TCONS_00059221 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059221
Unique NameTCONS_00059221
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059221 ID=TCONS_00059221|Name=TCONS_00059221|organism=Clytia hemisphaerica|type=transcript|length=1940bp
AAAAAGTGCCAATTTAAACCCAACCAAAATTGCTGGTTGGTCAGACAATC
TTCAATTCATGAAAACACAACTACAGTTAAAGAAGGCATCCACTTCTAAA
GGAATCaaaGGTGGAAAATCAGTTTTATCCACAGGGCCTGGTAATATAAC
TTTAtcTTCAATAATGGCACCGGCAGACAAACAAGTTGTTTTGATCGATG
AGTACAATCCATTACGACCGAATGATTATAACGACTTCAAGGTACGCATG
CGGGAAAAAGAGGAACGTGAAAGACGGGATAAAGAACGGCGACGGGAACG
GGAAGAACGTGAACGGGAACGCGAACGACGTGATAATAAAGACGGCAATG
ACAATCGACGTGATGAACGGAGACGAAGTCCGCATCGTGATGATCAAGAC
AAAGATCGTGATCGTGACCGGAAACGAAGACGCGATGACGATCGTAGTAG
AGATTACGGAGGGCGTGCAGCAATCGCACCTCCGCCCTCATTACTAGAAA
CGACGCCTGTGAATGCGGAAATCATCCAAAAGAAGGAAAACAGTGCCGGA
ACAGGTGGCTTTTCTACAGGAAATCTTATCGCGTCTCAAATCATGGCGAA
ATACGGTTGGAAAGAAGGTCAAGGTTTAGGTCGTGAAGAACAAGGTCTAT
CCACCTGTTTACAAGTCGAGAAAACTGGTAAAAGGGCGGGCAAAATCATC
AACAAAGACGTTGAAAAGGCCAAAGAGAAAGATTCGTTCCCTCCGCCTTC
TTTCCCACCACCCTCCTTTCCTCCACCCATGGGCGGTGCCATGGGTGGTG
TACCGAATTCACCTTCACAGCCACAACCACCGGACGTTTCTGGTAATGAC
TCACAGATGGCGGATCTAATGAAGAACCCATCGAAAGTCGTCCTTTTGAA
GAACATGGTTGGTCCTGGTGAAGTAGATGACGAATTACAGCCGGAGATTG
AGGAAGAATGTACCACAAAATACGGTGATATCATCAAAGTCATCATTTTC
GAGATCCCCAATGCACAAGAAGAAGAGGCTGTTCGTATTTTTGTCGAATT
CAAAAGAATGGAATCTGCCATTAAAGCTTTGATGGATTTGAACAATCGGT
TTTTCGGCGGACGATCCGTCTCTGCATCCTTCTACAATGTCGATAAATTC
CGAAGGCTCGATCTAGCAAGTTGAATGAACAAAATAAGTGTACATCTAGG
TATCATTCACAACCAGGAAATACAGACAACGCTCTGAAAAATGGTGAACT
GTTGAAGAACGAgtaaaaagtcaaattaaaaTAAGCAACATCAGAAATTA
TGAACTCGTGATCAACTAACTATCAATATCAAATTTGGGAGATTTTGACA
CTTTCTTCTGACGTTACATTAAATCTTTCTATGAAAGCAGAAGTCGGAAA
TACGCTATGTCGATTATGGATGATGTAGAGTTCATTGCAAATGCCGTAGA
TTCATCTAAAATATTACGATACAATGATCGACAATTATGAACATTAGATT
GAGAACTAGAGAAGTTATTGCTCTACCAATGGTACTGTCGTTTCTGTAAA
GATTCTACTTCCAAAGCTAAAATTGCACTGGTTTTTTATGTTTCTAATTA
TTTTTCCAGGCTTACTGGCTGAAAATAGAAAGGGTTTGCTTCCAGAGCTA
TGCGAAATAGCATGAGACTGACCAATATTCTGATCTGAAGCTACTTTTCC
CTATCATGCTATTATTAAAGAGTCAAAACAGATGTGTATCTCCGTTAAGT
GTCCCGATCAGTAGAATCTCAGTTCAAGAAGTGAAATCTTAGCCGAAATG
GTATGTTCTCAAGAAACCTTGTAAATTTTGTAATTGATTTTTGCACAATA
AAGAAATTGTTATAAATGGACTATGATGATTTGAAGTCTTTGTATCTCAT
CAACCATCTTTATCAAAGAATACTCTTGCTTTATTATTAC
Run BLAST on NCBI

transcript from alignment at scaffold_32:20020..27322+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059221 ID=TCONS_00059221|Name=TCONS_00059221|organism=Clytia hemisphaerica|type=transcript|length=7303bp|location=Sequence derived from alignment at scaffold_32:20020..27322+ (Clytia hemisphaerica)
AAAAAGTGCCAATTTAAACCCAACCAAAATTGGtaagcttaaaatatttt
