|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059096 ID=TCONS_00059096|Name=TCONS_00059096|organism=Clytia hemisphaerica|type=transcript|length=2033bp
CAATGCTTTGTTGCAATATCAATTATGGTATCTATGCTTTGTTGCAATAT
CAATTATGGTATCAATGCTTTGTTGCAATACCAATTACGGTATCAATGCT
TTGTTGCAATACCAACTATGCTATCGGTGTTTAGTTGCAATTTGAATTAT
GGTATCAATGCTTTGTTGCAATACCAACTGTAATATCAATACTCTGTTAC
AATATCAATTATGGTATCAATGCCCTGTTGCAATATCAATTATGGTATCA
ATGCTTTGTTGCAATACCAATTATGGTATCAATGCTTTGTTGCAATACCA
ATTATGGTATCAATGCTTTGTTGCAATACCAATTACAGTATCAATGCTTT
GTTGCAATACCAACTGTAATATCAATACTCTGTTACAATATCAATTATGG
TATCAATGCCCTGTTGCAATATCAATTATGGTATCAATGCTTTGTTGCAA
TACCAATTATGGTATCAATGCTTTGTTGCAATACCAATTATGGTATCAAT
GCTTTGTTGCAATACCAATTACAGTATCAATGCTTTGTTGCAATACCAAC
TGTAATATCAATACTCTGTTACAATATCAATTATGGTATCAATGCCCTGT
TGCAATATCAATTATGGTATCAATGCTTTGTTGCAATACCAATTATGGTA
TCAATGCTTTGTTGCAATACCAATTATGGTATCAATGCNTCTGTTACAAT
ATCAATTATGGTATCAATGCTCTGTTGCAATATCAATTACGGTATCAATG
CTTTGTTGCACTACCGACTATGGTATCAATGCTTTGTTGCAATACCACAT
TATCTTCAGGTAtaagagttatttttaaaaacttttttcatccttatttt
ATTAAGGCATCCCCGAAGAACCCTCATTAGTGGAAAGGATTGAAGGCATC
AAAGACGAAAAACAATCATCTGGTTTTTACTCCCCCACAGGAAGTCCTTT
AGTCAAACTGGCATTCGAGGGTGGCAAACGACTAATTTCGTCCAAAGATG
GAAATCCAAAAAGAATGCCTAAAGAGCCTCTCACAACAGATTTATAATCA
AAGCCATTATTGATAAGTTTATTTCGACAGAAAATCTTTTAGTTTCATTC
TGATGACTATTCTTCACTTTTCAGGATTTTTACGTATCAGCAAAATGCTG
CAGATAGAAATCCAACACATTACTTTTTGCCAATCAGAGGTGAAAATCTT
TTTACCAAAGTCAAAAACAGACCAAATTAGAGAGGGGAATACCGTCTTCA
TCAGTGCCAAAGGTTCTTATTGCCCTATTTACTGGTTACAGAAATATATC
AATCTTGCTAAATTATCCCGACCAAACGATTATCTGTTCTGCCGACTCTT
TAAGTGTAAGATTGGTCATTCGGCCCATGGAAACCTACCAATTTCATACA
CCACAGCCAGAGACTCATCGAAGGGCCACTTAACCGGTATTGTTGAAGAC
AAGGCTAAGTATGGCTTGCATTCGCTTCGTTCTGGGGTTGCAACCGAATC
AGCTAACAACGGTGTGTCAGATAGAATGATCTCAAAACATGGTCGCTGGT
CGTCCAATACTAGTCGTGATACGTACATTAAAGACAAACCACTGAACAGA
TTTAAAGTTTCAAGAcaattatgaatttgaaaatgatgtttAAAATTTCC
GCTGCTTGTCTTTTCTTCCTCGTGTTCACTGCAAGATCTATCCAATAAAC
TATGCCTTATGTGTCTATTATTGTTTGAGATTTGAGAAGAGAAAATAGCT
GAGAAGTGTGATTTCCNAAATTCTAGTCTGTGTAACGTCACTTTTgaaat
tgagacaggggtatattaGTTTTTGACATAGTCTGTGTAATGACCTTTTA
AATCTATAAAAACTCTCATTAATTTCCTATATTGGCCAATAGAATTGGGG
TTAAATATTCTTTGTGATCTGAAAAGGTGTGATTTATTCGTCAGCACTCT
AGCCACGCCTATTTTGACTAAATTCTACTTGTTCTCTAATACAAGAGAAA
