TCONS_00059154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059154
Unique NameTCONS_00059154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059154 ID=TCONS_00059154|Name=TCONS_00059154|organism=Clytia hemisphaerica|type=transcript|length=607bp
AAAAAGTTGCATTCCAACTCAGAGATTGAGGAAATATATTTGACGAAATA
TCTTATTTCTAATTTTAAAGCGAAGCAACAGAGTAAGATACCGCCAATAa
ccacaaaataaatttcaagtatatgtaaaagaatttaaagttagataaaa
caaaagaacgtaTGCTAtgtataaaaaacgtgtaaaaaattatttaggtA
ATAAAAGTTGATCGCTTTCACAGGCTGATGGTTCGATCACTTCCTTCAGT
GAAGGCTCGTTAATATTCAAAGAGAGAGAATGATCTGTTACCATGGTGCT
TTGGGTGGCGCCACCCGTTGTATTTGAGCGGTAGGTGCCGCTCGTTAAGA
GTTCATTACCGCGATTATTGAAATCGAAACAAACAGTCTGTGGTTCTTTG
ATCAATGATTTACTGTTGGGATGGCATGCAACCTTACTCAGTAAtgtgtt
caaatttttcttcacaCGTTGGCTTTTCAAGCGAGCGGAGGGGAGGCCAT
ACCAACATTCCACCATCACCTTCACGTATCTCGATAACACCTGAATTCAA
TTAAGTAGTATTAAGTTTGgattaaaaatttaaatcctgaaccATCTTAC
CCTATTG
Run BLAST on NCBI

protein sequence of TCONS_00059154-protein

>TCONS_00059154-protein ID=TCONS_00059154-protein|Name=TCONS_00059154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MVECWYGLPSARLKSQRVKKNLNTLLSKVACHPNSKSLIKEPQTVCFDFN
NRGNELLTSGTYRSNTTGGATQSTMVTDHSLSLNINEPSLKEVIEPSACE
SDQLLLPK
Run BLAST on NCBI

transcript from alignment at scaffold_318:215751..216357

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059154 ID=TCONS_00059154|Name=TCONS_00059154|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at scaffold_318:215751..216357 (Clytia hemisphaerica)
CAATAGGGTAAGATggttcaggatttaaatttttaatcCAAACTTAATAC
TACTTAATTGAATTCAGGTGTTATCGAGATACGTGAAGGTGATGGTGGAA
TGTTGGTATGGCCTCCCCTCCGCTCGCTTGAAAAGCCAACGtgtgaagaa
aaatttgaacacaTTACTGAGTAAGGTTGCATGCCATCCCAACAGTAAAT
CATTGATCAAAGAACCACAGACTGTTTGTTTCGATTTCAATAATCGCGGT
AATGAACTCTTAACGAGCGGCACCTACCGCTCAAATACAACGGGTGGCGC
CACCCAAAGCACCATGGTAACAGATCATTCTCTCTCTTTGAATATTAACG
AGCCTTCACTGAAGGAAGTGATCGAACCATCAGCCTGTGAAAGCGATCAA
CTTTTATTacctaaataattttttacacgttttttatacaTAGCAtacgt
tcttttgttttatctaactttaaattcttttacatatacttgaaatttat
tttgtggtTATTGGCGGTATCTTACTCTGTTGCTTCGCTTTAAAATTAGA
AATAAGATATTTCGTCAAATATATTTCCTCAATCTCTGAGTTGGAATGCA
ACTTTTT

Coding sequence (CDS) from alignment at scaffold_318:215751..216357

>TCONS_00059154 ID=TCONS_00059154|Name=TCONS_00059154|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_318:215751..216357 (Clytia hemisphaerica)
ATGGTGGAATGTTGGTATGGCCTCCCCTCCGCTCGCTTGAAAAGCCAACG
tgtgaagaaaaatttgaacacaTTACTGAGTAAGGTTGCATGCCATCCCA
ACAGTAAATCATTGATCAAAGAACCACAGACTGTTTGTTTCGATTTCAAT
AATCGCGGTAATGAACTCTTAACGAGCGGCACCTACCGCTCAAATACAAC
GGGTGGCGCCACCCAAAGCACCATGGTAACAGATCATTCTCTCTCTTTGA
ATATTAACGAGCCTTCACTGAAGGAAGTGATCGAACCATCAGCCTGTGAA
AGCGATCAACTTTTATTacctaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037252XLOC_037252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059154-proteinTCONS_00059154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059154-exon-scaffold_318-1491911889:215751..216357TCONS_00059154-exon-scaffold_318-1491911889:215751..216357Clytia hemisphaericaexon
TCONS_00059154-exon-scaffold_318-1510915933:215751..216357TCONS_00059154-exon-scaffold_318-1510915933:215751..216357Clytia hemisphaericaexon
TCONS_00059154-exon-scaffold_318-1575043694:215751..216357TCONS_00059154-exon-scaffold_318-1575043694:215751..216357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:215751..216357 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.18576	3.94203	8.22225	5.71981	21.2482	19.1433	20.3704	20.044	8.25518	15.7254	14.2589	11.2231	21.8185	21.6832	20.4532	28.352	26.5429	25.8787	20.3281	17.544	23.5415	21.3195	23.7275	22.2505	30.2388	31.9102	72.6787	53.7221	69.9066	66.8033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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