TCONS_00059179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059179
Unique NameTCONS_00059179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length990

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059179 ID=TCONS_00059179|Name=TCONS_00059179|organism=Clytia hemisphaerica|type=transcript|length=990bp
TGACTGAATGTGGATTTGGAGCTGACATTGGGATGgagaaatttttcaac
atcAAATGCAGATACAGCGgACTTCTACCATCATGTGTGGTACTTGTAGC
GACAGTTCGTGCTCTCAAGATGCATGGCGGTGGTCCTAAAGTTGTTGCTG
GTTCACCGTTACCTGAAGCTTATACAACCGAGAACATCGAACTTGTGGAG
AAAGGCTTCTGTAACTTACGTAAACAAATCGAAAATGCGCTCTGCTTTGG
TGTACCTGTTGTAGTTGCAGTCAATAAATTCCATACTGACACAGATGGTG
AGATTAACAAAATGATCAGCCTTTCCAAAGAAGCAGGAGCTTTTGATGCT
GTCCTTTGTACTCATTATGCTGAAGGAGGTCAAGGTGCTGTTAATTTGTC
CCAAGCAGTTATTAAAGCGTCCGAAGAAAAAACGAATTTCCGATTTCTGT
ACGATTTGAAGcTTCCTTTGGAAGagaaaattgaaatcattgccaAGAGA
ATTTATGGTGCAGATGGCGTCTCATTCTCTGATCAAGCAAAAGAAAGTTT
GGCGCGCTATACTAAACAAgGTTTCAGTGAACTACCGATCTGTATGGCAA
AGACGCATTTGTCATTGTCTGATAACCCTGAACTGAAAGGCGCTCCCACA
GgCTTTACTCTCCCTATTCGTGACGTCAGAGCAAGTGTTGGTGCAGGCTT
CGTCTTTCCACTGGTGGGAACTatgaGTACGATGCCAGGTTTACCAACAC
GTCCATGTTTTTATGACATCGACCTCGATCCCGATACCGAAGAAGTTCAA
GGTCTCATGTAAAAAATGACACCGAACTAGACTGACTGAAACTGCtgaac
atttttttcaagattttattattgtagattttcatttttgtatcactttt
ttttttaatacataGAAATTTAGTAGTATTTTATATATCTTTCACCTTAA
ATGATTTacacacttttttcaaataaaattcataTTCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_319:14171..18784-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059179 ID=TCONS_00059179|Name=TCONS_00059179|organism=Clytia hemisphaerica|type=transcript|length=4614bp|location=Sequence derived from alignment at scaffold_319:14171..18784- (Clytia hemisphaerica)
TGACTGAATGTGGATTTGGAGCTGACATTGGGATGGAGAAATTTTTCAAC ATCAAATGCAGATACAGCGGTTTGTATTTAGAATGTCTTTCGAGTTTCAT GCTTTATTGGGAGAAAGGATTTTCTTTATTTCCAAGATACAAGCTGAGTT ACTGCAAGTGTGGTTTTTATTACCTCCTTTTCATTTTTCTAGAGAAAACA TAAGTTTCTTAAAAAGCTCAGTTTTCCTAGAGTCTGTCAATACTGCTTTA TGAACTTATAGTTGATACGAGACACGAAAAACGATGAAATATAACTATTT AAGAAAGCTTGATATATTCTTGATGTACTTTTTTTCTTTATCAGGACTTC TACCATCATGTGTGGTACTTGTAGCGACAGTTCGTGCTCTCAAGATGCAT GGCGGTGGTCCTAAAGTGAGACGAACTTTATTTTAGCCCTTAAAACAAGC GTTCGAAAAAACTTTTTCATCTGAAAATTCGAAATAAAGTTTCTCCTTTG TGATTAAAGTAGAGATAGCGTTAAATGTCTTAACTATGAACCCCTGAAAA TTTGGAGGATTACCAAATATACTAATGATCTCAGTAACCAATACACTTTT CAACAAACATGATCCTCAAACCAATTATTCTATAGGTTGTTGCTGGTTCA CCGTTACCTGAAGCTTATACAACCGAGGTAAGTCCCAGTTATGAAAATAT TCCAGACATAAAATTTTGTCTGTGCCGTCAGTAAACATTTATTTCTTTTG TATAAAAAGAAAATTTGATGAAAGGGGTTGTATTCCATGTTCTTCAATTT CTTTGCATTGAAGCATGAGAATAAGAGTGTTATTAAAATCTCTACCAATA TTACTCCTTGCATTTGATTTCTTATTATAAAGTCTTTAAAAAAATCAAAA TCTCAGCTTCAAAATCAGTTCTACTGATCATGTTTTTTCTCTTTCGTATT TTTAGAACATCGAACTTGTGGAGAAAGGCTTCTGTAACTTACGTAAACAA ATCGAAAATGCGCTCTGCTTTGGTGTACCTGTTGTAGTTGCAGTCAATAA