TCONS_00059110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059110
Unique NameTCONS_00059110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059110 ID=TCONS_00059110|Name=TCONS_00059110|organism=Clytia hemisphaerica|type=transcript|length=529bp
ATCTAGAAAAATCGTTTGCCAGTTACCTGTTTCAAGATCTTGCTTCATTG
CTTCAAAATCAGCATTATCATAATTGTACCTTTCCGATGTGGGCTTTACA
TATGCATTGCACTTTATGCTAAAGGTCAGGGAACTGTGATCGCTTTTACC
CAATGGACTGAGATATTCCAGATTTTATGTTTGGTTGGCTTCTCCTGTTA
GAATGAGATCAACCAAAGATGGTTCATCGGTTCCACGGCCGTCCGTTCTG
ATGGAGGAAAGAGTCGCGGAGAGTATCTAAGAACTTCTCTTCTTTGCTTT
CTTCCTGATGTTTTGTCGTCCAATTTTCCCAGTTAATTGTAGGAAAGTTG
AAATCCCCTACAAAgcatttttgggaatattttttgatgGATGAAATATC
GTAAATGAGCTTATTAAGTctgatgttgtttttattcGACATGTTACTGC
TGGTAGGGCTGCGGTACATGCATgcaaaaaccagtaagtcattaCCACTT
AGGCGAACTTCTATGATACAAGCTTCAAN
Run BLAST on NCBI

protein sequence of TCONS_00059110-protein

>TCONS_00059110-protein ID=TCONS_00059110-protein|Name=TCONS_00059110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
XEACIIEVRLSGNDLLVFACMYRSPTSSNMSNKNNIRLNKLIYDISSIKK
YSQKCFVGDFNFPTINWENWTTKHQEESKEEKFLDTLRDSFLHQNGRPWN
R
Run BLAST on NCBI

transcript from alignment at scaffold_317:32682..33210

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059110 ID=TCONS_00059110|Name=TCONS_00059110|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at scaffold_317:32682..33210 (Clytia hemisphaerica)
NTTGAAGCTTGTATCATAGAAGTTCGCCTAAGTGGtaatgacttactggt
ttttgcATGCATGTACCGCAGCCCTACCAGCAGTAACATGTCgaataaaa
acaacatcagACTTAATAAGCTCATTTACGATATTTCATCcatcaaaaaa
tattcccaaaaatgcTTTGTAGGGGATTTCAACTTTCCTACAATTAACTG
GGAAAATTGGACGACAAAACATCAGGAAGAAAGCAAAGAAGAGAAGTTCT
TAGATACTCTCCGCGACTCTTTCCTCCATCAGAACGGACGGCCGTGGAAC
CGATGAACCATCTTTGGTTGATCTCATTCTAACAGGAGAAGCCAACCAAA
CATAAAATCTGGAATATCTCAGTCCATTGGGTAAAAGCGATCACAGTTCC
CTGACCTTTAGCATAAAGTGCAATGCATATGTAAAGCCCACATCGGAAAG
GTACAATTATGATAATGCTGATTTTGAAGCAATGAAGCAAGATCTTGAAA
CAGGTAACTGGCAAACGATTTTTCTAGAT

Coding sequence (CDS) from alignment at scaffold_317:32682..33210

>TCONS_00059110 ID=TCONS_00059110|Name=TCONS_00059110|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_317:32682..33210 (Clytia hemisphaerica)
NTTGAAGCTTGTATCATAGAAGTTCGCCTAAGTGGtaatgacttactggt
ttttgcATGCATGTACCGCAGCCCTACCAGCAGTAACATGTCgaataaaa
acaacatcagACTTAATAAGCTCATTTACGATATTTCATCcatcaaaaaa
tattcccaaaaatgcTTTGTAGGGGATTTCAACTTTCCTACAATTAACTG
GGAAAATTGGACGACAAAACATCAGGAAGAAAGCAAAGAAGAGAAGTTCT
TAGATACTCTCCGCGACTCTTTCCTCCATCAGAACGGACGGCCGTGGAAC
CGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037229XLOC_037229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059110-exon-scaffold_317-1491911889:32682..33210TCONS_00059110-exon-scaffold_317-1491911889:32682..33210Clytia hemisphaericaexon
TCONS_00059110-exon-scaffold_317-1510915933:32682..33210TCONS_00059110-exon-scaffold_317-1510915933:32682..33210Clytia hemisphaericaexon
TCONS_00059110-exon-scaffold_317-1575043694:32682..33210TCONS_00059110-exon-scaffold_317-1575043694:32682..33210Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059110-proteinTCONS_00059110-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_317supercontigscaffold_317:32682..33210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.64989	6.48682	10.168	9.21089	1.94365	2.24478	2.13807	2.13508	1.58825	1.50441	2.24648	2.3628	2.50698	2.29723	3.08477	4.93187	2.41362	2.47388	2.94638	1.47992	2.14387	1.72541	1.01695	1.84911	1.30937	2.97458	3.80055	1.78466	1.23055	0.501493
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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