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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059174 ID=TCONS_00059174|Name=TCONS_00059174|organism=Clytia hemisphaerica|type=transcript|length=2386bp
AGCAATCTTCACCACAGTTTGTCACCATATGGAAGATAAGGAGGAAAAAT
ATCAACCACCAATTTACCAAGAAATCATGGATGTCGATCGCTCTGAAAAT
gaaatcaagaaagaaaaacaattcaaaCAATTACAAGAAGAATCAGGTCT
CAGTTTAACAACATCTATATTTTTCGTTGTTGGAGATGTTGTTGGAGCAG
GTGTCGTTGCATTACCTTATTCTATGAAACTGGTCGGCTACCTTGGGATT
CCTATGTTCATGATGTGTTCCTTACTCATGTGTTATTGTGCTATCCTTCT
AGCAAAAGCATGTGCTACAGTGATGCGAGATATTGATCGAAGAAGCCTAA
GAGACCCATATCCACGTGTTGGCTTAGAAGCGACCGGAAAATTCGGACGT
TACGTCACCATATTCGCTTTGTTTGTGAACCAAGTGTTAACGTGTATTGT
TTTTGTGCTTTTAGCGGGTGAAATTCTGTTAGAGTTAATCCCGTCAACAC
CATGGGATCATTATTCATACCGTATGCAGTTACGAATTTGGTTCATGATT
TGTGGCATGGTTTTACTTCCGTTTACTTTTCTCGGCTCACCCAAAGATTT
TGCTGGGATTGGCTTCATGGCTATGGCGACAAGTGGAGTGGCGATCGCCC
TTGTCATCGTCATGCTAGCTTACGTTTCTGGGTATACAGTAGACAATGAA
AAGACAATGCCGAAAACAATGGATGGTTTTCTACACGCTTTTGGGACAGT
CTTGTTCGGTTTTGGCGGTGTCTCTATTTTCCCCACCATTCAAGCAGACA
TGAAAAAACCCGACCAATTTGTGACGTCCGTCACTGTCGGCTATATTATC
ATTTCAATATTCTACGTTGTTACGCCTCTTACGGCGTATATAATCCTTGG
TGATTTGATACGTGAAGATTTGTTAACGACTTTTTCATACTTAGAACTCT
ATTTTACCAATCATCTTTTCCGGACGTTTTGTATGGCAGCACAAGCATGT
ATTTGCGGACACGTATTATgtgcttttgttttgaatataaatCCAGTTTA
CCAACAGTTCGAAGCATTGGTTGGAATTCCGACAGATTTTTGTTGGCAAC
GAGTGATCAGTCGAactttttggatgtttttcatTCTCTTTACTGCGGTT
GTAATTCCAGCATTCGGACCCGTCCTGTCGTTCGTCGGTGGCTCATTTGC
AGCATTACTCGGCGTTATCCTTCCAGTTGTTTTTTACGCTCGACTGTCAG
GTAATTTACCTTTATGGAAGGAGATTCTATTTGTTGCGATCATACTGGTT
GCTTTGTTTGGATCAGTTGGTAATGGATATGTAGAGATTAAGAATATCAT
CAAAGTTATTGGAAACAAATACAATCACCACGGTTGATTATAAGTATTTT
GTGCTTGGAAAGTGCTGACACATACGCCCAAAGAATATTTGAAATTACCG
accatcatttttttaaatgaaatatcAAGCATAAAACAAGCAAAGGGCTG
TTCAAGTCAAATTGTACTTTGTAGCGTAAACGAGAGATAATTTCACGTCG
GTTCAGCCAAGATTATAGAACTGACAATAGTGACAAATAACAAGTAAAAT
CTTTATAAACCTCCATCATTTCTAAGAGACTGCTCTATTTTTTTTACAGg
ttaaagctcaaaaaataaaattaaaatcgtTCCTATACAGCTGCGTTGAT
ACTAGACTATGTAAATCAATCAGTAGATTAATGGTTTGAGAAACCTAAAA
GGTTTTGCATAAATTTGGGTAACTTAACCAAAACTTGTTTTAATTTACTC
TATTAGTTGTCTGTCTGGTGGCCAACGGAGCCTGTGGGATGGCCTGCGAT
CGAATGGCCTAAAGTCACCTTATTTGTTTTCTCATCCGCGCATTGCGGAT
CATCCAAGACGGGGGGTTCGGATATCATCGGTTAGGttcagggttggagc
