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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059102 ID=TCONS_00059102|Name=TCONS_00059102|organism=Clytia hemisphaerica|type=transcript|length=2417bp
TTTAGATCTGATCTCAAAgattaacaataaaaacaaataatcgAAAACCA
AAagaagaaagagctagagagcGAACTCAACATGGCGAACATTACGTCAT
GTAATGACATCATGAAACAGATTCAATCAGGAGGGACAATCCATCCTGGT
ATCATCAACAACATCTGTGGTTTATATGATCAACGTCCCAACACAACAAT
TTGGAATGCCGAAGAAGAACTTTTTTACCAATATTGCTGTAATCCGGCTC
CACAGTTTCTTCATAACATCTCTGGGAATTCTTTCGTAACAGACAAAATA
ATGGATTTTAAGGACTTTTTGGTTTCTGGAGACAACCACTGCAGTGGATA
TCAGAAACATATCTGTGAGCTTTGGGATCTGTTGACCATCATTATTCTCT
CTGTGTTAACACCTATTGGGCTTGCAACAAATACAACTGTTCTAAGCCTG
GTTGGGAAGATCAAGAAATACCGTGAATGCGCCTCTGGCTATCTTCGTAA
TCTGGCAGTTGTAAACTTCCTTGTTATCTTCCAAACGATTTCAATGGTCA
TTTTATACGAATCTGGTGTCATGTACAAATTTAGCATTGGAGTTCAGAAT
TACTTTTTACCAACAATCGAGTTAGTGCTTGGTTCGGCTGCAATGCTTTT
CGTAGCAGCGTTAGCGCTAGAAAGATATAAAGCCGTCCGCAAACCTAACA
ATGGTGCACGGAAAAATCGATTTCGTATTTTTATCTGGGTCTATTGTTTC
GTCCTCCTCATCTGTGGTTTGATTCGAATCAAATATTCGTATGGTGCTCA
CGGTCGTGTGTTTTTCTATGTCACTGCCGTTTTAGGATTTATTCTGCCGT
TTTTGGTCGTCGTTGGAGCATATTGTGTTGTCATCTTTTCGGCTTTCAAA
TACAGAAATACGAAAATCCAAAGTGGTGTTAGTGAGAATATCCAATCTTT
GACCAGTGCGATTGAAGTCGATGAcactggtgaaaatttgaaggaTGAAG
AAGGCAGTGCTGAGCATCTCATTTTCATTGAAAGCAACGATGTTCCAAAG
ATGTGGAAATCAAACCTGAGCATACCTGATTTGAACCTAAAAGAGTCATT
TGCAAACTTTGGAATCCAAGATATCTCATTGGTGAATTATACGCGATCAC
AAGACATcaagatttcttttcaaatcggAGCAATGATTCTGCCAATAATC
TGTGGTTGGATCTACTACATCTCCAGTTTCGCCTACGAGAAGATTTCTCG
TCGTTTTATCTTTGGCATGCAGTATTGGTCTGTCTTATTTGTCCCGTTCA
TTGTTTCTTGTCTAAGTCCTCTCATCTTTATGATTTTTACATGGTCCATG
TGGAGACGTGCGTTTTGTCAGTGGTACAAGAAGTTTTTACATGATTTGGA
ACAAGAACATACTGTTTTATGAACTATAGATTTTACTGGAAAATGATTTT
AGCGAGCTTATTTTTTTCAGTGGTACAAGAGAGTTTTTACATTATTTAAG
GTaaagcacttttaccgtcctcgattttgtgggtcaaaactgcgggttat
tccaaatcccTCCAGTCAATCCgctgtcctcaaaagtgcaaatacataaa
ctcgctactacTTGTATGATTAGAACGTTAATCATTTGGAGACAATGCAA
TTAAAATATCCTTAAAGGGATAAGGACAGTATACACGAGTTAACGGATTT
ATCTGAAGTTTTGCATATTTCTTAGGTGAAAGTTTTATGGGTGATTGttt
acatttctatttttgGGACCTGGGGAAGAGTTTTATTTTAACAATATTCT
TTTTATcacaattatcattatccttcaataaattttttctcgGTCATTTT
