TCONS_00059203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059203
Unique NameTCONS_00059203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4446

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059203 ID=TCONS_00059203|Name=TCONS_00059203|organism=Clytia hemisphaerica|type=transcript|length=4446bp
GGATTATTTGATCAAAATAGATGAGCTGTACAATCTCTTCAAAAGTTGTT
TCTACAATGATCAAGACACTTTGGAAGAGTTTCTTAACTATATCTGCTTA
ATCAACAAAGAAATTGGTATTAATTACAAAAGCGAGAACTACCTTGGAAA
ATCTTGGTATCATCATGCTATCGATTTAGCTGGAGAATCAGAGAATGGAG
CTATGAAAGTGATTGACTGGTTGACACTAAATGAATTTAACAGCAACTTA
GAAGATTCAGAGGGCCAAACCTCCTTGCTTTATTGCtcacaaaaaatatt
caacttCCAGAATAAATCATCAGATTTCTCTAACTCATACAGTCAGATTT
GCGTAAGAATGTTAGAAAGAAATTCTTCAATATGGTTTAAAGATCATCGA
AATAAATCAGCTCTCTACTATTTGATTTTATCCAACAGATGTCTGGACAA
AGTAAAAGAAGCAGTCAATAATTCAGGTTTAGAAGAATGCAGAGAAGGTA
ATTTAGCAATAATCTACagtttttttaatacaaatttatGTTGCTTTGAC
CTGAAGAGAGTTTGTACTCTGGTGGGTGGGTTAGAGTCTTTGGATTTTAG
GAATAATACCattcacaaaattttgctttgaattGTGGGTAGTTGTAAAA
CTGTACTGGATCAGTACCCAGAATGTGCACctacaaaatttattgtttat
tttcctCTTTTATTTCAGAATTTTACCATACTTTCCAAAATTGCTTCAAA
TTACAACCCTCCAAGTCTGACAATTCACAAGAAAATAACACCAAACTAAG
GAATAACTTCAAAGTACTTGAGTTCCTGATTGACAATAATCCAGACTTAA
GAAAGGTTATTTTCAAAGAGAAGTTTCAAGGATATTCATGGTACCACTTT
GCTATCAAACTTGCTGATGAACAAAACCAATCTACTCTTGTTTTAGATGT
GATTCAATGGCTTGAGAAAAAGGGCTTCAATTGCCAAATAAAGGACTCTA
ACAAAAGGACACCTTTGCTATACTGTGCTGAAAAAATGTCCAGGTCTAAA
AAGAAGAATCCTACATATAGCACcattttcataaaacttttaGCAATGGA
CTCAGAATTTCTGATCAAAGATAAGAATGGGAAATCAGCGTTGCAGTATT
TGCTTCTCTCAAATAATTATGCAACAATATTAAAGGATATCATAAGTCAG
TTGACATTAGTTGATTTTATTTATGGCTCATCAACCTTATTGTCTCACTG
CTTTGCTAGATATTGCAAAAAAGATTTCGTCATGAAAGCTTTTTTGCACA
AGCTTaaaacactttttgaaaagagcGAAGCTAGACTATCTACTATCTTG
AACGAAACTGATAATGATGGTTGCATTCCATTGATTCTTGCAATCAGTAA
TCGTTACCTTGAAGATTCTACGAAGCTTTTGTTATTGGATATGACTGGAA
TTTGTAAAGAATTGTTCCTTGACTTCTGTAACCAGGACTTTCACTACAAA
CATAATGCTATTTATGCAAAGTTAATTGAAAAGATTttagcaaacaaaga
tttgaaagagGATTATTTGCAAAACAATGTTCATTGTGATTCTAAAAAGA
CACCGCTGCACTTCTTATGTGCAAAATGTGACAATAAACATTTGGGAATC
ATCAAATGTTTGGTTGGTAATCATAGTCAAAAGATTGATTTCAATGCAAA
AGACATAAATGGTCAAACTGCAATTTTCCAAGTCAAGAATAGTGAAGTTA
TGGAATatcttttaaaggaaaataaattCGACCTCTGGCTTCAAGATAAC
AATGGGAAGAATTTATTGCATCACTACTGTGGGAAAACTTACTGCAATGC
AAAAGTTGTTGAAATGATAATAAATCAAAGTTCAAATGGGAATGCTCAAT
CTCAGAGTATTATCAATATTAGTGATAATAACAAGAATTTGCCTTTCTTT
TATGCCAAAAACAAaggacaaacaaacaaagttcTTAATCTTCTCCGGAC
GAAAGAGATGAATTTGGAGAAGTGGGACAAGGAAGTGCTTGACACAATCA
AAAAAGGTGATTTGAACAGCATCCAGCGGCTCAAAGCTAAAATGCTTGAT
GAGAAACATCCCAATTTTGAGGAATTTATTTCTTTCAGAACTAAACAGAC
TATTCTTCATGCCACAATGCAAGCTTACCCACAATGGGAAGTAAAAACTC