tcgagagtcacaataaaGGACCGAAGGTCCTCATAGGGGCACCCGTACCC
AGTGGCTTAACTTTTTCTGCACTAAAAGAGTCCAATTTTCAGACCCCAAT
TTTTGTCTGCACAAACGGTAGTTTGAGATTGagtgccccctcccccgggA
AATAGAGTCatatttgaaaacaaagaatgTTTCgaagaaagtttattttt
ctcaagatttGGAGGTTTCACTACTTAACTCCTTGATTTTCCGCTTGTGG
AAATAATACCcgtgggaattgaaaaaaaaaacaatctgtaattatgtaaa
tttagctattgttttattatttctcagtataaaaatttataagtatttgt
aaaaatgtgttttcaaattatataaaactatTCTCCTATCTAGGTATATA
TTATGGTATAAAATCTGGATTTTAACAATAAATAag Run BLAST on NCBI protein sequence of TCONS_00059174-protein >TCONS_00059174-protein ID=TCONS_00059174-protein|Name=TCONS_00059174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
AIFTTVCHHMEDKEEKYQPPIYQEIMDVDRSENEIKKEKQFKQLQEESGL
SLTTSIFFVVGDVVGAGVVALPYSMKLVGYLGIPMFMMCSLLMCYCAILL
AKACATVMRDIDRRSLRDPYPRVGLEATGKFGRYVTIFALFVNQVLTCIV
FVLLAGEILLELIPSTPWDHYSYRMQLRIWFMICGMVLLPFTFLGSPKDF
AGIGFMAMATSGVAIALVIVMLAYVSGYTVDNEKTMPKTMDGFLHAFGTV
LFGFGGVSIFPTIQADMKKPDQFVTSVTVGYIIISIFYVVTPLTAYIILG
DLIREDLLTTFSYLELYFTNHLFRTFCMAAQACICGHVLCAFVLNINPVY
QQFEALVGIPTDFCWQRVISRTFWMFFILFTAVVIPAFGPVLSFVGGSFA
ALLGVILPVVFYARLSGNLPLWKEILFVAIILVALFGSVGNGYVEIKNII
KVIGNKYNHHG Run BLAST on NCBI transcript from alignment at scaffold_319:332118..335345+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059174 ID=TCONS_00059174|Name=TCONS_00059174|organism=Clytia hemisphaerica|type=transcript|length=3228bp|location=Sequence derived from alignment at scaffold_319:332118..335345+ (Clytia hemisphaerica)
AGCAATCTTCACCACAGTTTGTCACCATATGGAAGATAAGGAGGAAAAAT
ATCAACCACCAATTTACCAAGAAATCATGGATGTCGATCGCTCTGAAAAT
gaaatcaagaaagaaaaacaattcaaaCAATTACAAGAAGAATCAGGTCT
CAGTTTAACAACATCTATATTTTTCGTTGTTGGAGATGTTGTTGGAGCAG
GTGTCGTTGCATTACCTTATTCTATGAAACTGGTCGGCTACCTTGGGATT
CCTATGTTCATGATGTGTTCCTTACTCATGTGTTATTGTGCTATCCTTCT
AGCAAAAGCATGTGCTACAGTGATGCGAGATATTGATCGAAGAAGCCTAA
GAGACCCATATCCACGTGTTGGCTTAGAAGCGACCGGAAAATTCGGACGT
TACGTCACCATATTCGCTTTGTTTGTGAACCAAGTGTTAACGTGTATTGT
TTTTGTGCTTTTAGCGGGTGAAATTCTGTTAGAGTTAATCCCGTCAACAC
CATGGGATCATTATTCATACCGTATGCAGTTACGAATTTGGTTCATGATT
TGTGGCATGGTTTTACTTCCGTTTACTTTTCTCGGCTCACCCAAAGATTT
TGCTGGGATTGGCTTCATGGCTATGGCGACAAGTGGAGTGGCGATCGCCC
TTGTCATCGTCATGCTAGCTTACGTTTCTGGGTATACAGTAGACAATGAA
AAGACAATGCCGAAAACAATGGATGGTTTTCTACACGCTTTTGGGACAGT
CTTGTTCGGTTTTGGCGGTGTCTCTATTTTCCCCACCATTCAAGCAGACA
