TCONS_00059103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059103
Unique NameTCONS_00059103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059103 ID=TCONS_00059103|Name=TCONS_00059103|organism=Clytia hemisphaerica|type=transcript|length=609bp
GCACAAGGAACTCCTATTCATATCTTAGAGTTTGTTGCAGTTGCCATGGC
TGTAATTACTTGGGTGGATAACCTGGTTAATAAGCAGGTCACTATTTCTA
CAGATAATTTAGACATTGTTCTCGTTTGGCGTTCAGGTTCCTGTAAAGAC
AAACTTATGATGAAACTAGTTCGAcacctttttcttttcattgcaAGGAT
AAACATCAATATTCTTTTGGTACACCTGCCAGGCAAAGATAATGATTTAC
TGACTTACTTTCTCGCTTGCAGGTTAGCCGGTTCTTGAGTCTAGCCGAGT
CCGCCAGTCCAGAACCTTCCAGGATCCCGGAAGAAGCATGGGAGATCTTA
GACTTGCTCGAGACCGTTTACTAGCTGAAGGTATCTCTCGAAACTCTTTG
TGCACATATCAATCAGGCTTCAATCgctttcaaagattttgcttcatGTA
TCGCTTTGTGTGGTTGCCGCCACAAGAATTACATTTGGAACTATTTGTCA
CTTCTCTTGTGAGACAAGGCCTACAGTACAATACAATGAAGGTATATCTC
TATGGAATTCAATTTTGCGCACTCCAACAAGGTGTCGAAGTTAGAATTGT
TTCCATGCG
Run BLAST on NCBI

transcript from alignment at scaffold_316:318042..318650

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059103 ID=TCONS_00059103|Name=TCONS_00059103|organism=Clytia hemisphaerica|type=transcript|length=609bp|location=Sequence derived from alignment at scaffold_316:318042..318650 (Clytia hemisphaerica)
CGCATGGAAACAATTCTAACTTCGACACCTTGTTGGAGTGCGCAAAATTG
AATTCCATAGAGATATACCTTCATTGTATTGTACTGTAGGCCTTGTCTCA
CAAGAGAAGTGACAAATAGTTCCAAATGTAATTCTTGTGGCGGCAACCAC
ACAAAGCGATACatgaagcaaaatctttgaaagcGATTGAAGCCTGATTG
ATATGTGCACAAAGAGTTTCGAGAGATACCTTCAGCTAGTAAACGGTCTC
GAGCAAGTCTAAGATCTCCCATGCTTCTTCCGGGATCCTGGAAGGTTCTG
GACTGGCGGACTCGGCTAGACTCAAGAACCGGCTAACCTGCAAGCGAGAA
AGTAAGTCAGTAAATCATTATCTTTGCCTGGCAGGTGTACCAAAAGAATA
TTGATGTTTATCCTtgcaatgaaaagaaaaaggtgTCGAACTAGTTTCAT
CATAAGTTTGTCTTTACAGGAACCTGAACGCCAAACGAGAACAATGTCTA
AATTATCTGTAGAAATAGTGACCTGCTTATTAACCAGGTTATCCACCCAA
GTAATTACAGCCATGGCAACTGCAACAAACTCTAAGATATGAATAGGAGT
TCCTTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037222XLOC_037222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059103-exon-scaffold_316-1491911889:318042..318650TCONS_00059103-exon-scaffold_316-1491911889:318042..318650Clytia hemisphaericaexon
TCONS_00059103-exon-scaffold_316-1510915933:318042..318650TCONS_00059103-exon-scaffold_316-1510915933:318042..318650Clytia hemisphaericaexon
TCONS_00059103-exon-scaffold_316-1575043694:318042..318650TCONS_00059103-exon-scaffold_316-1575043694:318042..318650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:318042..318650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.126586	0.207058	0	0	0.119802	0.14577	0.120813	0.243936	0.308987	0.996996	0.131273	0.0753077	0	0.099695	0.160464	0	0.275705	0.628573	0	0.5096	0	0	0.614091	0	0	0.735244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top