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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059195 ID=TCONS_00059195|Name=TCONS_00059195|organism=Clytia hemisphaerica|type=transcript|length=1039bp
ATAGGAAACAAAATTCATACTTCgaagggtcggatacaggagCCAACTAA
CTAAAAACACataaattcaaaatggcagcAAGACCAAAGGGTTACGGATT
AACTGCTGAAGTCAGAGGAAAAATTGATGGCAAATATGATGGCGAATTAG
CACAACAAGCCATGCAATTCATTGAACATTACGTTCCTGACTCCAACGTT
TCTGGAAACAGTACATCAGATGCAGTTGCCGAAAAACTGAAAGACGGGGT
CGTTTTATGTAAACTCATCAATGCTATCGAACCTGGGTCCATTAAAAAAT
TCAACGAAtcaaaaatggcttttaaacAGATGGAAAACATCGGAAAGTTC
TTAGACGCTATCGACCAGTACGGTGTTGCGAAATCAGATAGTTTCCAAAC
AGTCGATCTTTATGAGAAACAAAACATGCCAGCTGTCATCAATGCTATCC
ACGCTTTAGGACGAAAAGCACAAGGTAAAGGGCGTTATGGCATCGGCCCA
AAAGAGTCGcaagccaacaaacgggaatTTANTCTAAAGGGTGTTATGGT
ATCGGCCCAAAAGAGTCGcaagccaacaaacgggaatTTACTGAAGAGCA
AATGCGTGCTGGTTCAAATGTTATCGGACTTCAAATGGGTTCCAATAAAG
GAGCGTCTCAGGCTGGTCAAAACTTTGGTAAAACTAGATCTATCATGGAT
TAAGTTGGTGATTTATTTGGCAATGAACAAGTTTATCTGTCACTTTTTGC
ATTTGTAACCATGCTGGACTTTTTTTCGAAGACTTTTTCAATTAATATTT
TCGAGATACGTTTTGAAGGGTATTATGGGTATTGAAATCAGTATACGAGC
ACTGGGTACGATTCTTATTGTTTAGTATTATACAGAGGTAGGAAAATCTA
TTTGATGTTTATTTTAGAATATTTAAAGACTATCAAAAACCCTGACGTGT
GATGAATTATTACCATGGTTTTCATGTCCCTAAGGGCTTCAATGGTTAAA
ATACCCAGagcaagttaaaaacattttaagactttgtgg Run BLAST on NCBI protein sequence of TCONS_00059195-protein >TCONS_00059195-protein ID=TCONS_00059195-protein|Name=TCONS_00059195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MAARPKGYGLTAEVRGKIDGKYDGELAQQAMQFIEHYVPDSNVSGNSTSD
AVAEKLKDGVVLCKLINAIEPGSIKKFNESKMAFKQMENIGKFLDAIDQY
GVAKSDSFQTVDLYEKQNMPAVINAIHALGRKAQGKGRYGIGPKESQANK
REFXLKGVMVSAQKSRKPTNGNLLKSKCVLVQMLSDFKWVPIKERLRLVK
TLVKLDLSWIKLVIYLAMNKFICHFLHL Run BLAST on NCBI transcript from alignment at scaffold_319:322315..325728- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059195 ID=TCONS_00059195|Name=TCONS_00059195|organism=Clytia hemisphaerica|type=transcript|length=3414bp|location=Sequence derived from alignment at scaffold_319:322315..325728- (Clytia hemisphaerica)
ATAGGAAACAAAATTCATACTTCGAAGGGTCGGATACAGGAGGTAGGCTA
TCTTATTCATGGAGAGTAATTAGTTTCCATATAAGGTAATACGATAATAA
AGTGCACTCTCCTCCATTGGTTATAGCCTCCCTCTGTATCCGAGCCTGCT
TCGAAAGAGCGATTTCAAGCGTGTCGGATAAATGTCCGACCGTTATTAAA
TCCCTGTGATGGGATGATGGGATAAGATCATCCAACGTACTATACCTAAA
AGAGAGTTCTCTGTAAACCATGGGTGGCTTGTTTGTTTCTTTCTATTTGG