TGAAAAAACCCGACCAATTTGTGACGTCCGTCACTGTCGGCTATATTATC
ATTTCAATATTCTACGTTGTTACGCCTCTTACGGCGTATATAATCCTTGG
TGATTTGATACGTGAAGATTTGTTAACGACTTTTTCATACTTAGAACTCT
ATTTTACCAATCATCTTTTCCGGACGTTTTGTATGGCAGCACAAGCATGT
ATTTGCGGACACGTATTATgtgcttttgttttgaatataaatCCAGTTTA
CCAACAGTTCGAAGCATTGGTTGGAATTCCGACAGGTACAGAGCGATACA
TATTTTCATTATATTTCTCCGATTTAGCACCCCTGTCTCGaagccccggt
ggagcttctTCCCTCAGTAGGGATTAAAtcccagtggggatagaaattct
attccCAGATCGAAAAATCAAATGGGGGTGGTTTcgaagtgcaatttttt
tccattaaatttcaaatggggatgaagacaaagtcaattttccagtgggg
ctgaaattgtggGGTATTTTTCGCAATGGGGGACGAAATTTTAGCCAGGA
ATGTATACATACCAATACCAACTAGCATTTCAAAGAAGAAAAGCACCCCT
GCCACAGCCACTAGTGtcactctttcacttcaccacATTCTCATACAGAC
CCACTAGAAGccctttccactggaaaattgatgTTGTCCCCGGTAGAAAA
TTAGTTGGATTACTTTTAAGTAAAAAAGTAATTGTTGCAGGCTGGATAGT
TGTGGAGGGAAATTTTCAATCGAGTAGAAGAATGAAGGTTTTTAAAACTC
TACTGAACCCTACCAAATTCTCTGCCTAAGTTTtggacgatcctatcgtc
tgcacatgaacattttttttccggccgaaaatgccgaaaatatgccttaa
aaaccggttttttgacattttctcgaattttcatccttagttttttctga
ttttttgcagaaagatgcatATTCGCAATTCGACGATCCTATTGTCtgca
caagatcactaaaaaaggaaaTAGTTCAGGAGATAAATTAAAAAACGGTG
GTTAGCGCGGGGTGGAGTTTACTTAAGTTTTGGCCGAAGACTATACtgaa
taaaatctttttatcttttcattTCAGATTTTTGTTGGCAACGAGTGATC
AGTCGAactttttggatgtttttcatTCTCTTTACTGCGGTTGTAATTCC
AGCATTCGGACCCGTCCTGTCGTTCGTCGGTGGCTCATTTGCAGCATTAC
TCGGCGTTATCCTTCCAGTTGTTTTTTACGCTCGACTGTCAGGTAATTTA
CCTTTATGGAAGGAGATTCTATTTGTTGCGATCATACTGGTTGCTTTGTT
TGGATCAGTTGGTAATGGATATGTAGAGATTAAGAATATCATCAAAGTTA
TTGGAAACAAATACAATCACCACGGTTGATTATAAGTATTTTGTGCTTGG
AAAGTGCTGACACATACGCCCAAAGAATATTTGAAATTACCGaccatcat
ttttttaaatgaaatatcAAGCATAAAACAAGCAAAGGGCTGTTCAAGTC
AAATTGTACTTTGTAGCGTAAACGAGAGATAATTTCACGTCGGTTCAGCC
AAGATTATAGAACTGACAATAGTGACAAATAACAAGTAAAATCTTTATAA
ACCTCCATCATTTCTAAGAGACTGCTCTATTTTTTTTACAGgttaaagct
caaaaaataaaattaaaatcgtTCCTATACAGCTGCGTTGATACTAGACT
ATGTAAATCAATCAGTAGATTAATGGTTTGAGAAACCTAAAAGGTTTTGC
ATAAATTTGGGTAACTTAACCAAAACTTGTTTTAATTTACTCTATTAGTT
GTCTGTCTGGTGGCCAACGGAGCCTGTGGGATGGCCTGCGATCGAATGGC
CTAAAGTCACCTTATTTGTTTTCTCATCCGCGCATTGCGGATCATCCAAG
ACGGGGGGTTCGGATATCATCGGTTAGGttcagggttggagctcgagagt
cacaataaaGGACCGAAGGTCCTCATAGGGGCACCCGTACCCAGTGGCTT
AACTTTTTCTGCACTAAAAGAGTCCAATTTTCAGACCCCAATTTTTGTCT
GCACAAACGGTAGTTTGAGATTGagtgccccctcccccgggAAATAGAGT
CatatttgaaaacaaagaatgTTTCgaagaaagtttatttttctcaagat
