGCGTATTTCACA
ACGTTATAGTAAACAATCGAATTTAGAACATTCAAAATCTAACACTAAAA
GAGATAAAGAATTTAAATTGGCAAATCATACGAGACCCAAACCTCCGGAT
TATGaagatttcatcaaaatgagTCAACCGGAAGTTATACGTAAATCATC
TGCGGAGCCTTTACCTCCAATTACCACTCGAAGTGGTCGTCAATTGCGTG
AACCAGTTCAAACGCGTAGCCGCGTGCATCGCCACGTGCGCCCAACTGCG
AGCGCTTTGGGAGAGGTAGAGACTGTCATAATGGATTCTAATCTATCTTC
ACCGGAACGAACAATAAGAACATCCTtacaaaattcaacaaagtaaatta
attttttagagctatatttattttttaaagtgtGCCTCCAAATTgtgtat
attttgattttatttttaaattggtGTGCTTATATAAAGTTATGTCTATA
GGTCTCCCTTaaagatttgaaagatttgGATGTTCAGATATATGCACGTT
TCTCTATAAGAATAaattgtataagaacataaggcttcgattgccaaaat
gctaagaacaagctaagaacatctcaaggctttacggactcgaaaacact
caattttttaggaaaaacggttaaaaatagt Run BLAST on NCBI transcript from alignment at scaffold_316:300601..307783- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059090 ID=TCONS_00059090|Name=TCONS_00059090|organism=Clytia hemisphaerica|type=transcript|length=7183bp|location=Sequence derived from alignment at scaffold_316:300601..307783- (Clytia hemisphaerica)
AGAGTATATCTTGGAAACTTGAACTTGATTCAGGTAACTCTCATCCTTGT
TGTTGCGAATACATCCTGTAGATGACTGATGTTGTTTTTTCTGAAAGCTT
GATTTCCTAGTGTGACTAACTGACAATCAATCCAGCCCTGACTGGTTGCG
GTAAAATGACATAATGTCACAGGACATCACATGGGTGCATATCCTGAATC
TCATAGTAGCCTTAATTCCAAATATATAACATATGCTGATTCTTCTTTAG
TGTGAACTAAATTCATAAATGGCTTGTGAGGTGTATCCTGACCAAACACA
ACAACAAAAGATCCAAAGCCTTCAACATTCCATTGCATTCTTACAATCAC
AACACGCAACAACTTTGAGCTCCTTGCATCAAGAGATCGAAAGGCTACAG
AAGAAATGCAAAGGTACATCCTTTTTTAAAAAAAGCAAAATATTTTGTGT
TTCTATGATAATATTGTTATAGTTAACTTACTAACTACCACAATTCGGAC
ATCCCCCTTCTTAAGCTTGAAAATTTTCCTCATAAGCAGGGAATTGTGAT
TGTTTACCTTTTAAATCCGAGTGACTTTGTGCGACTAGCAATAACTCATT
TAAAGCAATTTGAAAAACAATTAAAGTCTAATATGTGAGTAGATAAGATC
AATTAAAACTGAGTGGAGAGTATTTTTCAAACTGAAAATATACGAAAACT
GTAATGTCTTAATGTTTCATTTAATTTCTGAATTTTGTGGCTCCAATTGG
CTTGATTTGCTCTTCTGTAAATGTGTGTTTACATTAGGACTAAAACTGTA
GGACTTACAAACTTTTTCAAATTTATCTGAACATATTGTATTCCCAGGTG
CCTAGTAAGGCCTATCCCCCCACTTGTTAATTTTTCAATTTTTTCCAACC
CCTTGACCTTATTATAGGACACCCCCCTCCCGTTTTTTAATTTTGAGACC
AATTTCAGTTGTCAAAGTCTCTTATTTATCTCTAAATAGGCAGGTTTTGG
TCTATAATTATGTCTCCTTCTTGGGTATTTAGAGGTATGATTTCCAACCA
CCCCTCCCTCACTTATTGAAATTTGCAAATTTTCCCAACCCCCGTTTATT
CTGACCCCCCCCTCCCCCATTTATTTGGCACCTGAGAGTATGTTCCTTTT