ATTCCAGTATGTTGGTCTAAAAAATGGAATATATCTAGCATTGTTTCTCT TTTCATTGTTATCAAATGAAGTTCTGTTTTTTATTGTGTCAGAGCTTGTA ATCTACTAAACTTTGTTTAATAGTCCTGCCAGTTGGTTCACTCGGTAGAG CATTGGCAATCCAAGGGTTGTGGATTCGATCCCCTGTCAGCGCCAACTCA GCGAAGTAGTAGCTTAGATTGGGTAGTCTATCTGGGGTATAAGTAACTTG GAGCTGATAGTGGCGCTCCACTTCAGGATTCCATTTCCCAGTACAAGTGC AAATAGAAAAGGGAGTGGACTACTGGTAGGTTATCTAGACGACCATGCTA TGTTTTATATACTAGGTATATAAAGTGAAGGGAAGGAGAAGTAAAATAAT AAATAAGGTTATTTTCGTTTGAGTCTAACGAATTAGAAAATAACTTACCT TACTGAAGAGTAAGATTTATGTAAATCTTCAATTTTTCTCTTTCTTGATT TCAGTACTGACACAGATGGTGAGATTAACAAAATGATCAGCCTTTCCAAA GAAGCAGGAGCTTTTGATGCTGTCCTTTGTACTCATTATGCTGAAGGAGG TTCGTCTTCGTTTTTTCGTTCAGTAACAGTTTTTAAATGGTTATTAATTG AACCTATAGAACAAAATTATAACTCCAACACAAACAAGCATGTTTTTTTA ATTTTCATCCTCATCTCACTCACTCTTCATTTTTTTTCTACATTTTTTTG TGAATTTTTGTTTCCTATTCCTCCTTCGGCCATGTATCATTTTCGGGCGA TGAATGACATGTATTTTTCCTCTTCTTTTAATTAGTTTTTCATTTTCACG TTCTTTCCAAAACTTGAATTCTGTTCACTTTGATTATAGGTCAAGGTGCT GTTAATTTGTCCCAAGCAGTTATTAAAGCGTCCGAAGAAAAAACGAATTT CCGATTTCTGTACGATTTGAAGGTAACTCAATTAAAAATTCATTGATCTA CAATAAATACCGACAACGGCTTAGTCTATTTGAGTTCAATTGCGGAAATC TCAAACATTTATTTTGGTACAGCCTATAGCGGTCATTTTTTCTGTATTGA AAGATGTATTTTCCATATAAAAACCTAACTTTTTTTTCATAAATTTAGCT TCCTTTGGAAGAGAAAATTGAAATCATTGCCAAGAGAATTTATGGTGCAG ATGGCGTCTCATTCTCTGATCAAGCAAAAGAAAGTTTGGCGCGCTATACT AAACAAGTAAGTCTTGAATTACTCGATCTTTTATAAATTCAAATATATAA GAATATGAATTTTGGCTCAATCCCATATTCACGTTTATAAACGGCTAAGA AAATGCTCTCCTAAGCCAATTATTCAATAAAGTCAGCATATTAAGAACAT TTTTAAAGAATGTAGCCTGAATACCGCGTGAAAATTAAATCAGCCTAAAT TTTAAGGTAAACAACATTGTGAAATTGATTATTTTTTTCGAGCTTATGAA TGCCGTTCTTAGAGGACGATGATTTCTTACAGCTCCAGATTAATACTGTA AACATTTTTTTTTGTTTTGCAGGGTTTCAGTGAACTACCGATCTGTATGG CAAAGACGCATTTGTCATTGTCTGATAACCCTGAACTGAAAGGCGCTCCC ACAGGTAAGCTTGTCATGTCTTCAGTCGATCGATTAAATGTTAATTAGTT AATTGGTTCACGTCTATTTATGAAAATATTCAAACCAAAATAGGTTGGGA GTACTAATACTCTGATTGTAGGGGGGGGGTTAGCAGGGAAGTTGGTACTC TGGAAGAAAATCTATAAAATGAGGGGGGGGTCAATATAAAGTAATTTTTC CCAAAAACCCCAAGGAAAATGAAGGTTTTGGTACTTTTTCAGGAAAATTT CATAAATGGGGTGGGGGGTTAGTCATTATAAAACGGTATTGGGATGATTT TTTCCGAATAATTGCAAAGTGACCCCCCTACAATGAAGCACAGAAGAGTC CCACACTTATGGCGTCTTTTGCCTCCGTGACCTTGTTTTCATGACGATCT AAAAATATTTTTTCCAGGCTTTACTCTCCCTATTCGTGACGTCAGAGCAA GTGTTGGTGCAGGCTTCGTCTTTCCACTGGTGGGAACTGTAAGTCCCTTT TTTGCTTTTTCTCCGGAAAAATGCTACCCTGTTGACCCATCATGTCAATT CATATTTACCAATCATTGACTGGTCATGGCCAAGAAAATTAGAAATGTTT TCGGATTATTCGCCTATTGCATTATGGTGTTACAACATAACTAAAGCAAG CTTAGAGGTTTTTGCGTTTTTATTTCATTGTTGCATTATTGTCACACAAA ATATCTTTCTACTTATAGAAATGGTCTGACACAGTACTTTTTGATGATAT AACCTAAACAATGGATCTAGACTATTTCGACTGATTTTTTTTTATTAGAT GAGTACGATGCCAGGTTTACCAACACGTCCATGTTTTTATGACATCGACC TCGATCCCGATACCGAAGAAGTTCAAGGTCTCATGTAAAAAATGACACCG AACTAGACTGACTGAAACTGCTGAACATTTTTTTCAAGATTTTATTATTG TAGATTTTCATTTTTGTATCACTTTTTTTTTTAATACATAGAAATTTAGT