GAAATGAGGTGTTGAAATTTATCATGGAAGAATTTAAAGATGATCTGAGG
AAACATATCACTCTTAAAGACAAAGATGAGAAGGTACTTCTACATTACAT
TGCAGAAGACCTAGATTTAACTTgttgtttctttgaaattttgaaaaacc
ttGGTTGTGATTATTTTGTTGATCAATATGATGTCAGTAATGGATGTAAC
CTCGAACAGAAAACACCGGTTCATTATGCTATTCAGAGAaggaatatttt
tcttcttaaaaaactAGGCAGTGAACACATTGACTTGTGTGCAAATGACG
AGAGTTGCTTAAATTatcttcattatttttgtatACATTACTGTAAAGAC
ACATTTGACAGCCAACACTTCAAGGATTTCATCAACAAATGCTGTAAAAA
TGACATATCCAAATCGTTTGAAAAACTATGCCGCTTGAACAAATCACCCT
TGATTTATGcacttgaaaatgaaaacgttGATGAAGTGTTCTTAAAACAT
ATCCTCAGCTATTGTGAGGCTAAACACCTGATCAGCTGTAAATCATCTTG
TGGATATGCCCTTCAAGAATGCGATTCAAAGTCAGAGACACCATTCGTTA
AAGCCATCAAGTCTAAGGATACTTTTAAGTTGGATTGTATACTTAAGCAA
TTAAGTATTCTATTAGCAACGGAAGAAGCACAATCGATATCATGGTGCTA
TAAAGAGAACTTTATATATCTCCTTATGAAATATGGAAGCACAAAGCAAA
TGGAAGAATTCTTGAAACTAATacacaaaaaacattttaatcatGTTTGG
TCAAAAGCTAAAGAGAAACTTTGTCAGGATAATGATGATAATGTTGTTTT
CCAAAATCAGGATAGTTGTTGGATGGCATTCGTTATTGCAGATTATTTTT
CTTGCCAGCTGACAATCAGCCAATTAAAGCAGACTGAGAAAAATCAACTA
AGGGATCAATTACAAGAAGAAATCCTTTGCAAACGCTTACTTGAAGGAAT
CAGAAAGGCAGGTTTCGGTCTTTATGATGACAGTGAATTTATCCTTAAAC
CCTTTGTTTACAAAGGTGAAGAGTTGCTCAAAAAAATCTTGCAGAAGTAT
CCAGACATCACTGCTTCAGAGTTTATTACTAAAATATCGAAGTTGGGTAG
AAAAGATATTACACTGCATTTGGAATCAtttgaaaagaagaaattagATC
AACTGAACACTGATCAAAGAAGTCAACTAACCTTTCGACTTGGAGCAGAA
TCATCTGGCAGTCCTAACGAACCGCTGATATTTTGTGATCCATTTGGGCT
GTCAGAACAATCAATGACAACTCCATTCAACTTAATAGAGAAAAAGCACC
CTTCTGAACGTATGTTGGAATACCTTCAAAAGCAAGCGCCAGATTTGACT
CTggaaaaaatatacaaattacTTTTGGATTTGCAGGAATGTAAATTGGC
TGCCATGACTGTTGCAAAAATTGTTATCAAAAGAATTGATGTCAGTGGAA
AATGATTTTTCACTGTTAAATTATTTAGTTAGTACAGTATTTGGATGTTA
ACTTTTTATATATTGCGCTAGCAGGATATTCTAATTGTTGTCAATCAACT
GACCATTGTTAAAAAAACTCTTTTGTTTAACATTGACACTTTtcatgaat
ttaaaaaagagcAAATTCAACTCCAATATTGTGGTACTTATAGCCATGAT
TGGGTTTTAAGGataacttttcaactttttagttTATATATTTTAAGATA
ACTTCTTATAAATTGATTCTTTGCAATTTGAGTGATCGATACTGATGCAG
AGCGAATTACTCcattaaaagaaacaaaatcttttttatcaatacGGCTG
GTTTCATGCAACATTGATGCAATCGTCAGTTGGattattagaaaaattaa
aacgtAAACGTTTTTTATTGAATTAAATAGAGATGCTTGACCTAATGTGT
GTTACTTATGCTTATAAAGATTACAATGAATACAATTCAcctgtttattt
tatttcaaatgtaTTAAAAATATATAGAACTATCATTAATCTGATTATTA
TAATGCTTGTATATAATTAAATataattaaattttcttaaataaaaattt
gcatACTAAAAATCTTTGGAATTTTATATAAATGAATTTTATACACATTT
TATATCATCTTAATTATCTTACAGTTTAGTTTAAATATGTATGCAATTTA
ACATTCAGTATTGTAAATGTCAGTATTTAGAAATTATAAAATGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_319:379760..384993-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059203 ID=TCONS_00059203|Name=TCONS_00059203|organism=Clytia hemisphaerica|type=transcript|length=5234bp|location=Sequence derived from alignment at scaffold_319:379760..384993- (Clytia hemisphaerica)