TTCTAGTCTGTgtaacgtcatttttgaaattga Run BLAST on NCBI protein sequence of TCONS_00059096-protein >TCONS_00059096-protein ID=TCONS_00059096-protein|Name=TCONS_00059096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MVSMLCCNTNCNINTLLQYQLWYQCPVAISIMVSMLCCNTNYGINALLQY
QLWYQCFVAIPITVSMLCCNTNCNINTLLQYQLWYQCPVAISIMVSMLCC
NTNYGINALLQYQLWYQCFVAIPITVSMLCCNTNCNINTLLQYQLWYQCP
VAISIMVSMLCCNTNYGINALLQYQLWYQCXCYNINYGINALLQYQLRYQ
CFVALPTMVSMLCCNTTLSSGIRVIFKNFFHPYFIKASPKNPH Run BLAST on NCBI transcript from alignment at scaffold_316:111936..113968 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059096 ID=TCONS_00059096|Name=TCONS_00059096|organism=Clytia hemisphaerica|type=transcript|length=2033bp|location=Sequence derived from alignment at scaffold_316:111936..113968 (Clytia hemisphaerica)
tcaatttcaaaaatgacgttacACAGACTAGAATTTCTCTTGTATTAGAG
AACAAGTAGAATTTAGTCAAAATAGGCGTGGCTAGAGTGCTGACGAATAA
ATCACACCTTTTCAGATCACAAAGAATATTTAACCCCAATTCTATTGGCC
AATATAGGAAATTAATGAGAGTTTTTATAGATTTAAAAGGTCATTACACA
GACTATGTCAAAAACtaatatacccctgtctcaatttcAAAAGTGACGTT
ACACAGACTAGAATTTNGGAAATCACACTTCTCAGCTATTTTCTCTTCTC
AAATCTCAAACAATAATAGACACATAAGGCATAGTTTATTGGATAGATCT
TGCAGTGAACACGAGGAAGAAAAGACAAGCAGCGGAAATTTTaaacatca
ttttcaaattcataattgTCTTGAAACTTTAAATCTGTTCAGTGGTTTGT
CTTTAATGTACGTATCACGACTAGTATTGGACGACCAGCGACCATGTTTT
GAGATCATTCTATCTGACACACCGTTGTTAGCTGATTCGGTTGCAACCCC
AGAACGAAGCGAATGCAAGCCATACTTAGCCTTGTCTTCAACAATACCGG
TTAAGTGGCCCTTCGATGAGTCTCTGGCTGTGGTGTATGAAATTGGTAGG
TTTCCATGGGCCGAATGACCAATCTTACACTTAAAGAGTCGGCAGAACAG
ATAATCGTTTGGTCGGGATAATTTAGCAAGATTGATATATTTCTGTAACC
AGTAAATAGGGCAATAAGAACCTTTGGCACTGATGAAGACGGTATTCCCC
TCTCTAATTTGGTCTGTTTTTGACTTTGGTAAAAAGATTTTCACCTCTGA
TTGGCAAAAAGTAATGTGTTGGATTTCTATCTGCAGCATTTTGCTGATAC
GTAAAAATCCTGAAAAGTGAAGAATAGTCATCAGAATGAAACTAAAAGAT
TTTCTGTCGAAATAAACTTATCAATAATGGCTTTGATTATAAATCTGTTG
TGAGAGGCTCTTTAGGCATTCTTTTTGGATTTCCATCTTTGGACGAAATT
AGTCGTTTGCCACCCTCGAATGCCAGTTTGACTAAAGGACTTCCTGTGGG
GGAGTAAAAACCAGATGATTGTTTTTCGTCTTTGATGCCTTCAATCCTTT
CCACTAATGAGGGTTCTTCGGGGATGCCTTAATaaaataaggatgaaaaa
agtttttaaaaataactcttaTACCTGAAGATAATGTGGTATTGCAACAA
AGCATTGATACCATAGTCGGTAGTGCAACAAAGCATTGATACCGTAATTG
ATATTGCAACAGAGCATTGATACCATAATTGATATTGTAACAGANGCATT
GATACCATAATTGGTATTGCAACAAAGCATTGATACCATAATTGGTATTG