ttcaatgtaGTTTTTCTTTCGGTCCTTTTTTTGTTGTAATATTGACTGCT
GGGGGGGttgatcaaataagagcttgtaaaaactccagcttgtcccggtC
ATGTCACTCTTTGacaatttcacagaattttcaaaaatcttgcaCTAAAC
TTGTTTGGATCTGTTTGGACTGTACTACCCTTTTATCTGGAACAAAATAT
TTGATCTTTTAAAAGTTGGAGATAGAGAGggtttactttctttttctttt
ttttcacttttcacttCTTTGCATTTTAGCTGGTTGGTCAGACAATCTTC
AATTCATGAAAACACAACTACAGTTAAAGAAGGCATCCACTTCTAAAGGA
ATCGTAAGAATCCTTTTATTTTGGtcccggggggagggggcactcgattt
ctaaacggcggtatgtgccgccaaaaaatgCAGCTTTTCAACATTGAAAA
GGcacccttacaatgcattttACCAAACTtctcacccttacagtgtagtt
tgatttcatatctaATTTTGCTGAAGCCATTTGAAAATGAGCCTGAGCTG
TCGACATAAtttgcaaaacaaatcaaaatgagtgCGAGTCGAAACTATAA
ATATACATCAGTTTTTTACTATCAGACTTGCAATTCAGTAGTTCctaaac
acacccttacagtatAACAGCTCAAAaaagacccttgtagtgcatTTGAG
GGTctcaaaaaacctacccttacgggcggcacatgccgtaagtcggacca
tatgagtgcacACCCCCATGGGTTTTTGGTTCAAACATTGTTATATGTTT
CTTGATCATTtagaccacgttcacacgcCACGGTTCTGTTTCGCTCCGAA
TCGAAAAGaaccattctattggttaaatctATTgcttacgtcacttctaa
ccagtACAATAGCTTTATTTCTTTTCGGAGCGAACTGAACATCGTCATAA
ACTTACTGGTTTTTTCAATGTCTCGTCCTGTTCATATTGATAGATgaatt
atttctaaattttgcaaacgtttttttttctctttttagaaaGGTGGAAA
ATCAGTTTTATCCACAGGGCCTGGTAATATAACTTTAGTAAGTATCCTTC
GTTGTCGCATTTTGGCGAAGGACCAGTATTGGTACTGGTAAAAGTTAAAC
CATTGTGATATTGTGATAAAGTAGATTTTTTGCNTTGGTACTGGTAAAAG
TTAAACCTTTGTGATATTGTGATAAAGTATATTTTTTGTTACTCAAACCT
CCATATCTCAAATGTTTTGTGGTCCTTCAAGCTATATTACTCTGAACTTA
TTCCTCTTAACCATATGGTCATGTAAAAGAAAACCTGACACAGTAAACAA
TTCATTACTAGACAAGAAACTACTACTAAGTGCATTTTTTGCCTCCCATT
AACCTAAAGATCCCCTACAAGCCAGACTGTTTACAGTGAGTTACGTTGAG
ATACAGCCACCAAACTCTAAAATAAGGAGTGGAATGTACATCAGCAAATC
TAATAACCAATTTCATCCCTCAAGTTACCATTTTGAGACATACGCTATCT
TATCCGCAGCTTAAGTTTTCGAGTTATAAAAGAGGGGTCATTTTTATTac
gttttttttatcttttcagtcTTCAATAATGGCACCGGCAGACAAACAAG
TTGTTTTGATCGATGAGTACAATCCATTACGACCGAATGATTATAACGAC
TTCAAGGTTAATAAATTTAATGTCCGTCAAAGTGTTTCTTCTATCATTTA
GTATGATCCAGGTCCATAACAATCACTGTACCATactgaaaatgttttct
tttacaaactcgaaaaatgaaaagaaaaagatttaaatTCTTGAATTAGA
CCAGTGTCCTAGATTCAtaaaaggccttaaaacaggttttcgtaGAGCAc
tccttagatcagggcaaaattttgatattatgctcctataGGGTGTggag
ttaatcgatagaacttatcaagagTCCCCCtttacaaaatgtttttttcg
agGTCCGAAAATTAAATATCTGATGCttccaacggattcagcgtgaaaag
tagataaagaaaaatggggttatttgttaagtttcgaccacttGGTGCca
agaaatggcatttttaaggcgaaaaatcgatgtttttggcgttttccgat
gatgtcagcattttcagaaaaaatatctCCCATAGCTAGATAGCCCtgaa
tttaaaaatgttatggtttgttaactttcgatgttccgatctcgagatat
ttgctctaaatattgaaaaaaagaaaagaagagaaaagttttttagcata
tttacccaccttaacaatgaaatatctcgagatctagacactAGACCTAG
AAACTTAAGgctcaatctcaaaattagtaccttacaaaatttaaaatttt
actgtGGTGTTCACAGTTCTGTTTTGTCATACAGAGGAATACTCAATGTT
TTCCtatgacaaaaaggccaatcttAAAAACAGAAAGAttgaaagatttt
caattttccaaggcACTTATTTAGAGATTGAAGTTTTAGTCATGTGAACG
