TCONS_00059206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059206
Unique NameTCONS_00059206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059206 ID=TCONS_00059206|Name=TCONS_00059206|organism=Clytia hemisphaerica|type=transcript|length=803bp
GCCCgttatatctttgtttgaacTCCTTCTCAGTGAGACCAATGTAAACT
TTTTTCTCGTGATCTGGGGCAGTTACTTCGCATTTGTAAATTACTCAGAG
Ttctacaaaaataaagttttgaatttttactatataatatatataaactt
cttcaataaaatcaaaggccTTAGTGCTTGCGGTTATTGGgaacaattga
aaattttgaagatgtaTTCTCTACATGGGAGGAGGGAGAgatttatatta
tattatttattatttatttgatttgaattaTTTATATTTGGTCGATACTA
GAAGGTatagtaccaaatttcagccacactGAAGGAGACGGCACTGTAAA
AGGTAGTGTCTCCCCTTCAACTACAAACCGTCATGGTCGAAAATGCCAAC
TACGAACAATCGAACGAAGCAGCTTTCGCAAATTTATTTGTGAGAGCTTA
GCTGTACAGGGTCCAAAACTCTTCAACAGTATTCCCTCTGACATATTGTA
CAAAATATCACTGGCTGTTCAAAAGATTCATTCAAGAAACATTTAAATGA
CTCGATAAATATATGTGCTCTATACCCGACGAACCTCACACTACGTCGCG
ACAAACAAGATTAGCTGAATCAAATGCTCTTTTCGATCAAATTACACGTG
TTGTGCTCAACGAACTGGCAGACTGGACAGATgaatatcatcaaatcaaa
ctgAAGTATACTGAAGTAAGTATAAACTGCTCTTGATGCGTTGTGTGTTC
TAAGCTAActtaacttggtctaatgttgacatccctcctctaattccgac
acc
Run BLAST on NCBI

transcript from alignment at scaffold_319:58731..59533

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059206 ID=TCONS_00059206|Name=TCONS_00059206|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at scaffold_319:58731..59533 (Clytia hemisphaerica)
ggtgtcggaattagaggagggatgtcaacattagaccaagttaagTTAGC
TTAGAACACACAACGCATCAAGAGCAGTTTATACTTACTTCAGTATACTT
cagtttgatttgatgatattcATCTGTCCAGTCTGCCAGTTCGTTGAGCA
CAACACGTGTAATTTGATCGAAAAGAGCATTTGATTCAGCTAATCTTGTT
TGTCGCGACGTAGTGTGAGGTTCGTCGGGTATAGAGCACATATATTTATC
GAGTCATTTAAATGTTTCTTGAATGAATCTTTTGAACAGCCAGTGATATT
TTGTACAATATGTCAGAGGGAATACTGTTGAAGAGTTTTGGACCCTGTAC
AGCTAAGCTCTCACAAATAAATTTGCGAAAGCTGCTTCGTTCGATTGTTC
GTAGTTGGCATTTTCGACCATGACGGTTTGTAGTTGAAGGGGAGACACTA
CCTTTTACAGTGCCGTCTCCTTCagtgtggctgaaatttggtactatACC
TTCTAGTATCGACCAAATATAAAtaattcaaatcaaataaataataaata
atataatataaatcTCTCCCTCCTCCCATGTAGAGAAtacatcttcaaaa
ttttcaattgttcCCAATAACCGCAAGCACTAAggcctttgattttattg
aagaagtttatatatattatatagtaaaaattcaaaactttatttttgta
gaACTCTGAGTAATTTACAAATGCGAAGTAACTGCCCCAGATCACGAGAA
AAAAGTTTACATTGGTCTCACTGAGAAGGAgttcaaacaaagatataacG
GGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037283XLOC_037283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059206-exon-scaffold_319-1491911889:58731..59533TCONS_00059206-exon-scaffold_319-1491911889:58731..59533Clytia hemisphaericaexon
TCONS_00059206-exon-scaffold_319-1510915933:58731..59533TCONS_00059206-exon-scaffold_319-1510915933:58731..59533Clytia hemisphaericaexon
TCONS_00059206-exon-scaffold_319-1575043694:58731..59533TCONS_00059206-exon-scaffold_319-1575043694:58731..59533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:58731..59533 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263879	0.313603	0.198743	0.848956	1.27622	1.2381	0.768189	0.526178	0.387142	0.358147	0.643865	0.773612	0.730915	0.404159	0.142395	0.170811	0.247423	0.271561	0.095016	0.528604	0.188621	0.0986357	0.0966178	0.185199	0.452218	0.908875	0.18495	0.120018	0.443075	0.168173
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top