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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059225 ID=TCONS_00059225|Name=TCONS_00059225|organism=Clytia hemisphaerica|type=transcript|length=1447bp
GAAAAAGGATCTAGCAGCTGCGCTGATGTAAACAAAACTAGCCCGtgatc
gtttttttttaataatcatTACGTGATTTTCGGCACAcggtaaattttac
tttagaaCACATGCCTTTAGAACGACGAAGTGACGAAGGGAACGGAGAGC
AAAGGCACGTGGTTTACACttagaaatcaaataaaatacaaattttgact
taaacacACCACAAAATCTACAATGGTTGACGAAGAGATAAACCCAAAAG
CTTACCCCTTGGCTGATGCTACCCTAACTGTCACTATTCTTGACTTGATT
CAACAAGCTGCAAACTACAAGCAACTCTTGAAAGGAGCAAACGAGTCAAC
AAAAGCATTGAATCGTGGTATAGCAGAATTCATTGTGATGGCTGCTGATG
CAGAACCCTTGGAAATCCTTTTGCATTTACCTTTGCTGTGTGAAGATAAG
AATGTACCTTACGTTTTCGTGAAGTCGAAACAAGCTTTGGGTCGTGCCAC
CGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCACCATTAACGAAGGCT
CACAACTGAAAAGTCAAATCCAATCCTTACAAAACGCCATCGAGAAGCTT
CTTCTTTAAACAGGAGTGTTAGCCGAGTTATTCATACATGTACGTCCTTT
CCTCGATCGCTTATCGTGTATCTTAACAGGATGTTGCTTGGTGGTTAGCT
AATGAGAGGGGTTGATCGAGAGGTACAGCTTTTTTACAGTATGTTTCTCT
GTTTCCAGTAAGCAAacctgtaaaaatattttcccgttCAAAGTCATTCT
AAATCTTAAGTTATCGAAAAATTCCTTtagggaaaatatttttaaggatG
TGCCTTCTGAAATGGGGTAAGGTTTTAGTCAGGGTTTTTCTCTAAAAGAG
GTTGCTGTTTTCACAGCATGCTATCAGTTGTCACCAGTTTAAACTCGAGA
CATTTCCTTGCGTCATTCCTCTCTTTTTCCGCCCTATTGGTGTTTTTTCT
ACTGCATTTGTTGTCTTATTTGtctcctcgttttcaaaatactgTTTCGA
CTTATATCCTAAATAAGTTTTAGAAAAACCCTTTGAGACTATGACTCATA
TACCCGTTTTTCAAACAGAATTCTGCTGTTAAAAGCCATAATTACCTCTA
ACTCTCTCAATATAACAACAACGAAAAATTTatggaaaatataaaaagaa
aattggtgGAATTTTCACTGGTCTACTTGAAATTATTAATTGTTTACAAA
AGGGACTTGATGATACATGTTTATGTTGACGGAGCTTAAAAAATGATCAA
CGGGTTTTATATATTTgtgtttttatactttttttttctttgctagATAT
AATACTTGCTATCcaagtaaaatatatttttaggtcAAACAAAAGATAAC
AAAATTTCTTGATGTAAGTTCTTCCCTTTGAATAAAGTCAATTCTGC Run BLAST on NCBI transcript from alignment at scaffold_320:80202..84003+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059225 ID=TCONS_00059225|Name=TCONS_00059225|organism=Clytia hemisphaerica|type=transcript|length=3802bp|location=Sequence derived from alignment at scaffold_320:80202..84003+ (Clytia hemisphaerica)
GAAAAAGGATCTAGCAGCTGCGCTGATGTAAACAAAACTAGCCCGtgatc
gtttttttttaataatcatTACGTGATTTTCGGCACAcggtaaattttac
tttagaaCACATGCCTTTAGAACGACGAAGTGACGAAGGGAACGGAGAGC
AAAGGCACGTGGTTTACACttagaaatcaaataaaatacaaattttgact
taaacacACCACAAAATCTACAATGGTAAGCCATTTTCTTTCGTAGTTTG
TAGAGAAGAGAACTAGTGCACTATTGGTAGATGATAGAGCAGTTACATAA
ATCACTTTTTCAGtgctttgaaaatttatttctaGTAGTATATAGTAGTT
GTGCAAACTTGTATCtTATTCTTGTATCTgatttatttcaattatttgaC
ATGGTTgactagacaggagacccgtcctgtatttttataatcttatgTAT
ACAGGACAggtatgacctgtgaggcagatttctgcctcaaaaaattttaC
ACCATTTACAGTGGGATATTCAAATTAAACCTGCCtcaggcggcaatcac