ttGGAGGTTTCACTACTTAACTCCTTGATTTTCCGCTTGTGGAAATAATA
CCcgtgggaattgaaaaaaaaaacaatctgtaattatgtaaatttagcta
ttgttttattatttctcagtataaaaatttataagtatttgtaaaaatgt
gttttcaaattatataaaactatTCTCCTATCTAGGTATATATTATGGTA
TAAAATCTGGATTTTAACAATAAATAag Coding sequence (CDS) from alignment at scaffold_319:332118..335345+ >TCONS_00059174 ID=TCONS_00059174|Name=TCONS_00059174|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_319:332118..335345+ (Clytia hemisphaerica)
GCAATCTTCACCACAGTTTGTCACCATATGGAAGATAAGGAGGAAAAATA
TCAACCACCAATTTACCAAGAAATCATGGATGTCGATCGCTCTGAAAATg
aaatcaagaaagaaaaacaattcaaaCAATTACAAGAAGAATCAGGTCTC
AGTTTAACAACATCTATATTTTTCGTTGTTGGAGATGTTGTTGGAGCAGG
TGTCGTTGCATTACCTTATTCTATGAAACTGGTCGGCTACCTTGGGATTC
CTATGTTCATGATGTGTTCCTTACTCATGTGTTATTGTGCTATCCTTCTA
GCAAAAGCATGTGCTACAGTGATGCGAGATATTGATCGAAGAAGCCTAAG
AGACCCATATCCACGTGTTGGCTTAGAAGCGACCGGAAAATTCGGACGTT
ACGTCACCATATTCGCTTTGTTTGTGAACCAAGTGTTAACGTGTATTGTT
TTTGTGCTTTTAGCGGGTGAAATTCTGTTAGAGTTAATCCCGTCAACACC
ATGGGATCATTATTCATACCGTATGCAGTTACGAATTTGGTTCATGATTT
GTGGCATGGTTTTACTTCCGTTTACTTTTCTCGGCTCACCCAAAGATTTT
GCTGGGATTGGCTTCATGGCTATGGCGACAAGTGGAGTGGCGATCGCCCT
TGTCATCGTCATGCTAGCTTACGTTTCTGGGTATACAGTAGACAATGAAA
AGACAATGCCGAAAACAATGGATGGTTTTCTACACGCTTTTGGGACAGTC
TTGTTCGGTTTTGGCGGTGTCTCTATTTTCCCCACCATTCAAGCAGACAT
GAAAAAACCCGACCAATTTGTGACGTCCGTCACTGTCGGCTATATTATCA
TTTCAATATTCTACGTTGTTACGCCTCTTACGGCGTATATAATCCTTGGT
GATTTGATACGTGAAGATTTGTTAACGACTTTTTCATACTTAGAACTCTA
TTTTACCAATCATCTTTTCCGGACGTTTTGTATGGCAGCACAAGCATGTA
TTTGCGGACACGTATTATgtgcttttgttttgaatataaatCCAGTTTAC
CAACAGTTCGAAGCATTGGTTGGAATTCCGACAGATTTTTGTTGGCAACG
AGTGATCAGTCGAactttttggatgtttttcatTCTCTTTACTGCGGTTG
TAATTCCAGCATTCGGACCCGTCCTGTCGTTCGTCGGTGGCTCATTTGCA
GCATTACTCGGCGTTATCCTTCCAGTTGTTTTTTACGCTCGACTGTCAGG
TAATTTACCTTTATGGAAGGAGATTCTATTTGTTGCGATCATACTGGTTG
CTTTGTTTGGATCAGTTGGTAATGGATATGTAGAGATTAAGAATATCATC
AAAGTTATTGGAAACAAATACAATCACCACGGTTGAGCAATCTTCACCAC
AGTTTGTCACCATATGGAAGATAAGGAGGAAAAATATCAACCACCAATTT
ACCAAGAAATCATGGATGTCGATCGCTCTGAAAATgaaatcaagaaagaa
aaacaattcaaaCAATTACAAGAAGAATCAGGTCTCAGTTTAACAACATC
TATATTTTTCGTTGTTGGAGATGTTGTTGGAGCAGGTGTCGTTGCATTAC
CTTATTCTATGAAACTGGTCGGCTACCTTGGGATTCCTATGTTCATGATG
TGTTCCTTACTCATGTGTTATTGTGCTATCCTTCTAGCAAAAGCATGTGC
