|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059205 ID=TCONS_00059205|Name=TCONS_00059205|organism=Clytia hemisphaerica|type=transcript|length=1055bp
TAAATTCCACCAATCAGATTCACAGAACCATAGCAAGTAAGTAAACTAAA
CATGGCGCCGAAGAAGAAAGTTCGAAAGGGCAAATCatccaaaaaaaaag
gaaagaaatctgAAAAAGATGTCGTTGAGAAACAAGCTGACCTTTTCATT
CAATCAGAAAATCTTCATAGAATGTTTATTGATCGTATTGGCACTTGGTT
GCTCTCAAATTTTGGCCGTGTTGTTGATATATTCAGAAAATTTGACAGGA
ATGGGGATGGCGTTTTAACATATGAAGAATTTTTTGCAGGGATGAAAGAT
CTAGAGGCTCCATGCAATCAGATTGAACTTTTTGTACTTGCAAAAACAGT
GGATAAAAATCTTGATGGTAATATTGAATATAATGAATTTTCACAAGGTA
TAAGGTACAGGCGACCAGTAAAAGTAGAGCAAGATGATGGATTAcctgtt
ttgaaaatttcaagagAAAAATTTGACAAGTGCCCAGATTGTAGTATTAA
GAAGTGGAACTTTAGAGCAAAGAAATCACTCTTTTACTCTTTGGATTTAT
TACTTCATAGTATGAAAGGAATAACAAATTTCACTGGTCACTTAAGGTCT
TTGCTGGTTGAGTCTAACTTAACAATTCAAGGACTGATAAATAAAGTTCA
AGAACAATATGATCAAGCATTTAAAGATATTATTATTTTCTCACTAAATG
GAGATTGTAAAGAAATTTATGAGATTGGACAGACTATTGATGATAGCATT
GGTTTTGAAGGAGGCAGTGAAGAAGATCCAACATCAATAACACTTTTCTA
TGAACTGGGCATTAAAGATTTGATTGAATGTCCAATACTGCAGAGTGATc
attattttgaccgtaaaTAATATGTTTAtgctaaataaaaaattgtcaGT
AATTCTTTGTTACGGGCCCAATCTTTGTACACATTTTtgcaaataatgtt
ttttttaatattagaCATTCAACTCAAGTGATAATGTTTCAGAAAATAta
caaaacaaatattttgttaaaaaatgctgtcaaATTACCCTCTCTAtgac
atgaa Run BLAST on NCBI protein sequence of TCONS_00059205-protein >TCONS_00059205-protein ID=TCONS_00059205-protein|Name=TCONS_00059205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MAPKKKVRKGKSSKKKGKKSEKDVVEKQADLFIQSENLHRMFIDRIGTWL
LSNFGRVVDIFRKFDRNGDGVLTYEEFFAGMKDLEAPCNQIELFVLAKTV
DKNLDGNIEYNEFSQGIRYRRPVKVEQDDGLPVLKISREKFDKCPDCSIK
KWNFRAKKSLFYSLDLLLHSMKGITNFTGHLRSLLVESNLTIQGLINKVQ
EQYDQAFKDIIIFSLNGDCKEIYEIGQTIDDSIGFEGGSEEDPTSITLFY
ELGIKDLIECPILQSDHYFDRK Run BLAST on NCBI transcript from alignment at scaffold_319:56088..57142 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059205 ID=TCONS_00059205|Name=TCONS_00059205|organism=Clytia hemisphaerica|type=transcript|length=1055bp|location=Sequence derived from alignment at scaffold_319:56088..57142 (Clytia hemisphaerica)
ttcatgtcaTAGAGAGGGTAATttgacagcattttttaacaaaatatttg
ttttgtaTATTTTCTGAAACATTATCACTTGAGTTGAATGtctaatatta
aaaaaaacattatttgcaAAAATGTGTACAAAGATTGGGCCCGTAACAAA
GAATTACtgacaattttttatttagcaTAAACATATTAtttacggtcaaa
ataatgATCACTCTGCAGTATTGGACATTCAATCAAATCTTTAATGCCCA
GTTCATAGAAAAGTGTTATTGATGTTGGATCTTCTTCACTGCCTCCTTCA
AAACCAATGCTATCATCAATAGTCTGTCCAATCTCATAAATTTCTTTACA