aaatatcttcatttcgcgtccttgttgggtctaaaaagtgagtcagtcGT
TCATAAAAAATTTCGGGTTTTCTTACCTCCTATCTGTCTAGGCCGCCCGC
GTGAGCCCTAATAGTTTTTCTTTCGCGACATTCTGGTGGAAAACTATATT
CTTCAAAGGAAGAATGCGAAGAACTTGCCAAAAAAAAACCCTAGACAAAA
AGATTCTTTCGAGGTTGGGAATTGAtcctgcgaagatgaaaaaattttga
ctagggttttttttggcaaacccaaaaactctaatttttttcttctctca
agctaaaaaggttacaGGTTTTGGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNttagaatttcaaaagaagacA
TTATACATTTGGTATCTCTTTCTCTTGTGTGGACATGCAAAATGAAGACC
Ttgcattgtttgaaattttttccattctaacacttttgtttttttttgta
ttgtaGTGTGTGCGTGCGGGTGTGTGATATGTGATAAAGTTTGTTTATTG
AAATGAATGACAAATAAAGAACGCAGCTATTTTCATGTggtgtttacaat
tttcttaagtCAGAATTGTCTTCtactcacttttttcaaaataacagtTT
CCtttcttgttaaaattttttattaaaaattttattttcttattaaaagt
tCTGATAGGTTAGTTCTATTgttctttaacttttatttttctagttTATT
TTGCTAGCTTTTTAATAAGCTTTGTGATAGTTTTAGTTTTAAATTCTGAA
GAGTTCagatttttaagcataaattaaaattttttttcaaattttggtgg
gGGCTAAATCTCAGGCATTTCAATGGATCTATTTTAGTGTGGTTTCTTTT
GCGAAGATTCTGATGAGGTGTAGTTGAGCTGACCAATCTTTCAGAGTCCA
GACTCAAGGACCCCCCCTctctaaaaaaaaactaaattttacaagTGTGC
TTTACAAGTAAGTGTGCAGAAGTGTGCACCAAATATGAAttggcatcttt
ggtgaaaTTTTTGGACCCACAAGGAATTTTCAACCCATAAGCATTGATGC
TCCACAAACCCACATGGTTTCTTTTGGACCCACGAGACattttgacccac
gaacccacaaGCAATTTAAACCCCATACATACGTAATTTAGCACACTCCA
GTGAAGAgtgaattttggttgatttaaaaaaaaattgtttactgACATGT
GTTTTTATTCTTGCTTGGGGAATGTTGTGGAGAAAATCACAccgtttcaa
ttgttttttacaAATCAATGAGTTCCCTTTCTCATAATAAGGAAGCATTC
GATATGGGAtcagatttttaaaagataTGTTTTTGGGCAAACTATTGTGG
CCCCCTAGGTCATGAGATCTGACTATTAGGTCTAGTTTAAAAGATTTAAA
TGTTCACAATTTTATCTTTTAAGTCGACTCATCTGATTCTCCAGATATAA
GTTTGCCTCTACAATTCAAGTATAAAATTGTCTGGTAGATGACATCtttt
taatttctattttattttatttctaatgtttctattttttctGAAAGGTT
GACGAAGAGATAAACCCAAAAGCTTACCCCTTGGCTGATGCTACCCTAAC
TGTCACTATTCTTGACTTGATTCAACAAGCTGCAAACTACAAGCAACTCT
TGAAAGGAGCAAACGAGTCAACAAAAGCATTGAATCGTGGTATAGCAGAA
TTCATTGTGATGGCTGCTGATGCAGAACCCTTGGAAATCCTTTTGCATTT
ACCTTTGCTGTGTGAAGATAAGGTAAATTTGTTAAAGTTTATCCAGGTTT
ATCGTTACTTTGCCTTTTAAGAAACTTGCGTATTGTTTTGCACTAAGGAG
TGGTAACTTTCCAGAAACGTCGTTTTCCAATATTGGTTGTCTTTTGAGAA
ATAATCATTATGCACCTTGGTAAGCTcctcgaaaattaaaaatggctGCT
GATAGTAATATATGGCTATTAAGTAATACAAActgttttttaataatttt
tgtaGAATGTACCTTACGTTTTCGTGAAGTCGAAACAAGCTTTGGGTCGT
GCCACCGGTGTCTCCCGACCAGTCATTGCATGCGCAGTCACCATTAACGA
AGGCTCACAACTGAAAAGTCAAATCCAATCCTTACAAAACGCCATCGAGA
AGCTTCTTCTTTAAACAGGAGTGTTAGCCGAGTTATTCATACATGTACGT
CCTTTCCTCGATCGCTTATCGTGTATCTTAACAGGATGTTGCTTGGTGGT
TAGCTAATGAGAGGGGTTGATCGAGAGGTACAGCTTTTTTACAGTATGTT
TCTCTGTTTCCAGTAAGCAAacctgtaaaaatattttcccgttCAAAGTC
ATTCTAAATCTTAAGTTATCGAAAAATTCCTTtagggaaaatatttttaa
ggatGTGCCTTCTGAAATGGGGTAAGGTTTTAGTCAGGGTTTTTCTCTAA