AGTATTTTATATATCTTTCACCTTAAATGATTTACACACTTTTTTCAAAT AAAATTCATATTCTTGGATAAATCATTTTGAGTTCTTCATCGCCAAAACA TTCGCAGATAGTTACGTTTTTCTCAATGTCTTTTTCAGGTAATTTCTGAA AACTTTCAATTGTTCTTGCTCAATTTAAACATCAAGAAAATTTTCTTCGC TCAATAGTTATCGATTCTTTAATTTTTCCACTATCACAGCGTTTTCTTTT TAATTTCATTTCAATTTAGAAAATCTGGTAAAATTGATTGTAAATATTAA ATTGTTTTCTAGAAATATTGAAACATCGAACCTTACATCTGTTTTATACG GTGGCCCAAAAGGGTCAACGAATCTTTTTCGTAGCCATCATGTCAATTCA TATTTACCAATCATTGACTGGTCATGGCCAAGAAAATTAGAAATGTTTTC GGATTATTCGCCTATTGCATTATGGTGTTACAACATAACTAAAGCAAGCT TAGAGGTTTTTGCGTTTTTATTTCATTGTTGCATTATTGTCACACAAAAT ATCTTTCTACTTATAGAAATGGTCTGACACAGTACTTTTTGATGATATAA CCTAAACAATGGATCTAGACTATTTCGACTGATTTTTTTTTATTAGATGA GTACGATGCCAGGTTTACCAACACGTCCATGTTTTTATGACATCGACCTC GATCCCGATACCGAAGAAGTTCAAGGTCTCATGTAAAAAATGACACCGAA CTAGACTGACTGAAACTGCTGAACATTTTTTTCAAGATTTTATTATTGTA GATTTTCATTTTTGTATCACTTTTTTTTTTAATACATAGAAATTTAGTAG TATTTTATATATCTTTCACCTTAAATGATTTACACACTTTTTTCAAATAA AATTCATATTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037271XLOC_037271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059179-exon-scaffold_319-1575043694:18716..18784TCONS_00059179-exon-scaffold_319-1575043694:18716..18784Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:18370..18440TCONS_00059179-exon-scaffold_319-1575043694:18370..18440Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:18108..18149TCONS_00059179-exon-scaffold_319-1575043694:18108..18149Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:17729..17829TCONS_00059179-exon-scaffold_319-1575043694:17729..17829Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:17136..17230TCONS_00059179-exon-scaffold_319-1575043694:17136..17230Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:16763..16845TCONS_00059179-exon-scaffold_319-1575043694:16763..16845Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:16479..16586TCONS_00059179-exon-scaffold_319-1575043694:16479..16586Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:16081..16162TCONS_00059179-exon-scaffold_319-1575043694:16081..16162Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:15597..15667TCONS_00059179-exon-scaffold_319-1575043694:15597..15667Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1575043694:14171..14438TCONS_00059179-exon-scaffold_319-1575043694:14171..14438Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:18716..18784TCONS_00059179-exon-scaffold_319-1510915933:18716..18784Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:18370..18440TCONS_00059179-exon-scaffold_319-1510915933:18370..18440Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:18108..18149TCONS_00059179-exon-scaffold_319-1510915933:18108..18149Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:17729..17829TCONS_00059179-exon-scaffold_319