TGCTTTCGAACATTGAAGCATAGTGGCGACTTGTACGTTCAATGTTATAA
ATATTTGGAGacttttgaagcgttttttgtgtttttctttcaaatttaga
ATAAAAGTATTTTATTATATAATAATTCTAATTTTTCCTAGCACAATTAT
ATTTGTCAATTTgttggaaaatgttttttcttgtcatttctaaaataaac
tttattaagtcttttcaaattttcattccaTACTGTTAGCTTATCTTTCT
CAGCTCATAAGCTCATCGAAATTGGCCTACCGTTTCCTTCAAAAGCATGC
ATGAGTTTTTTTGCTTCTGATATGGAGAGGCCTGAGTTTCGGCACTCCTT
GATAAGAACGGTACAAGAACGTCAAAAGTAGGCTTCCTTATCATACCAGT
AACACTTAGTTAATGGGTTAAGTAATTCAATGACCTAAAGATATTCAGGG
AGGTTAAGAAGCTTTCAGCTTATTCAGCATCTTAAACATTTCTGAGAAAA
GACGCTTtgtttgttcttaaaagtcAATCCTCGTTTTTATTCTCCAGATA
ACtttttaaggcttggg Run BLAST on NCBI protein sequence of TCONS_00059102-protein >TCONS_00059102-protein ID=TCONS_00059102-protein|Name=TCONS_00059102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MANITSCNDIMKQIQSGGTIHPGIINNICGLYDQRPNTTIWNAEEELFYQ
YCCNPAPQFLHNISGNSFVTDKIMDFKDFLVSGDNHCSGYQKHICELWDL
LTIIILSVLTPIGLATNTTVLSLVGKIKKYRECASGYLRNLAVVNFLVIF
QTISMVILYESGVMYKFSIGVQNYFLPTIELVLGSAAMLFVAALALERYK
AVRKPNNGARKNRFRIFIWVYCFVLLICGLIRIKYSYGAHGRVFFYVTAV
LGFILPFLVVVGAYCVVIFSAFKYRNTKIQSGVSENIQSLTSAIEVDDTG
ENLKDEEGSAEHLIFIESNDVPKMWKSNLSIPDLNLKESFANFGIQDISL
VNYTRSQDIKISFQIGAMILPIICGWIYYISSFAYEKISRRFIFGMQYWS
VLFVPFIVSCLSPLIFMIFTWSMWRRAFCQWYKKFLHDLEQEHTVL Run BLAST on NCBI transcript from alignment at scaffold_316:264292..266708 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059102 ID=TCONS_00059102|Name=TCONS_00059102|organism=Clytia hemisphaerica|type=transcript|length=2417bp|location=Sequence derived from alignment at scaffold_316:264292..266708 (Clytia hemisphaerica)
cccaagccttaaaaaGTTATCTGGAGAATAAAAACGAGGATTgactttta
agaacaaacaAAGCGTCTTTTCTCAGAAATGTTTAAGATGCTGAATAAGC
TGAAAGCTTCTTAACCTCCCTGAATATCTTTAGGTCATTGAATTACTTAA
CCCATTAACTAAGTGTTACTGGTATGATAAGGAAGCCTACTTTTGACGTT
CTTGTACCGTTCTTATCAAGGAGTGCCGAAACTCAGGCCTCTCCATATCA
GAAGCAAAAAAACTCATGCATGCTTTTGAAGGAAACGGTAGGCCAATTTC
GATGAGCTTATGAGCTGAGAAAGATAAGCTAACAGTAtggaatgaaaatt
tgaaaagacttaataaagtttattttagaaatgacaagaaaaaacatttt
ccaacAAATTGACAAATATAATTGTGCTAGGAAAAATTAGAATTATTATA
TAATAAAATACTTTTATtctaaatttgaaagaaaaacacaaaaaacgctt
caaaagtCTCCAAATATTTATAACATTGAACGTACAAGTCGCCACTATGC