AAGAGGTTGCTGTTTTCACAGCATGCTATCAGTTGTCACCAGTTTAAACT
CGAGACATTTCCTTGCGTCATTCCTCTCTTTTTCCGCCCTATTGGTGTTT
TTTCTACTGCATTTGTTGTCTTATTTGtctcctcgttttcaaaatactgT
TTCGACTTATATCCTAAATAAGTTTTAGAAAAACCCTTTGAGACTATGAC
TCATATACCCGTTTTTCAAACAGAATTCTGCTGTTAAAAGCCATAATTAC
CTCTAACTCTCTCAATATAACAACAACGAAAAATTTatggaaaatataaa
aagaaaattggtgGAATTTTCACTGGTCTACTTGAAATTATTAATTGTTT
ACAAAAGGGACTTGATGATACATGTTTATGTTGACGGAGCTTAAAAAATG
ATCAACGGGTTTTATATATTTgtgtttttatactttttttttctttgcta
gATATAATACTTGCTATCcaagtaaaatatatttttaggtcAAACAAAAG
ATAACAAAATTTCTTGATGTAAGTTCTTCCCTTTGAATAAAGTCAATTCT
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059225-exon-scaffold_320-1491911889:80202..80426 | TCONS_00059225-exon-scaffold_320-1491911889:80202..80426 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1510915933:80202..80426 | TCONS_00059225-exon-scaffold_320-1510915933:80202..80426 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1575043694:80202..80426 | TCONS_00059225-exon-scaffold_320-1575043694:80202..80426 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1491911889:82549..82773 | TCONS_00059225-exon-scaffold_320-1491911889:82549..82773 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1510915933:82549..82773 | TCONS_00059225-exon-scaffold_320-1510915933:82549..82773 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1575043694:82549..82773 | TCONS_00059225-exon-scaffold_320-1575043694:82549..82773 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1491911889:83007..84003 | TCONS_00059225-exon-scaffold_320-1491911889:83007..84003 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1510915933:83007..84003 | TCONS_00059225-exon-scaffold_320-1510915933:83007..84003 | Clytia hemisphaerica | exon |
| TCONS_00059225-exon-scaffold_320-1575043694:83007..84003 | TCONS_00059225-exon-scaffold_320-1575043694:83007..84003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:80202..84003 + |
Blast
BLAST of TCONS_00059225 vs. Swiss-Prot (Human)
Match: NH2L1 (NHP2-like protein 1 OS=Homo sapiens GN=SNU13 PE=1 SV=3) HSP 1 Score: 172.555 bits (436), Expect = 3.909e-51 Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 1
Query: 223 MVDEEINPKAYPLADATLTVTILDLIQQAANYKQLLKGANESTKALNRGIAEFIVMAADAXXXXXXXXXXXXCEDKNVPYVFVKSKQALGRATGVSRPVIACAVTINEGSQLKSQIQSLQNAIEKLLL 606
M + ++NPKAYPLADA LT +LDL+QQ+ NYKQL KGANE+TK LNRGI+EFIVMAADAEPLEI+LHLPLLCEDKNVPYVFV+SKQALGRA GVSRPVIAC+VTI EGSQLK QIQS+Q +IE+LL+
Sbjct: 1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
The following BLAST results are available for this feature:
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