GGATTATTTGATCAAAATAGATGGTGAGTTAAATTGTATTTAATTTATTC ATAGAAATTAAATAAGCAATTCTAAAGCACCAATAGTTCAATGATACTGT AAAGTCTTATTATAAAGATTGATTATACTCAACCTTCTACATCCCGTTTC AGAGCTGTACAATCTCTTCAAAAGTTGTTTCTACAATGATCAAGACACTT TGGAAGAGTTTCTTAACTATATCTGCTTAATCAACAAAGAAATTGGTATT AATTACAAAAGCGAGAACTACCTTGGAAAATCTTGGTATCATCATGCTAT CGATTTAGCTGGAGAATCAGAGAATGGAGCTATGAAAGTGATTGACTGGT TGACACTAAATGAATTTAACAGCAACTTAGAAGATTCAGAGGGCCAAACC TCCTTGCTTTATTGCTCACAAAAAATATTCAACTTCCAGAATAAATCATC AGATTTCTCTAACTCATACAGTCAGATTTGCGTAAGAATGTTAGAAAGAA ATTCTTCAATATGGTTTAAAGATCATCGAAATAAATCAGCTCTCTACTAT TTGATTTTATCCAACAGATGTCTGGACAAAGTAAAAGAAGCAGTCAATAA TTCAGGTTTAGAAGAATGCAGAGAAGGTAATTTAGCAATAATCTACAGTT TTTTTAATACAAATTTATGTTGCTTTGACCTGAAGAGAGTTTGTACTCTG GTGGGTGGGTTAGAGTCTTTGGATTTTAGGAATAATACCATTCACAAAAT TTTGCTTTGAATTGTGGGTAGTTGTAAAACTGTACTGGATCAGTACCCAG AATGTGCACCTACAAAATTTATTGTTTATTTTCCTCTTTTATTTCAGAAT TTTACCATACTTTCCAAAATTGCTTCAAATTACAACCCTCCAAGTCTGAC AATTCACAAGAAAATAACACCAAACTAAGGAATAACTTCAAAGTACTTGA GTTCCTGATTGACAATAATCCAGACTTAAGAAAGGTTATTTTCAAAGAGA AGTTTCAAGGATATTCATGGTACCACTTTGCTATCAAACTTGCTGATGAA CAAAACCAATCTACTCTTGTTTTAGATGTGATTCAATGGCTTGAGAAAAA GGGCTTCAATTGCCAAATAAAGGACTCTAACAAAAGGACACCTTTGCTAT ACTGTGCTGAAAAAATGTCCAGGTCTAAAAAGAAGAATCCTACATATAGC ACCATTTTCATAAAACTTTTAGCAATGGACTCAGAATTTCTGATCAAAGA TAAGAATGGGAAATCAGCGTTGCAGTATTTGCTTCTCTCAAATAATTATG CAACAATATTAAAGGATATCATAAGTCAGTTGACATTAGTTGATTTTATT TATGGCTCATCAACCTTATTGTCTCACTGCTTTGCTAGATATTGCAAAAA AGATTTCGTCATGAAAGCTTTTTTGCACAAGCTTAAAACACTTTTTGAAA AGAGCGAAGCTAGACTATCTACTATCTTGAACGAAACTGATAATGATGGT TGCATTCCATTGATTCTTGCAATCAGTAATCGTTACCTTGAAGATTCTAC GAAGCTTTTGTTATTGGATATGACTGGAATTTGTAAAGAATTGTTCCTTG ACTTCTGTAACCAGGACTTTCACTACAAACATAATGCTATTTATGCAAAG TTAATTGAAAAGATTTTAGCAAACAAAGATTTGAAAGAGGATTATTTGCA AAACAATGTTCATTGTGATTCTAAAAAGACACCGCTGCACTTCTTATGTG CAAAATGTGACAATAAACATTTGGGAATCATCAAATGTTTGGTTGGTAAT CATAGTCAAAAGATTGATTTCAATGCAAAAGACATAAATGGTCAAACTGC AATTTTCCAAGTCAAGAATAGTGAAGTTATGGAATATCTTTTAAAGGAAA ATAAATTCGACCTCTGGCTTCAAGATAACAATGGGAAGAATTTATTGCAT CACTACTGTGGGAAAACTTACTGCAATGCAAAAGTTGTTGAAATGATAAT AAATCAAAGTTCAAATGGGAATGCTCAATCTCAGAGTATTATCAATATTA GTGATAATAACAAGAATTTGCCTTTCTTTTATGCCAAAAACAAAGGACAA ACAAACAAAGTTCTTAATCTTCTCCGGACGAAAGGTATGTTATAAAATTG TTCAAATTAGTAATACAAACATAATATGTCTGAAATTCAAACATTCAAGA AAACTCAAAATGAAGTCAGTAATGAGTTTTTGTAACCATTTTTGGCAACG ATTGCTGAATGCTTGGTTGCTGAATGCCATAAGTGTGAAGATACTTCTTT ATACTTAAGAATCTCTTACAAATCCTAGAGTAGTCATTTTTAAATCAACC ATTTCTGGTTAAATGATCTGAATAGAATTTTTTTTTCTAAGCCATTTCAA