-1510915933:17729..17829Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:17136..17230TCONS_00059179-exon-scaffold_319-1510915933:17136..17230Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:16763..16845TCONS_00059179-exon-scaffold_319-1510915933:16763..16845Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:16479..16586TCONS_00059179-exon-scaffold_319-1510915933:16479..16586Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:16081..16162TCONS_00059179-exon-scaffold_319-1510915933:16081..16162Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:15597..15667TCONS_00059179-exon-scaffold_319-1510915933:15597..15667Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1510915933:14171..14438TCONS_00059179-exon-scaffold_319-1510915933:14171..14438Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:18716..18784TCONS_00059179-exon-scaffold_319-1491911889:18716..18784Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:18370..18440TCONS_00059179-exon-scaffold_319-1491911889:18370..18440Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:18108..18149TCONS_00059179-exon-scaffold_319-1491911889:18108..18149Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:17729..17829TCONS_00059179-exon-scaffold_319-1491911889:17729..17829Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:17136..17230TCONS_00059179-exon-scaffold_319-1491911889:17136..17230Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:16763..16845TCONS_00059179-exon-scaffold_319-1491911889:16763..16845Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:16479..16586TCONS_00059179-exon-scaffold_319-1491911889:16479..16586Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:16081..16162TCONS_00059179-exon-scaffold_319-1491911889:16081..16162Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:15597..15667TCONS_00059179-exon-scaffold_319-1491911889:15597..15667Clytia hemisphaericaexon
TCONS_00059179-exon-scaffold_319-1491911889:14171..14438TCONS_00059179-exon-scaffold_319-1491911889:14171..14438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:14171..18784 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0.243944 tpm) - - (12.392 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96127 3.393 3.82845 3.36275 0.329596 0.608476 0.665861 2.261 5.74624 2.87967 3.73819 3.37958 10.4282 7.2356 9.54124 8.06463 12.392 2.61812 8.18185 7.66634 0.243944 4.48188 4.26244 0.869678 1.55312 0.785437 3.63876 0.931927 0.969945 0.743991
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700800900Expect = 2.62e-131 / Id = 72.39SequenceC1TC
Match NameE-valueIdentityDescription
C1TC2.620e-13172.39C-1-tetrahydrofolate synthase, cytoplasmic OS=Homo... [more]
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