ACGATGTATGATTATCTAAACTAGATAATTGTTGGTACAGATTGATTTCG
AAGACaatcattttttaatattttgctaggttttattctaatttttattt
atgCAATTCACTGTAGCTTGGATAACGACGCTCATTGAGAAATGAAATAA
CTAAAGGCTTAAGCTTAAAGAATTTATTTAAGAAATTATTTTAAGCCTAT
GAGTTCCTTATAAATAGGTGAAGATCTCTCAGAATATCCCAGAGTTAGAC
CTCCCAAAAATAAGTAATAGGTATTTTAGGTTTTACCTGACGAACctatt
tcttgaaaaatatagaaatttgGAAATTGACCGTATAAAAACGTCAGACT
TTCGAAAATGTCTTGTAAAACCTATGTCTCTGTGTTTAAGATAAATCTTA
TGTTTTTATAGTTACAGCTGAATTGgttctaatacacctttttacgGTTA
GCTGCTTtgtataaaaagtcaccaaaatttcgagtaagcaaaccatctca
ttggctaaaagcaaaaaaaacataaacaaaaaaatgtccagagtaagagc
acagaaagcacatttttctctaggctacgtcatatcctccttcgtttcga
gcgtaaaactcctactcttcgggatatgcgcactgctcttgttttgaata
ttgaatctCTCCGGATatatcgcatgcgcactgaggttttaatgaaacaa
tagagagtttcgaaacgtAGGCCAATCAGCTgtattttaaacattctttt
atttgaaatctctattgataaacatcttttgttaaAGTTTGCTATTATGT
TTAAGCTTATTAATAAGCAAAATCTACTAGTCTAACTAGTGGCCGCcaat
agcagtgcctatagaccaagagtaaggcctaaaagcctggagctgtctat
tgtgtagactaattTTTCTCATACTCTGCAATCTCTCACAATCTTAACAA
TTGCATCTCGAGAGTTTACATTTCATTCTAGGTACGCATGCGGGAAAAAG
AGGAACGTGAAAGACGGGATAAAGAACGGCGACGGGAACGGGAAGAACGT
GAACGGGAACGCGAACGACGTGATAATAAAGACGGCAATGACAATCGACG
TGATGAACGGTTAACACTCatcataaaaattgaattgcACTTTCTCTCGC
TTGTATCCATTCTTCTTATCTTACTCTTGTCACTTACTCCTAACCTCTTG
TAGTCTCTTCCATTCTTCACTTAATCTCTTGAAGTCTCTAGTAATCAtac
tttttcatttcatctgctTTTTTTAAGTTTCTGATAATCCTTGAGTATAT
ACTTGTTGATATAtatcaacaaaatgtttttcGTACACTTTTGAATTGCA
TTTTCTTGCTCTTCTTCTCTAAATTTCCTCCAAATTTCCTCAACTTTTTC
TATTAGGAGACGAAGTCCGCATCGTGATGATCAAGACAAAGATCGTGATC
GTGACCGGAAACGAAGACGCGATGACGATCGTAGTAGAGGTTTGATTCTT
ATTTGTCAATGTTGtttgaattgtttttctttgaattttaaatCAACGCA
TTTATATGTGTGAAAAACTCTTGTCAGTCTTATATTATCGCAATATTATT
CTGTTCATTAGATTACGGAGGGCGTGCAGCAATCGCACCTCCGCCCTCAT
TACTAGAAACGACGCCTGTGAATGCGGAAATCATCCAAAAGAAGGAAAAC
AGTGCCGGAACAGGTGGCTTTTCTACAGGGTATGTATGAACATGATTGGT
TATTATATTTGAATTCCCGAATTCTCCCGTTTACCTGCGGTTTTTACTTT
ATAGACAATATGTGTTTCTATCGGAGTCTTAGTTTGTAAGTCTTGTATTT
GTAAGTCTTTTGGCTTGACGCAGATAGACATAAAACTAACTTTGTCGCAA
CCATGATTAACCCATTCCCAGAGCAACTTGACTACTCTTTATATCACTGA
CGGTTCTTCCTGCAACCTTATCTTTACAGAAATCTTATCGCGTCTCAAAT
CATGGCGAAATACGGTTGGAAAGAAGGTCAAGGTTTAGGTCGTGAAGAAC
AAGGTCTATCCACCTGTTTACAAGTCGAGAAAACTGGTAAAAGGGCGGGC
AAAATCATCAACAAAGACGTTGAAAAGGCCAAAGAGAAAGATTCGTTCCC
TCCGCCTTCTTTCCCACCACCCTCCTTTCCTCCACCCATGGGCGGTGCCA
TGGGTGGTGTACCGAATTCACCTTCACAGCCACAACCACCGGACGTTTCT
GGTAATGACTCACAGATGGCGGATCTAATGAAGAACCCATCGAAAGTCGT
CCTTTTGAAGGTTAGTCATTGTTTTATCCTACCTATTACACGATACATAA
TAATTAGAACAAATGAGAAAAAGCCCTCTTGATTAAATAAAGCCTGGTGT
CAAAGTAAAGAAAACAAGTAATTCGTGttagtttgaaatattttaaaaaa
gatctaaaactgtttcataaaaaatatttgtcgACAATAATAAatcttta
ttatttattttaaaagatctaaaactatttcaTAAAAGATATTCGTCCAC
AATAATAAatcttaagcaaaaaaaatgtatccAAAAGGGATTTATCGTCA
