|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059219 ID=TCONS_00059219|Name=TCONS_00059219|organism=Clytia hemisphaerica|type=transcript|length=3692bpRun BLAST on NCBI protein sequence of TCONS_00059219-protein >TCONS_00059219-protein ID=TCONS_00059219-protein|Name=TCONS_00059219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp MALASLYDGVDLGKDKEKSANLNPTKIAGWSDNLQFMKTQLQLKKASTSKRun BLAST on NCBI transcript from alignment at scaffold_32:17975..27322+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059219 ID=TCONS_00059219|Name=TCONS_00059219|organism=Clytia hemisphaerica|type=transcript|length=9348bp|location=Sequence derived from alignment at scaffold_32:17975..27322+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_32:17975..27322+ >TCONS_00059219 ID=TCONS_00059219|Name=TCONS_00059219|organism=Clytia hemisphaerica|type=CDS|length=13464bp|location=Sequence derived from alignment at scaffold_32:17975..27322+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059219 vs. Swiss-Prot (Human)
Match: ILKAP (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.102e-67 Identity = 120/284 (42.25%), Postives = 184/284 (64.79%), Query Frame = 2
Query: 536 FLLCSYLTERQGERDGMEDNTIILDDCTKDIFPLVEKSLPNCDSEKRAAFIGVFDGHGGNKASLYAKNHLFKNIMERIPKETVKNFDRELKISLIQAYKDTDEGFIKEAYKVSPPLKDGSTASCILQINHTLYVSNIGDSKAILVRSSYEGKRR-IIPLTRDHSPTDYEERQRIQNAGGVVRDGRVKGILEVSRAFGDARFKKY-VICTPNVLKCTLIKDDAYMILACDGLWKAFNPQEAVDFVDKILESDKGDSTE-------RFQQASRELCNEAVRKCSGD 1360
F L Y+ ER+GER+ M+D +IL+D T E+ P R ++ VFDGHGG +AS +A +L +N++ + PK V + ++ +K L+ +K TDE F+K+A P KDGSTA+C+L +++ LY++N+GDS+AIL R + E ++ + L+++H+PT YEER RIQ AGG VRDGRV G+LEVSR+ GD ++K+ V P++ +C L +D +++LACDGL+K F P+EAV+F+ LE +K + E R++ A L N+AV++ S D
Sbjct: 105 FGLKGYVAERKGEREEMQDAHVILNDIT-------EECRPPSSLITRVSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKDGSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVRDGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEKIQTREGKSAADARYEAACNRLANKAVQRGSAD 381 The following BLAST results are available for this feature:
BLAST of TCONS_00059219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.