CAGATCCTTAATAAAAATTGTTTTTTCAATACTTGTAAAACCTGCCAAAA
AATTTGTCAGAACAACATTTTGCTTGTCTATTTTGTTTATCTGTGGTTAT
CCTTCTCATTTGATTTCTTTTTTTTTGCGGGAGGTCCCCGGGGTCTGAAG
TAGCGAGCACCTCACTAATAACCGGGACTTTTCATCTCGTTTCTTGCGTA
AAAAAACGCGGGTGACGTCTAGTATAGGCTAGGTCTGAAGTTGCTGATCG
AAAACTCGCACCCTGTATCTCGCACGGGCTATCAATACACACCTCAGACC
TGAATATTACTTTATTGCCTGAAAACATATGTTAAACTTAAGGCTACTAA
GCAAGTATATCAGTTAAATTGTTGTTGACACTATATAAACGCAAACAAGA
GAAATTACGCTGCATTCTGTCAAAATTTCCACGAAACTTGGCAAGGTTAA
TGAAATTGAGACATATCAAACTTGATTGAATTTGATTGTTAATCAAGTAC
TATATGTCTCATTTCAATGACCTTGCATGGAAATTCTTCCGGTTTGAAGT
TTTTTCAAGGTCGACAGTGATTGGCTTGCTCGATATATAACTATTCGAAT
CAATCTTTCTATAAGCTTAAAACAATCAATCGAGATTTTTTAAGCGCATT
GGAAGTTATAGTTCAAAGGCAGTAAGTTTAAGGGAAGTTTAAGACTCATT
TTGTAACAGCTTTTAATTCATAGCGGATTATACCTTGATTTGAAATGACA
GTTACAGGATTATACTGGTTCGGAATTAGTTTTTTTTATAAGCATTCTTT
TAGTTGTACCAATCACAAGGCCTAAATTTTCAAAGTTTTAATTATTTTTT
AGAATCATGCTGATCCTCTACGATATTAATTGACAATGTAAATAAGGCTT
TAAGAAATTTCGAGATAATCGTTTTCTCCTTGGTCTTCTTTAAAATTTAA
AGATGACGTAGAATATTTTCCGAGAGATTGGAAGGTTTTCTCAAGAATGT
TTTCATCCTTGAGGATGAAAAATTTAAGAATCAAGAGTCTAGTTTCAATT
TATGTAATTCTTATAAAAAAACTATCTATTTCCCTCTCACACCTTAAGAA
GATACTTCATAGCTCTTAAACAAGGCTTTCTCGTTTGATGTAAGTTCGGA
GACAAGGTCATCAAATACTATGTTATGAAAAAGATTTGTTTCTTTGACAA
AAAAACGGTACATAATTTTGCAAAGGCGATTGAATTTTTGTGCTCTGACA
ATCAGGTATTCAATCTGAGATATTTTCAATGTCCATAAACTATAGTTGTA
AAACATCAATCTTCTAGATTGTTCAGATGAAATCGAGAACAAGTATCTCA
ATTGAAATTTCGAGTCAAGAAGTTCAGATTATGTATCGTACTGGAAAATA
GCAATTTTTTCCATGCTGGCGTTATCTCCTTGGTGTCATTTCCGCGCTAT
ATAAAGTTATTAACAAAATCTTTAATATATTATTACCGATAGCGTCGTTT
TATGCTCATCTCTTGGTACACGATTTTGGCCGATATGGTTTACCGTTGAA
CATGTTTTATGATTGTAATTTTGCTTTCTATTTTCTCGTTTCTCAGCCAA
CTAACTAAAAACACATAAATTCAAAATGGCAGCAAGACCAAAGGGTTACG
GATTAACTGCTGAAGTCAGAGGAAAAATTGATGGCAAATATGATGGCGAA
TTAGGTAAGTTGAATCTCATACTTCATACAATTTCGAAACGTGTTTTATT
TTAACTTCTTCCACTCAACTACCAGTCAGAGAATTCCCTCAATTGCGGTA
TACTGTAATCGCGGGAAGAAATAACTACCGCGATTGAGAGAATTCCTCGA
CTGACAACTGTTTTATCGGAGCACCACTAATAATAACCACCACTGCCAAA
TTTTATCAATGAGTAACCTGCTAAACTTTTCTCTTCAATAATTTGGAAAA
TAGTTTTTAACTCTTTACCGGATCAGGTATGATACCAATATTGCTCCTTT
AGCCATCTCTATCTGCTATTGAAGTTTGAAGATCTTCAAGTTTTAGGTCA
GTCTAGCTATATAGTTATTTTTGAAAGCACGAAATAGTTTTAACATCTGA
TCGTCCTACCGCATGTAACTTTATTCTGTTGTGTTATTTTGCCCAAGTTT
GCAAGGCATTTCTTATAAAGTGGATGGTAAAAAGCACCCCCCCCCATTTA
TTTTCCTCCATTGTTTTTCTCATAGCACAACAAGCCATGCAATTCATTGA