GACAGCTAATTTGTTGTGTTTTTTTTTTCAAGTCAAAATTTTCTTGTTGA
TCTTCAATGTCTTCAAACCTATTTACAGTATAAAAGTTTGTGTTCTTCTA
AGCCAACAAGGTTGTTGTATTGCATAACCTTAATCCTTTTAAATTTTCAC
TGATTTATTTTTAGATCTAACAAATCAAGTAACACTATCAGTACCCTCGT
CTGAAGTTGTACCTTGTTCAGGTTTGTTCATTTTTGTTAGATTCTATTTA
AAAGCCTCTCTTAGTAGAGAGCAAACCCTGATGATCCTTAGCATCTTTGT
TGGACGCAACTGCATGTGATTGGGTCAATAAAGATATGATTTTTAAATTT
CAATTAAGTTTTTGAGGGGGCCTGCGAATTAGGCCTGGCAAAATTTTTTA
TAGCCAAAAAAACTGACGCTGTAGGCAAAACTCCTAAACCCATAAAAAAG
GGAAAAAATTGACGATTTTTCAAAGTTGAATTAAACGAAAATGATTAATA
CCATCGGATAGAGCATGAAATTTTGAGCAAAAAATTGTACTACAACAAGT
CTAAAACGTAACAGATCTGTTTTCCATCAAAAGATGTTATGGTTCATAAA
CGTTGGCCCTCTACTACCTTACCTTTTTATCAGACTTTTATCGTCAACAT
GAAAATATGAGCAATCTAATTGGCTTAAAAAACGCGTTCATAAATGCTGT
ATTTCATATTTTACCGTACAAATACAAGACTGCGTTCAAAATAGGGGTCT
GGTAAGCGAGAGATCAATTTTGTACACTATCCTCAAATGTTTTCTTTTCA
TTCATAATAGAATAATACACAACATGTTTCAAAAGAGTTATGAAAAGAAT
GTTTTCATCTTTTTTTATGACCGTTCAATATTGTACTCTGTACTGTGTGA
TAACTATATAACTATTACTTATCGTCCCAATTGAACAATTGCGCCTTTAC
AATTACAGTATGTGGCCCCCAAAACGTCTATGCAAATTGAAATCTTTCTA
GTGAATTCAGAAAATATCCCTATGTTAAAAATCATTCTTGTGAATTAAGC
TTCAACATGTCTAGTTTCTTTCCCCAATTGTTGGTTTGCCGTCACCCGAC
CGACCCTACCTCGAAACCTGCCGACCCAAAAAATTTTATTGCCATTTTAA
AGAAGATTTTTCCTTCAAAAACTTCAAACAATAAAAAATCAAAACTCGTA
TCTTGTTTGTCTCAAGTGGAAGAATCATAAATTCCCTGCTAGCACTTCTG
TTTTTTATTCAAAATTACCTAAATGTAAACAAACTGTTAACCGTCGCCAA
AATAAAAAAAATTCCGACCGATCGACCCACCTCCAAAACTTAGGGTCGGG
TGAAGGCAAACCAACAATTTTTTAAGCCCAGCCCGACATCAAATCATAGC
ACCGACATCAAATTACTATCAATTGGTATGAAGGCAATGCTTTACGACTT
AAAAAAGTCAAAATTTACTTTTCTGTTTATCTTCATTACAAATGGTTGTT
AAAAACGGAGGTTAGTGGCCTCCAAAACGTCGATTCAATTAAATTGAAAT
AGACCTTATCGGATTTTTTTATATTAAAAAAAAACGATGCATTGTGGGAT
TGTTTCGAGTGTATTACAATAGAAATCACTTAGGAATTCCTGGAGGGAAT
TCTATTGTAATACACTCGAAACAATCCCACGATGCATCGCTTTTTTAGAA
AAATCAAAAACTCTGATAAGGTCTATTGTTAGAAATCCATCACTTAAACA
TGTCTCGAATTAATGACACGATAAAATAATTACAAAAAAAATAATTAGTT
TTTTATCATTTTGAAAAAAAATCATACCAAAACAATAAGTTTTTCAGGCT
TGACTGAGTGTAAAATCCCGCGCAAAATATAATCGTGAAATATTTCGAAT
TTTCTGAAAAACTTTGAATTACTGAGTTGGTATGTCGGTATATGTTTATA
CTTTCCAGAGTTTTTCAGGGGTTAATTTTCAATCTTGTTTGACTTTTGAC
GGTTTGGTCCAAAAAAGGGATTTTCGAAAATAATTTTTGAAAAAAAAGAA
GAAAAAAATTAGCCATGTTAAAAATGACATTTTTGTATTTTATTTTTTTT
TCGGACTTAAGAGAAATGTGTTAGGATCAAATCTGAAGCCAAGTTTAAAG