CAACAAAGCATTGATACCATAATTGATATTGCAACAGGGCATTGATACCA
TAATTGATATTGTAACAGAGTATTGATATTACAGTTGGTATTGCAACAAA
GCATTGATACTGTAATTGGTATTGCAACAAAGCATTGATACCATAATTGG
TATTGCAACAAAGCATTGATACCATAATTGGTATTGCAACAAAGCATTGA
TACCATAATTGATATTGCAACAGGGCATTGATACCATAATTGATATTGTA
ACAGAGTATTGATATTACAGTTGGTATTGCAACAAAGCATTGATACTGTA
ATTGGTATTGCAACAAAGCATTGATACCATAATTGGTATTGCAACAAAGC
ATTGATACCATAATTGGTATTGCAACAAAGCATTGATACCATAATTGATA
TTGCAACAGGGCATTGATACCATAATTGATATTGTAACAGAGTATTGATA
TTACAGTTGGTATTGCAACAAAGCATTGATACCATAATTCAAATTGCAAC
TAAACACCGATAGCATAGTTGGTATTGCAACAAAGCATTGATACCGTAAT
TGGTATTGCAACAAAGCATTGATACCATAATTGATATTGCAACAAAGCAT
AGATACCATAATTGATATTGCAACAAAGCATTG Coding sequence (CDS) from alignment at scaffold_316:111936..113968 >TCONS_00059096 ID=TCONS_00059096|Name=TCONS_00059096|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_316:111936..113968 (Clytia hemisphaerica)
CTAATGAGGGTTCTTCGGGGATGCCTTAATaaaataaggatgaaaaaagt
ttttaaaaataactcttaTACCTGAAGATAATGTGGTATTGCAACAAAGC
ATTGATACCATAGTCGGTAGTGCAACAAAGCATTGATACCGTAATTGATA
TTGCAACAGAGCATTGATACCATAATTGATATTGTAACAGANGCATTGAT
ACCATAATTGGTATTGCAACAAAGCATTGATACCATAATTGGTATTGCAA
CAAAGCATTGATACCATAATTGATATTGCAACAGGGCATTGATACCATAA
TTGATATTGTAACAGAGTATTGATATTACAGTTGGTATTGCAACAAAGCA
TTGATACTGTAATTGGTATTGCAACAAAGCATTGATACCATAATTGGTAT
TGCAACAAAGCATTGATACCATAATTGGTATTGCAACAAAGCATTGATAC
CATAATTGATATTGCAACAGGGCATTGATACCATAATTGATATTGTAACA
GAGTATTGATATTACAGTTGGTATTGCAACAAAGCATTGATACTGTAATT
GGTATTGCAACAAAGCATTGATACCATAATTGGTATTGCAACAAAGCATT
GATACCATAATTGGTATTGCAACAAAGCATTGATACCATAATTGATATTG
CAACAGGGCATTGATACCATAATTGATATTGTAACAGAGTATTGATATTA
CAGTTGGTATTGCAACAAAGCATTGATACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059096-exon-scaffold_316-1491911889:111936..113968 | TCONS_00059096-exon-scaffold_316-1491911889:111936..113968 | Clytia hemisphaerica | exon |
| TCONS_00059096-exon-scaffold_316-1510915933:111936..113968 | TCONS_00059096-exon-scaffold_316-1510915933:111936..113968 | Clytia hemisphaerica | exon |
| TCONS_00059096-exon-scaffold_316-1575043694:111936..113968 | TCONS_00059096-exon-scaffold_316-1575043694:111936..113968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:111936..113968 . |
Blast
The following BLAST results are available for this feature:
|