CTTTTTGTCGACGAATGTTTCACCGATAAGCTAATAAACCATTTCAAACC
ATTTCAAAATAGGCAAGGTGTCTTGTCTGGTTTACAGGCGaacgccggat
tgaaaataaaaatttataggAATAATGGAAACTTTGTCACGCGAAAGAAA
TACAGCGCCAGAGTTAGTACACTGTCCCCAATTGCGTTTTCACGTTTTCT
TGCTTTGAAAAAGGCTGAAGATTTCTAACTTTAAGCTCGATAACTTtatt
cactttcgatttcattgCTTTTCCACAGAACATGGTTGGTCCTGGTGAAG
TAGATGACGAATTACAGCCGGAGATTGAGGAAGAATGTACCACAAAATAC
GGTGATATCATCAAAGTCATCATTTTCGAGGTACTAAAATATCTTTGCCG
ACCACCGTATTTGATGACGTGattaatttttgagaacaattttaatattt
tttgaatctgAAGATACCCAAAActtgttaactttttttttctttcttaa
aaaccTGATTTTAACTCAACTTAGCAGTCCCTGATCATTCCTATTAGAAA
CTGTCCAAGATTTTATTGATTAAATCTTTAAAGCCTAATTTTAACCTTCA
TTTTTTCACTATGTTCGCCTTTGAGCCAACTCATTCGGTATAAAAAGGCT
AAATTTTAGTTATATTTTTGTCTTGAAGATCCCCAATGCACAAGAAGAAG
AGGCTGTTCGTATTTTTGTCGAATTCAAAAGAATGGAATCTGCCATTAAA
GGTATTGTTAAAAGATTTAATCTTTTTAATCAATTTAGCCCTAAAAACAT
GTTACCCAACGAGTCAGATTTGCCGTCTAAGGAAGTTGGTTCgttgtaat
taattttttccttgGACGGCCTCTTGCACACACATTTATTCCACATACTT
TTATTtgctggaagaaaattttagtcCTTTAGGTCAGCCTTGTTTTGTTA
TGTTTCATCAATTTGCTCCCTTGTTTCAAGTCCCTGTTATTTGTAATGGG
TAATCATGACTGCGCACAAATAAACgcttcttttttatcaatagaTTAGG
AATTCTTCATTAGTGTGTGATCAGTCTTATCAGCTCTGCAGAAATGAAAG
TCATCCCATCCTTTCAAAGTTCGTCTCAAAATTATGTTGACACTCAACTT
TTTCATGGAAAGATATTTACGAGGAGAATATTCTAAGGGataaaattaag
ataaaaaaataattttgttttctttgttttctatttcAGCTTTGATGGAT
TTGAACAATCGGTTTTTCGGCGGACGATCCGTCTCTGCATCCTTCTACAA
TGTCGATAAATTCCGAAGGCTCGATCTAGCAAGTTGAATGAACAAAATAA
GTGTACATCTAGGTATCATTCACAACCAGGAAATACAGACAACGCTCTGA
AAAATGGTGAACTGTTGAAGAACGAgtaaaaagtcaaattaaaaTAAGCA
ACATCAGAAATTATGAACTCGTGATCAACTAACTATCAATATCAAATTTG
GGAGATTTTGACACTTTCTTCTGACGTTACATTAAATCTTTCTATGAAAG
CAGAAGTCGGAAATACGCTATGTCGATTATGGATGATGTAGAGTTCATTG
CAAATGCCGTAGATTCATCTAAAATATTACGATACAATGATCGACAATTA
TGAACATTAGATTGAGAACTAGAGAAGTTATTGCTCTACCAATGGTACTG
TCGTTTCTGTAAAGATTCTACTTCCAAAGCTAAAATTGCACTGGTTTTTT
ATGTTTCTAATTATTTTTCCAGGCTTACTGGCTGAAAATAGAAAGGGTTT
GCTTCCAGAGCTATGCGAAATAGCATGAGACTGACCAATATTCTGATCTG
AAGCTACTTTTCCCTATCATGCTATTATTAAAGAGTCAAAACAGATGTGT
ATCTCCGTTAAGTGTCCCGATCAGTAGAATCTCAGTTCAAGAAGTGAAAT
CTTAGCCGAAATGGTATGTTCTCAAGAAACCTTGTAAATTTTGTAATTGA
TTTTTGCACAATAAAGAAATTGTTATAAATGGACTATGATGATTTGAAGT
CTTTGTATCTCATCAACCATCTTTATCAAAGAATACTCTTGCTTTATTAT
TAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037296XLOC_037296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059221-exon-scaffold_32-1491911889:20020..20051TCONS_00059221-exon-scaffold_32-1491911889:20020..20051Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:20020..20051TCONS_00059221-exon-scaffold_32-1510915933:20020..20051Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:20020..20051TCONS_00059221-exon-scaffold_32-1575043694:20020..20051Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:20349..20422TCONS_00059221-exon-scaffold_32-1491911889:20349..20422Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:20349..20422TCONS_00059221-exon-scaffold_32-1510915933:20349..20422Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:20349..20422TCONS_00059221-exon-scaffold_32-1575043694:20349..20422Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:21109..21156TCONS_00059221-exon-scaffold_32-1491911889:21109..21156Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:21109..21156TCONS_00059221-exon-scaffold_32-1510915933:21109..21156Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:21109..21156TCONS_00059221-exon-scaffold_32-1575043694:21109..21156Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:21689..21775TCONS_00059221-exon-scaffold_32-1491911889:21689..21775Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:21689..21775TCONS_00059221-exon-scaffold_32-1510915933:21689..21775Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:21689..21775TCONS_00059221-exon-scaffold_32-1575043694:21689..21775Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:23601..23728TCONS_00059221-exon-scaffold_32-1491911889:23601..23728Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:23601..23728TCONS_00059221-exon-scaffold_32-1510915933:23601..23728Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:23601..23728TCONS_00059221-exon-scaffold_32-1575043694:23601..23728Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:24026..24108TCONS_00059221-exon-scaffold_32-1491911889:24026..24108Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:24026..24108TCONS_00059221-exon-scaffold_32-1510915933:24026..24108Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:24026..24108TCONS_00059221-exon-scaffold_32-1575043694:24026..24108Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:24231..24348TCONS_00059221-exon-scaffold_32-1491911889:24231..24348Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:24231..24348TCONS_00059221-exon-scaffold_32-1510915933:24231..24348Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:24231..24348TCONS_00059221-exon-scaffold_32-1575043694:24231..24348Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:24599..24929TCONS_00059221-exon-scaffold_32-1491911889:24599..24929Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:24599..24929TCONS_00059221-exon-scaffold_32-1510915933:24599..24929Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:24599..24929TCONS_00059221-exon-scaffold_32-1575043694:24599..24929Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:25498..25599TCONS_00059221