TTCAATGTTCGAAAGCAAAAATGACcgagaaaaaatttattgaaggataa
tgataattgtgATAAAAAGAATATTGTTAAAATAAAACTCTTCCCCAGGT
CCcaaaaatagaaatgtaaaCAATCACCCATAAAACTTTCACCTAAGAAA
TATGCAAAACTTCAGATAAATCCGTTAACTCGTGTATACTGTCCTTATCC
CTTTAAGGATATTTTAATTGCATTGTCTCCAAATGATTAACGTTCTAATC
ATACAAgtagtagcgagtttatgtatttgcacttttgaggacagcGGATT
GACTGGAgggatttggaataacccgcagttttgacccacaaaatcgagga
cggtaaaagtgctttACCTTAAATAATGTAAAAACTCTCTTGTACCACTG
AAAAAAATAAGCTCGCTAAAATCATTTTCCAGTAAAATCTATAGTTCATA
AAACAGTATGTTCTTGTTCCAAATCATGTAAAAACTTCTTGTACCACTGA
CAAAACGCACGTCTCCACATGGACCATGTAAAAATCATAAAGATGAGAGG
ACTTAGACAAGAAACAATGAACGGGACAAATAAGACAGACCAATACTGCA
TGCCAAAGATAAAACGACGAGAAATCTTCTCGTAGGCGAAACTGGAGATG
TAGTAGATCCAACCACAGATTATTGGCAGAATCATTGCTccgatttgaaa
agaaatcttgATGTCTTGTGATCGCGTATAATTCACCAATGAGATATCTT
GGATTCCAAAGTTTGCAAATGACTCTTTTAGGTTCAAATCAGGTATGCTC
AGGTTTGATTTCCACATCTTTGGAACATCGTTGCTTTCAATGAAAATGAG
ATGCTCAGCACTGCCTTCTTCAtccttcaaattttcaccagtgTCATCGA
CTTCAATCGCACTGGTCAAAGATTGGATATTCTCACTAACACCACTTTGG
ATTTTCGTATTTCTGTATTTGAAAGCCGAAAAGATGACAACACAATATGC
TCCAACGACGACCAAAAACGGCAGAATAAATCCTAAAACGGCAGTGACAT
AGAAAAACACACGACCGTGAGCACCATACGAATATTTGATTCGAATCAAA
CCACAGATGAGGAGGACGAAACAATAGACCCAGATAAAAATACGAAATCG
ATTTTTCCGTGCACCATTGTTAGGTTTGCGGACGGCTTTATATCTTTCTA
GCGCTAACGCTGCTACGAAAAGCATTGCAGCCGAACCAAGCACTAACTCG
ATTGTTGGTAAAAAGTAATTCTGAACTCCAATGCTAAATTTGTACATGAC
ACCAGATTCGTATAAAATGACCATTGAAATCGTTTGGAAGATAACAAGGA
AGTTTACAACTGCCAGATTACGAAGATAGCCAGAGGCGCATTCACGGTAT
TTCTTGATCTTCCCAACCAGGCTTAGAACAGTTGTATTTGTTGCAAGCCC
AATAGGTGTTAACACAGAGAGAATAATGATGGTCAACAGATCCCAAAGCT
CACAGATATGTTTCTGATATCCACTGCAGTGGTTGTCTCCAGAAACCAAA
AAGTCCTTAAAATCCATTATTTTGTCTGTTACGAAAGAATTCCCAGAGAT
GTTATGAAGAAACTGTGGAGCCGGATTACAGCAATATTGGTAAAAAAGTT
CTTCTTCGGCATTCCAAATTGTTGTGTTGGGACGTTGATCATATAAACCA
CAGATGTTGTTGATGATACCAGGATGGATTGTCCCTCCTGATTGAATCTG
TTTCATGATGTCATTACATGACGTAATGTTCGCCATGTTGAGTTCgctct
ctagctctttcttctTTTGGTTTTcgattatttgtttttattgttaatcT
TTGAGATCAGATCTAAA Coding sequence (CDS) from alignment at scaffold_316:264292..266708 >TCONS_00059102 ID=TCONS_00059102|Name=TCONS_00059102|organism=Clytia hemisphaerica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_316:264292..266708 (Clytia hemisphaerica)