CATTCAAGAAAACGCTCTCTTCTTCTTTTAGAGATGAATTTGGAGAAGTG GGACAAGGAAGTGCTTGACACAATCAAAAAAGGTGATTTGAACAGCATCC AGCGGCTCAAAGCTAAAATGCTTGATGAGAAACATCCCAATTTTGAGGAA TTTATTTCTTTCAGAACTAAACAGACTATTCTTCATGCCACAATGCAAGC TTACCCACAATGGGAAGTAAAAACTCGAAATGAGGTGTTGAAATTTATCA TGGAAGAATTTAAAGATGATCTGAGGAAACATATCACTCTTAAAGACAAA GATGAGAAGGTACTTCTACATTACATTGCAGAAGACCTAGATTTAACTTG TTGTTTCTTTGAAATTTTGAAAAACCTTGGTTGTGATTATTTTGTTGATC AATATGATGTCAGTAATGGATGTAACCTCGAACAGAAAACACCGGTTCAT TATGCTATTCAGAGAAGGAATATTTTTCTTCTTAAAAAACTAGGCAGTGA ACACATTGACTTGTGTGCAAATGACGAGAGTTGCTTAAATTATCTTCATT ATTTTTGTATACATTACTGTAAAGACACATTTGACAGCCAACACTTCAAG GATTTCATCAACAAATGCTGTAAAAATGACATATCCAAATCGTTTGAAAA ACTATGCCGCTTGAACAAATCACCCTTGATTTATGCACTTGAAAATGAAA ACGTTGATGAAGTGTTCTTAAAACATATCCTCAGCTATTGTGAGGCTAAA CACCTGATCAGCTGTAAATCATCTTGTGGATATGCCCTTCAAGAATGCGA TTCAAAGTCAGAGACACCATTCGTTAAAGCCATCAAGTCTAAGGATACTT TTAAGTTGGATTGTATACTTAAGCAATTAAGTATTCTATTAGCAACGGAA GAAGCACAATCGATATCATGGTGCTATAAAGAGAACTTTATATATCTCCT TATGAAATATGGAAGCACAAAGCAAATGGAAGAATTCTTGAAACTAATAC ACAAAAAACATTTTAATCATGTTTGGTCAAAAGCTAAAGAGAAACTTTGT CAGGATAATGATGATAATGTTGTTTTCCAAAATCAGGATAGTTGTTGGAT GGCATTCGTTATTGCAGGTAAGACCTGACATTTTAAAAGAGCACATTTGA ATCAAGTGAAAAGAGAAAAACATTTAAGATGCACTCACAAAGATAGCAGC TATCTTCTGAGCCTCCATGAGAATGAGCTATAGTGGAATTAATAATGAGT TGTTTCATATTTGTTGTCAATTTACTTTTTATTTTCTTTTGCTACCTGTT GCTACACCTGCACAATCTAGATTCACCTAAAACTTTTTATTTTTTTGTAT TAATCCAGTACAGCTCAGGATAAAATTCTTCAACCTTTTCTCATAGTAAT ACCTTGAAATTCATCAGACTTAAAAAGAGGTAAAAAGTGTTATAAGAGTG AATTAACCGATCAATTTTCTTTTTACCAGATTATTTTTCTTGCCAGCTGA CAATCAGCCAATTAAAGCAGACTGAGAAAAATCAACTAAGGGATCAATTA CAAGAAGAAATCCTTTGCAAACGCTTACTTGAAGGAATCAGAAAGGCAGG TTTCGGTCTTTATGATGACAGTGAATTTATCCTTAAACCCTTTGTTTACA AAGGTGAAGAGTTGCTCAAAAAAATCTTGCAGAAGTATCCAGACATCACT GCTTCAGAGTTTATTACTAAAATATCGAAGTTGGGTAGAAAAGATATTAC ACTGCATTTGGAATCATTTGAAAAGAAGAAATTAGATCAACTGAACACTG ATCAAAGAAGTCAACTAACCTTTCGACTTGGAGCAGAATCATCTGGCAGT CCTAACGAACCGCTGATATTTTGTGATCCATTTGGGCTGTCAGAACAATC AATGACAACTCCATTCAACTTAATAGAGAAAAAGCACCCTTCTGAACGTA TGTTGGAATACCTTCAAAAGCAAGCGCCAGATTTGACTCTGGAAAAAATA TACAAATTACTTTTGGATTTGCAGGAATGTAAATTGGCTGCCATGACTGT TGCAAAAATTGTTATCAAAAGAATTGATGTCAGTGGAAAATGATTTTTCA CTGTTAAATTATTTAGTTAGTACAGTATTTGGATGTTAACTTTTTATATA TTGCGCTAGCAGGATATTCTAATTGTTGTCAATCAACTGACCATTGTTAA AAAAACTCTTTTGTTTAACATTGACACTTTTCATGAATTTAAAAAAGAGC AAATTCAACTCCAATATTGTGGTACTTATAGCCATGATTGGGTTTTAAGG ATAACTTTTCAACTTTTTAGTTTATATATTTTAAGATAACTTCTTATAAA TTGATTCTTTGCAATTTGAGTGATCGATACTGATGCAGAGCGAATTACTC CATTAAAAGAAACAAAATCTTTTTTATCAATACGGCTGGTTTCATGCAAC ATTGATGCAATCGTCAGTTGGATTATTAGAAAAATTAAAACGTAAACGTT