-exon-scaffold_32-1491911889:25498..25599Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:25498..25599TCONS_00059221-exon-scaffold_32-1510915933:25498..25599Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:25498..25599TCONS_00059221-exon-scaffold_32-1575043694:25498..25599Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:25898..25970TCONS_00059221-exon-scaffold_32-1491911889:25898..25970Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:25898..25970TCONS_00059221-exon-scaffold_32-1510915933:25898..25970Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:25898..25970TCONS_00059221-exon-scaffold_32-1575043694:25898..25970Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1491911889:26459..27322TCONS_00059221-exon-scaffold_32-1491911889:26459..27322Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1510915933:26459..27322TCONS_00059221-exon-scaffold_32-1510915933:26459..27322Clytia hemisphaericaexon
TCONS_00059221-exon-scaffold_32-1575043694:26459..27322TCONS_00059221-exon-scaffold_32-1575043694:26459..27322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:20020..27322 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.4972	16.0373	7.16455	7.99998	28.4883	22.9965	25.798	24.8073	18.6236	15.9081	10.0619	10.9575	10.4889	9.29504	8.1197	9.22969	19.3513	17.0141	4.74183	9.94432	12.8832	14.7565	15.2122	13.845	13.1973	14.7214	5.29606	4.65711	10.6691	10.6239
Blast
[Close]
BLAST of TCONS_00059221 vs. Swiss-Prot (Human)
Match: SPF45 (Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.433e-44
Identity = 118/264 (44.70%), Postives = 151/264 (57.20%), Query Frame = 2 
Query:  461 GRAAIAPPPSLLETT--------------------------PVNAEIIQKKENSAGTGGF--STGNLIASQIMAKYGWKXXXXXXXXXXXXSTCLQVEKTGKRAGKIINKDVEKAKEKDXXXXXXXXXXXXXXXMGGAMGGVPNSPSQPQPPDVSGNDSQMADLMKNPSKVVLLKNMVGPGEVDDELQPEIEEECTTKYGDIIKVIIFEIPNAQEEEAVRIFVEFKRMESAIKALMDLNNRFFGGRSVSASFYNVDKFRRLDLA 1168
            G AAIAPP SL+E                            PV  E  + +  +  +  F  + G  +A +IM KYG++EGQGLG+ EQGLST L VEKT KR GKII  D   A EKD+                        S S P           + +++K P+KVVLL+NMVG GEVD++L+ E +EEC  KYG + K +IFEIP A ++EAVRIF+EF+R+ESAIKA++DLN R+FGGR V A FYN+DKFR LDLA
Sbjct:  171 GGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGD---ATEKDASK---------------------KSDSNP-----------LTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398
The following BLAST results are available for this feature:
BLAST of TCONS_00059221 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPF451.433e-4444.70Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 S... [more]
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