ACATTACGTTCCTGACTCCAACGTTTCTGGAAACAGTACATCAGATGCAG
TTGCCGAAAAACTGAAAGACGGGGTCGTTTTATGTAAACTCATCAATGCT
ATCGAACCTGGGTCCATTAAAAAATTCAACGAATCAAAAATGGCTTTTAA
ACAGATGGAAAACATCGGAAAGTTCTTAGACGCTATCGACCAGTACGGTG
TTGCGAAATCAGATAGTTTCCAAACAGTCGATCTTTATGAGAAACAAAAC
ATGCCAGCTGTCATCAATGCTATCCACGCTTTAGGACGAAAAGCACAAGG
TAAAGGGCGTTATGGCATCGGCCCAAAAGAGTCGCAAGCCAACAAACGGG
AATTTANTCTAAAGGGTGTTATGGTATCGGCCCAAAAGAGTCGCAAGCCA
ACAAACGGGAATTTACTGAAGAGCAAATGCGTGCTGGTTCAAATGTTATC
GGACTTCAAATGGGTTCCAATAAAGGAGCGTCTCAGGCTGGTCAAAACTT
TGGTAAAACTAGATCTATCATGGATTAAGTTGGTGATTTATTTGGCAATG
AACAAGTTTATCTGTCACTTTTTGCATTTGTAACCATGCTGGACTTTTTT
TCGAAGACTTTTTCAATTAATATTTTCGAGATACGTTTTGAAGGGTATTA
TGGGTATTGAAATCAGTATACGAGCACTGGGTACGATTCTTATTGTTTAG
TATTATACAGAGGTAGGAAAATCTATTTGATGTTTATTTTAGAATATTTA
AAGACTATCAAAAACCCTGACGTGTGATGAATTATTACCATGGTTTTCAT
GTCCCTAAGGGCTTCAATGGTTAAAATACCCAGAGCAAGTTAAAAACATT
TTAAGACTTTGTGG Coding sequence (CDS) from alignment at scaffold_319:322315..325728- >TCONS_00059195 ID=TCONS_00059195|Name=TCONS_00059195|organism=Clytia hemisphaerica|type=CDS|length=1374bp|location=Sequence derived from alignment at scaffold_319:322315..325728- (Clytia hemisphaerica)
CACAACAAGCCATGCAATTCATTGAACATTACGTTCCTGACTCCAACGTT
TCTGGAAACAGTACATCAGATGCAGTTGCCGAAAAACTGAAAGACGGGGT
CGTTTTATGTAAACTCATCAATGCTATCGAACCTGGGTCCATTAAAAAAT
TCAACGAATCAAAAATGGCTTTTAAACAGATGGAAAACATCGGAAAGTTC
TTAGACGCTATCGACCAGTACGGTGTTGCGAAATCAGATAGTTTCCAAAC
AGTCGATCTTTATGAGAAACAAAACATGCCAGCTGTCATCAATGCTATCC
ACGCTTTAGGACGAAAAGCACAAGGTAAAGGGCGTTATGGCATCGGCCCA
AAAGAGTCGCAAGCCAACAAACGGGAATTTANTCTAAAGGGTGTTATGGT
ATCGGCCCAAAAGAGTCGCAAGCCAACAAACGGGAATTTACTGAAGAGCA
AATGCGTGCTGGTTCAAATGTTATCGGACTTCAAATGGGTTCCAATAAAG
GAGCGTCTCAGGCTGGTCAAAACTTTGGTAAAACTAGATCTATCATGGAT
TAAGTTGGTGATTTATTTGGCAATGAACAAGTTTATCTGTCACTTTTTGC
ATTTGTAAATGGCAGCAAGACCAAAGGGTTACGGATTAACTGCTGAAGTC
AGAGGAAAAATTGATGGCAAATATGATGGCGAATTAGCACAACAAGCCAT
GCAATTCATTGAACATTACGTTCCTGACTCCAACGTTTCTGGAAACAGTA
CATCAGATGCAGTTGCCGAAAAACTGAAAGACGGGGTCGTTTTATGTAAA
CTCATCAATGCTATCGAACCTGGGTCCATTAAAAAATTCAACGAATCAAA
AATGGCTTTTAAACAGATGGAAAACATCGGAAAGTTCTTAGACGCTATCG
ACCAGTACGGTGTTGCGAAATCAGATAGTTTCCAAACAGTCGATCTTTAT
GAGAAACAAAACATGCCAGCTGTCATCAATGCTATCCACGCTTTAGGACG
AAAAGCACAAGGTAAAGGGCGTTATGGCATCGGCCCAAAAGAGTCGCAAG
CCAACAAACGGGAATTTANTCTAAAGGGTGTTATGGTATCGGCCCAAAAG
AGTCGCAAGCCAACAAACGGGAATTTACTGAAGAGCAAATGCGTGCTGGT