TTTTATTGAATTAAATAGAGATGCTTGACCTAATGTGTGTTACTTATGCT TATAAAGATTACAATGAATACAATTCACCTGTTTATTTTATTTCAAATGT ATTAAAAATATATAGAACTATCATTAATCTGATTATTATAATGCTTGTAT ATAATTAAATATAATTAAATTTTCTTAAATAAAAATTTGCATACTAAAAA TCTTTGGAATTTTATATAAATGAATTTTATACACATTTTATATCATCTTA ATTATCTTACAGTTTAGTTTAAATATGTATGCAATTTAACATTCAGTATT GTAAATGTCAGTATTTAGAAATTATAAAATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037281XLOC_037281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059203-exon-scaffold_319-1575043694:384971..384993TCONS_00059203-exon-scaffold_319-1575043694:384971..384993Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1575043694:382860..384841TCONS_00059203-exon-scaffold_319-1575043694:382860..384841Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1575043694:381477..382562TCONS_00059203-exon-scaffold_319-1575043694:381477..382562Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1575043694:379760..381114TCONS_00059203-exon-scaffold_319-1575043694:379760..381114Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1510915933:384971..384993TCONS_00059203-exon-scaffold_319-1510915933:384971..384993Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1510915933:382860..384841TCONS_00059203-exon-scaffold_319-1510915933:382860..384841Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1510915933:381477..382562TCONS_00059203-exon-scaffold_319-1510915933:381477..382562Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1510915933:379760..381114TCONS_00059203-exon-scaffold_319-1510915933:379760..381114Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1491911889:384971..384993TCONS_00059203-exon-scaffold_319-1491911889:384971..384993Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1491911889:382860..384841TCONS_00059203-exon-scaffold_319-1491911889:382860..384841Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1491911889:381477..382562TCONS_00059203-exon-scaffold_319-1491911889:381477..382562Clytia hemisphaericaexon
TCONS_00059203-exon-scaffold_319-1491911889:379760..381114TCONS_00059203-exon-scaffold_319-1491911889:379760..381114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:379760..384993 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.502308 0.397299 0 0 0.376963 0.405373 0.165929 0.157273 0.4769 0.615913 1.69837 0.764305 1.45419 1.3869 1.09846 0.774874 1.04711 2.43395 1.58049 0.478084 1.56084 0.45955 0.639444 0.510268 0.887726 1.37772 0.359774 0.978072 0.209977 0.446526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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