TCATAAAACAGTATGTTCTTGTTCCAAATCATGTAAAAACTTCTTGTACC
ACTGACAAAACGCACGTCTCCACATGGACCATGTAAAAATCATAAAGATG
AGAGGACTTAGACAAGAAACAATGAACGGGACAAATAAGACAGACCAATA
CTGCATGCCAAAGATAAAACGACGAGAAATCTTCTCGTAGGCGAAACTGG
AGATGTAGTAGATCCAACCACAGATTATTGGCAGAATCATTGCTccgatt
tgaaaagaaatcttgATGTCTTGTGATCGCGTATAATTCACCAATGAGAT
ATCTTGGATTCCAAAGTTTGCAAATGACTCTTTTAGGTTCAAATCAGGTA
TGCTCAGGTTTGATTTCCACATCTTTGGAACATCGTTGCTTTCAATGAAA
ATGAGATGCTCAGCACTGCCTTCTTCAtccttcaaattttcaccagtgTC
ATCGACTTCAATCGCACTGGTCAAAGATTGGATATTCTCACTAACACCAC
TTTGGATTTTCGTATTTCTGTATTTGAAAGCCGAAAAGATGACAACACAA
TATGCTCCAACGACGACCAAAAACGGCAGAATAAATCCTAAAACGGCAGT
GACATAGAAAAACACACGACCGTGAGCACCATACGAATATTTGATTCGAA
TCAAACCACAGATGAGGAGGACGAAACAATAGACCCAGATAAAAATACGA
AATCGATTTTTCCGTGCACCATTGTTAGGTTTGCGGACGGCTTTATATCT
TTCTAGCGCTAACGCTGCTACGAAAAGCATTGCAGCCGAACCAAGCACTA
ACTCGATTGTTGGTAAAAAGTAATTCTGAACTCCAATGCTAAATTTGTAC
ATGACACCAGATTCGTATAAAATGACCATTGAAATCGTTTGGAAGATAAC
AAGGAAGTTTACAACTGCCAGATTACGAAGATAGCCAGAGGCGCATTCAC
GGTATTTCTTGATCTTCCCAACCAGGCTTAGAACAGTTGTATTTGTTGCA
AGCCCAATAGGTGTTAACACAGAGAGAATAATGATGGTCAACAGATCCCA
AAGCTCACAGATATGTTTCTGATATCCACTGCAGTGGTTGTCTCCAGAAA
CCAAAAAGTCCTTAAAATCCATTATTTTGTCTGTTACGAAAGAATTCCCA
GAGATGTTATGAAGAAACTGTGGAGCCGGATTACAGCAATATTGGTAAAA
AAGTTCTTCTTCGGCATTCCAAATTGTTGTGTTGGGACGTTGATCATATA
AACCACAGATGTTGTTGATGATACCAGGATGGATTGTCCCTCCTGATTGA
ATCTGTTTCATGATGTCATTACATGACGTAATGTTCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059102-exon-scaffold_316-1491911889:264292..266708 | TCONS_00059102-exon-scaffold_316-1491911889:264292..266708 | Clytia hemisphaerica | exon |
| TCONS_00059102-exon-scaffold_316-1510915933:264292..266708 | TCONS_00059102-exon-scaffold_316-1510915933:264292..266708 | Clytia hemisphaerica | exon |
| TCONS_00059102-exon-scaffold_316-1575043694:264292..266708 | TCONS_00059102-exon-scaffold_316-1575043694:264292..266708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:264292..266708 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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