TCAAATGTTATCGGACTTCAAATGGGTTCCAATAAAGGAGCGTCTCAGGC
TGGTCAAAACTTTGGTAAAACTAGATCTATCATGGATTAAGTTGGTGATT
TATTTGGCAATGAACAAGTTTATCTGTCACTTTTTGCATTTGTAAATGGC
AGCAAGACCAAAGGGTTACGGATTAACTGCTGAAGTCAGAGGAAAAATTG
ATGGCAAATATGATGGCGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059195-exon-scaffold_319-1575043694:325687..325728 | TCONS_00059195-exon-scaffold_319-1575043694:325687..325728 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1575043694:323725..323832 | TCONS_00059195-exon-scaffold_319-1575043694:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1575043694:322315..323203 | TCONS_00059195-exon-scaffold_319-1575043694:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1510915933:325687..325728 | TCONS_00059195-exon-scaffold_319-1510915933:325687..325728 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1510915933:323725..323832 | TCONS_00059195-exon-scaffold_319-1510915933:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1510915933:322315..323203 | TCONS_00059195-exon-scaffold_319-1510915933:322315..323203 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1491911889:325687..325728 | TCONS_00059195-exon-scaffold_319-1491911889:325687..325728 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1491911889:323725..323832 | TCONS_00059195-exon-scaffold_319-1491911889:323725..323832 | Clytia hemisphaerica | exon |
| TCONS_00059195-exon-scaffold_319-1491911889:322315..323203 | TCONS_00059195-exon-scaffold_319-1491911889:322315..323203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:322315..325728 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00059195 vs. Swiss-Prot (Human)
Match: CNN1 (Calponin-1 OS=Homo sapiens GN=CNN1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 2.922e-27 Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 3
Query: 81 RPKGYGLTAEVRGKIDGKYDGELAQQAMQFIEHYVPDSNVSGNSTSDAVAEKLKDGVVLCKLINAIEPGSIKKFNESKMAFKQMENIGKFLDAIDQYGVAKSDSFQTVDLYEKQNMPAVINAIHALGRKAQGKG-RYGIGPKESQANKREF 530
R YGL+AEV+ K+ KYD + Q+ ++IE V+G + + LKDG++LC+ IN ++PGS+KK NES + Q+ENIG F+ AI +YGV D F+ DL+E N V + + AL A+ KG + +G K ++ +R+F
Sbjct: 8 RGPAYGLSAEVKNKLAQKYDHQREQELREWIE------GVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGNKVNVGVKYAEKQERKF 152
The following BLAST results are available for this feature:
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