TACAAACATGGCTTATTAAGGCAAAACCTCCGTTTTGGGGGTTGTCTCCG
TTTTGGTGGCCATATACTGTATAACATTTCTTCAATTGGGAACGCTCAAC
CGTTATTGAAAAATAGTTAATTTAAAGCTTCAAAGGATCATCTTTGCCAA
ATTTCTTGATGTTACCACGATCTTATGTTTTTATATGATAAAAGACCTCA
CTAAATGTGCTCTTATCTAGCTTAATTTTTTTGTGCATCATTTGAATTTA
AAATCAGCCGAGTTGAGTACAGTTCAAATTCAAGATAATACATGTTTTTT
TTTTATAAGCATAACGTTCATAAGCATACCAATACCTGAATTTGTCTAAA
AAATAAGCATATTACAAGCATATTACTGAGCTTGCTTTTGAGGTGTGTAA
GTGAAAATGTTTAATACAGTACACAGCCTGCATTAAATTAACAAAAAGTT
TCTTCAAACGGCATTTTAATTTTAAAAAATTACAAGCGTAAACGCGGCAA
TCGCTCACAACTTTCCTGAAACTGCTTATAAATCAAGCTATGTATAGCAA
CGACAGATTTTGAAAAAATTGGAGAATCGAATTTTCGGAAAAATAAGCAT
ATTACAAGCATATTACTGAGCTTGCTTTTGAGGTGTGTAAGTGAAAATGT
TTAATACAGTACACAGCCTGCATTAAATTAACAAAAAGTTTCTTCAAACG
GCATTTTAATTTTAAAAAATTACAAGCGTAAACGCGGCAATCGCTCACAA
CTTTCCTGAAAAATCTTATAAATATCCTCATGTATAGCAACGACAGATTT
TGAAAAAATTGGAGAATCGAATTTTCGGTAAAATAAGCATATGATAAACA
TACTTCGAGCCTGAGCCTAAAATATCTGTAAGCATAACTAAGCTTGTTTC
CCAAAAAACATATGCTTATAAAAAAAAACATGTAGACCTTCTATGGACCT
TTAATTTTTTAAACAACAACTCGAAATTTTGTCACCTGGCTTTGTCACAT
GACGTCATCAGGTGGCTGAGTAAAAATTATAAATGGTTCGAAAGTATTCA
AAACACAATAGCCCAAGCGGAGAGATCATGATCTGATGAAAATTGAGGTA
TAAAACGTATGATAAGAAATTTGTAGTACTAGGCGAAACCAAATTAATTT
ATTGTTCTACGACACCCCCTTCTCACAGACCCACTGGAAATATTGGCCAA
AATATCGTCCCCAGTGGAAAGATACCCTCAAATTTTTGTCCCCGCTGGAA
ATGATCAGATAAGCAAATCTGCACTGCAAAATATTGTGCTATTTTCCCAT
CCCCACTGAATTTTCTGGCTAGAAAACAATGAAATTAAAATCCCCGGCCA
TAAAAAACATAGGAATATAAATCACCTTCGAGTTTTGGTCCGTTATTTTT
AATACCCCCGCTGGCTGATGAAATCCCACCGGGTCTGTGAGAAGGGGGTG
TTCTACAGGACCGATCTATCCAGACCTACCCTGTTTTTTCCAAAATTCGA
AAAATAATAATATTGAATTAGCAAAGCTGGAGGATGAACTTTATAATTTT
TTTGTGGATCTTTTTAATTGAACAAGTTGAAAAAGTGTAAATTGATCCCA
GAACTTAGATGAATTTAAATGATCACAATGGAAATGGCACAAAAGTCGCT
CATCGATAAATAGGAAAAAATCTACTGCTTCAAAACCTAACAAATTTCAC
AGATCTTGACCTTCCGACCCTAGATTTTAAGAAAACACTTTAAAGAAATC
ACTTTTAGGATCAATTTATTTTTACTGCTGGGTGCACCAAAAAAAAGTAT
ACAACTTTGTCGAGATGTTGTGAGATTCAGAATTCATATTTTTTTTTTTC
ATTCTTTTTTTATGGCATAGAGGATGCTCTAACTTGAATTTTGAGCTATC
ATACATACAGGTTCGAAAAAGTAAAAAAACTGACTTTTTTTTACTGTCGA
AATTTCAAAAAATCATTAAAAACAGCGAGCAAACTTTTCTATTGACACTT
ACGTTCGTTACACATAAAAATACCAAAAAAACACAACTGTGTTCATCAAA
ACTCGTTACGGAATTTAAGAATATGGTAAAACAAGCCCCATGTGGAATAA
TACTTTTTGAAAAGCTGAAAAAATTTTTTTGCAAATCTCCAAGAGAGGTT