TACAGTGATGCGAGATATTGATCGAAGAAGCCTAAGAGACCCATATCCAC
GTGTTGGCTTAGAAGCGACCGGAAAATTCGGACGTTACGTCACCATATTC
GCTTTGTTTGTGAACCAAGTGTTAACGTGTATTGTTTTTGTGCTTTTAGC
GGGTGAAATTCTGTTAGAGTTAATCCCGTCAACACCATGGGATCATTATT
CATACCGTATGCAGTTACGAATTTGGTTCATGATTTGTGGCATGGTTTTA
CTTCCGTTTACTTTTCTCGGCTCACCCAAAGATTTTGCTGGGATTGGCTT
CATGGCTATGGCGACAAGTGGAGTGGCGATCGCCCTTGTCATCGTCATGC
TAGCTTACGTTTCTGGGTATACAGTAGACAATGAAAAGACAATGCCGAAA
ACAATGGATGGTTTTCTACACGCTTTTGGGACAGTCTTGTTCGGTTTTGG
CGGTGTCTCTATTTTCCCCACCATTCAAGCAGACATGAAAAAACCCGACC
AATTTGTGACGTCCGTCACTGTCGGCTATATTATCATTTCAATATTCTAC
GTTGTTACGCCTCTTACGGCGTATATAATCCTTGGTGATTTGATACGTGA
AGATTTGTTAACGACTTTTTCATACTTAGAACTCTATTTTACCAATCATC
TTTTCCGGACGTTTTGTATGGCAGCACAAGCATGTATTTGCGGACACGTA
TTATgtgcttttgttttgaatataaatCCAGTTTACCAACAGTTCGAAGC
ATTGGTTGGAATTCCGACAGATTTTTGTTGGCAACGAGTGATCAGTCGAa
ctttttggatgtttttcatTCTCTTTACTGCGGTTGTAATTCCAGCATTC
GGACCCGTCCTGTCGTTCGTCGGTGGCTCATTTGCAGCATTACTCGGCGT
TATCCTTCCAGTTGTTTTTTACGCTCGACTGTCAGGTAATTTACCTTTAT
GGAAGGAGATTCTATTTGTTGCGATCATACTGGTTGCTTTGTTTGGATCA
GTTGGTAATGGATATGTAGAGATTAAGAATATCATCAAAGTTATTGGAAA
CAAATACAATCACCACGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059174-exon-scaffold_319-1491911889:332118..333202 | TCONS_00059174-exon-scaffold_319-1491911889:332118..333202 | Clytia hemisphaerica | exon |
| TCONS_00059174-exon-scaffold_319-1510915933:332118..333202 | TCONS_00059174-exon-scaffold_319-1510915933:332118..333202 | Clytia hemisphaerica | exon |
| TCONS_00059174-exon-scaffold_319-1575043694:332118..333202 | TCONS_00059174-exon-scaffold_319-1575043694:332118..333202 | Clytia hemisphaerica | exon |
| TCONS_00059174-exon-scaffold_319-1491911889:334045..335345 | TCONS_00059174-exon-scaffold_319-1491911889:334045..335345 | Clytia hemisphaerica | exon |
| TCONS_00059174-exon-scaffold_319-1510915933:334045..335345 | TCONS_00059174-exon-scaffold_319-1510915933:334045..335345 | Clytia hemisphaerica | exon |
| TCONS_00059174-exon-scaffold_319-1575043694:334045..335345 | TCONS_00059174-exon-scaffold_319-1575043694:334045..335345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_319 | supercontig | scaffold_319:332118..335345 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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