ATCTCCATTTAGTGAGAAAATAATAATATCTTTAAATGCTTGATCATATT
GTTCTTGAACTTTATTTATCAGTCCTTGAATTGTTAAGTTAGACTCAACC
AGCAAAGACCTTAAGTGACCAGTGAAATTTGTTATTCCTTTCATACTATG
AAGTAATAAATCCAAAGAGTAAAAGAGTGATTTCTTTGCTCTAAAGTTCC
ACTTCTTAATACTACAATCTGGGCACTTGTCAAATTTTTctcttgaaatt
ttcaaaacaggTAATCCATCATCTTGCTCTACTTTTACTGGTCGCCTGTA
CCTTATACCTTGTGAAAATTCATTATATTCAATATTACCATCAAGATTTT
TATCCACTGTTTTTGCAAGTACAAAAAGTTCAATCTGATTGCATGGAGCC
TCTAGATCTTTCATCCCTGCAAAAAATTCTTCATATGTTAAAACGCCATC
CCCATTCCTGTCAAATTTTCTGAATATATCAACAACACGGCCAAAATTTG
AGAGCAACCAAGTGCCAATACGATCAATAAACATTCTATGAAGATTTTCT
GATTGAATGAAAAGGTCAGCTTGTTTCTCAACGACATCTTTTTcagattt
ctttcctttttttttggatGATTTGCCCTTTCGAACTTTCTTCTTCGGCG
CCATGTTTAGTTTACTTACTTGCTATGGTTCTGTGAATCTGATTGGTGGA
ATTTA Coding sequence (CDS) from alignment at scaffold_319:56088..57142 >TCONS_00059205 ID=TCONS_00059205|Name=TCONS_00059205|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_319:56088..57142 (Clytia hemisphaerica)
TTAtttacggtcaaaataatgATCACTCTGCAGTATTGGACATTCAATCA
AATCTTTAATGCCCAGTTCATAGAAAAGTGTTATTGATGTTGGATCTTCT
TCACTGCCTCCTTCAAAACCAATGCTATCATCAATAGTCTGTCCAATCTC
ATAAATTTCTTTACAATCTCCATTTAGTGAGAAAATAATAATATCTTTAA
ATGCTTGATCATATTGTTCTTGAACTTTATTTATCAGTCCTTGAATTGTT
AAGTTAGACTCAACCAGCAAAGACCTTAAGTGACCAGTGAAATTTGTTAT
TCCTTTCATACTATGAAGTAATAAATCCAAAGAGTAAAAGAGTGATTTCT
TTGCTCTAAAGTTCCACTTCTTAATACTACAATCTGGGCACTTGTCAAAT
TTTTctcttgaaattttcaaaacaggTAATCCATCATCTTGCTCTACTTT
TACTGGTCGCCTGTACCTTATACCTTGTGAAAATTCATTATATTCAATAT
TACCATCAAGATTTTTATCCACTGTTTTTGCAAGTACAAAAAGTTCAATC
TGATTGCATGGAGCCTCTAGATCTTTCATCCCTGCAAAAAATTCTTCATA
TGTTAAAACGCCATCCCCATTCCTGTCAAATTTTCTGAATATATCAACAA
CACGGCCAAAATTTGAGAGCAACCAAGTGCCAATACGATCAATAAACATT
CTATGAAGATTTTCTGATTGAATGAAAAGGTCAGCTTGTTTCTCAACGAC
ATCTTTTTcagatttctttcctttttttttggatGATTTGCCCTTTCGAA
CTTTCTTCTTCGGCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059205-exon-scaffold_319-1491911889:56088..57142 | TCONS_00059205-exon-scaffold_319-1491911889:56088..57142 | Clytia hemisphaerica | exon |
| TCONS_00059205-exon-scaffold_319-1510915933:56088..57142 | TCONS_00059205-exon-scaffold_319-1510915933:56088..57142 | Clytia hemisphaerica | exon |
| TCONS_00059205-exon-scaffold_319-1575043694:56088..57142 | TCONS_00059205-exon-scaffold_319-1575043694:56088..57142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:56088..57142 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
|