TTGATGTTATGTGTGTGCTATGTGAGAAAATTTTTGAAAAAATAGATCAC
CGTTCCTCGACTAGTTACTCAAAAAACTTGGGTCTGCATTGAGTTTGCTG
GTGTGGGAAATGTTCATGACGTGCAAATAAGATGGACAAACTGTTGGCAA
AATATAAGATAAGAGAAAAAAGAATTTAAAAAAAAATGAAATTGTGTTTT
TGTCATTTTGTCTTATTTATAGCATCATAGCTTTTTTTTGATGCACCCGG
TATACCAACTGACCGACCAACCGACCGACCAACCAACCGACCAACTTATA
TTTTTTTTTATCATTGCTGATCGATAAATTTCCTATAAGCAGATTCATGT
AAAAAAGTTACAAAAAGGGTCGAGAAAAGCTCTGATCGAAGGAAAGTGGA
GATTACCTCATGCGCACAAATAGGAAAAACATGTTTAGGTGTGAAATTTT
CAGCCAATCAGAGCTTTACTCGACGTTTGTTCGTGACTTTTTTACATGAA
TCTGCTAATAGGAAATTCGTGTATTCTCGGTAACATATACTTTTCCTTTT
CACAGGTCCACAAATCAGAAGGGACTTGGAGGATGAGATCAAAACAACCA
AAAGACAAAACAGAGATTTGTTGCAACAATCACAAAACAAAGATAAACGT
ATCCAGTTATTAGAGGGTCAACTTCGAAGTAAAGAACAAAAATATCATGC
AGATTTAAAGAATATTCAAAGGCGTATCGCGGAGCTTGAACATGAGCTCG
AAAATAAAGCGAACACGATTGTATATTTGACTTCTACTATACAACAAAAG
AAATCGAAGAAAGCTACATTCGAGGGTCACGTGTCAAACCACGTGCTTGA
TGAACAACAACAACAACAACTACTATCGAATGTTTCTTCAAATGCCGCCA
AATCACGATTCAGCCCCACTCCCCCACCACCCATAGTGATGGGCCAAACA
AAACGACGTGATTATAACCTACGACGGAGTGGTGTCTCTCCTTCACCAAG
CCGTGCAGGAATAATTCAAGATGGTAGCTCACATCCAATGTTAGGTTCAG
ATTATGTTTTACAGAATACGTTACCCAAAACGAATTCTACGCGTATTTCA
CAACGTTATAGTAAACAATCGAATTTAGAACATTCAAAATCTAACACTAA
AAGAGATAAAGAATTTAAATTGGCAAATCATACGAGACCCAAACCTCCGG
ATTATGAAGATTTCATCAAAATGAGTCAACCGGAAGTTATACGTAAATCA
TCTGCGGAGCCTTTACCTCCAATTACCACTCGAAGTGGTCGTCAATTGCG
TGAACCAGTTCAAACGCGTAGCCGCGTGCATCGCCACGTGCGCCCAACTG
CGAGCGCTTTGGGAGAGGTAGAGACTGTCATAATGGATTCTAATCTATCT
TCACCGGAACGAACAATAAGAACATCCTTACAAAATTCAACAAAGTAAAT
TAATTTTTTAGAGCTATATTTATTTTTTAAAGTGTGCCTCCAAATTGTGT
ATATTTTGATTTTATTTTTAAATTGGTGTGCTTATATAAAGTTATGTCTA
TAGGTCTCCCTTAAAGATTTGAAAGATTTGGATGTTCAGATATATGCACG
TTTCTCTATAAGAATAAATTGTATAAGAACATAAGGCTTCGATTGCCAAA
ATGCTAAGAACAAGCTAAGAACATCTCAAGGCTTTACGGACTCGAAAACA
CTCAATTTTTTAGGAAAAACGGTTAAAAATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00059090-exon-scaffold_316-1575043694:307751..307783 | TCONS_00059090-exon-scaffold_316-1575043694:307751..307783 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1575043694:307371..307533 | TCONS_00059090-exon-scaffold_316-1575043694:307371..307533 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1575043694:306413..306469 | TCONS_00059090-exon-scaffold_316-1575043694:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1575043694:300601..301778 | TCONS_00059090-exon-scaffold_316-1575043694:300601..301778 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1510915933:307751..307783 | TCONS_00059090-exon-scaffold_316-1510915933:307751..307783 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1510915933:307371..307533 | TCONS_00059090-exon-scaffold_316-1510915933:307371..307533 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1510915933:306413..306469 | TCONS_00059090-exon-scaffold_316-1510915933:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1510915933:300601..301778 | TCONS_00059090-exon-scaffold_316-1510915933:300601..301778 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1491911889:307751..307783 | TCONS_00059090-exon-scaffold_316-1491911889:307751..307783 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1491911889:307371..307533 | TCONS_00059090-exon-scaffold_316-1491911889:307371..307533 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1491911889:306413..306469 | TCONS_00059090-exon-scaffold_316-1491911889:306413..306469 | Clytia hemisphaerica | exon |
| TCONS_00059090-exon-scaffold_316-1491911889:300601..301778 | TCONS_00059090-exon-scaffold_316-1491911889:300601..301778 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:300601..307783 - |
Blast
BLAST of TCONS_00059090 vs. Swiss-Prot (Human)
Match: CCD92 (Coiled-coil domain-containing protein 92 OS=Homo sapiens GN=CCDC92 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.231e-19 Identity = 54/153 (35.29%), Postives = 90/153 (58.82%), Query Frame = 1
Query: 85 QQKIQSLQHSIAFLQSQHATTLSSLHQEIERLQKKCKDLTNQVTLSVPSSEVV---PCSGPQIRR---DLEDEIKTTKRQNRDLLQQSQNKDKRIQLLEGQLRSKEQKYHADLKNIQRRIAELEHELENKANTIVYLTSTIQQKKSKKATFEG 525
+ ++ S Q ++ FLQ +HA+TL LH EI RLQ+ C DLT ++T V SSE ++++ +LE ++K + +N +LL++ + K+ I +LE ++ +E+KY +LK ++ L ELE +A+TI YLTS + K K + G
Sbjct: 24 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELT--VKSSEQTGDGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSG 174
The following BLAST results are available for this feature:
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