TCONS_00059234 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059234
Unique NameTCONS_00059234
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059234 ID=TCONS_00059234|Name=TCONS_00059234|organism=Clytia hemisphaerica|type=transcript|length=2058bp
ttccagttaaaagaattgaaaaaagtaaataaagtaaaaaagattgaaat
tacAACACTAAATGGAAGATTCAGAATTGCTCGAAGATTTGAAATGTGGG
ATTTGCTTGGAGTTACTGGTGGACCCAACTTCATTATCTTGTGGACACAC
AGTTTGCCGCTATTGTCTTGCTCAATGGTGGGTTAAATCCAGGAAGCGTA
TCTGTCCTCAATGTCGCCAGCAATGGTCAGGATTTCCAAAAGTTAATGTT
ACACTAAGAAATACCATCGTATCTCTATACAAATCACAGTCCAAGGAAAA
ACTAGACTCACTGAAAAGTGATCCTACATATGATGATATAATGAATAAGT
TTGAATTGTTgggaaatgttgaaaatagaaacTCCAGGAATAATAACAGC
AGATTCTCGTGGACTGGATTTTGCATATTGTTTGCAATAGCAGTTGGCCT
TGTTGTGATTGTTTCTCTTGGCTTCAAAAACATGGGTGGGTTGTCCAAAG
AAAGTTTGAAATCAAAAGCTCTTGAACATTGGACTGTGCATGATGTTGGC
TTTTGGGTTGGAACTCTTGGTGATTGGGCTTctgtttatcaaaataattt
tgttaatGCAGGCATCAATGGAGACCTTTTGGGATTATTTTCAAACCATG
CAGAATTGGAGGATCCAAAAATTAACATGACTGTCAAAATACATCAAACC
AAATTCCTGAACGAATTGAAAATTCTAAAGGAAACATTACCTGCTTCCTC
TTTTGATATTTGGAGCTACAAGGAACGGAAGAATGAAATGGCAATGTTTA
TAATGCTTGGTGTGCGAGAATTTCCACGTGCAACTGTTGTATATTTATAC
CTGTTCAACTATTGGGATACTTTCCTACCCTTTTTTTCTGCATGTGTTAA
ACACGAGGAAGACTATACTACTAAACAACTCATCGATTTGAGCAACACTA
TTGGACCTCACGAGTGGTCATCATGCATGCTTTCTTTATGACTCTAACTG
AATTTGCAAAGTATCCTGGTATTGTTTCATCACGTGATGCAAGACGGGTG
CACATCAAAGCGTTGAAATACTTTGGTTTCGTCCTCATCTCatcattttt
cttcaaaatcttcTGGTCTTTCATTCCAATGTTCATTGCTGATTGTATCT
TCTACTGGATGTTGTATGTCAGCCCATTTGATGCTGCTAATAGGCTCATA
AAAAGGATGTTCAGAGCACGAAGAGTTGAAGATCATGCAGCAAGTGATGA
GCAGGTGGTGGATGATACAGGAACTGAAGTTCATCAACACCAACACCAAC
ACCAtcaccaacaacaacaacaacaacaacaacaacaacaacaacaacaa
caacaagctgGCGGTAGTCGTGGATGGCATTTCAATTTCCACTGGAGCTC
CCATGATCATTAAAAGTCTTTAGACTTATAACTTGATGTTATAAAAACAC
CACAGAAAGGCATTGGTTCCTTTCCCGTTTCTTGCCCATAACACGTCGAA
ACAATGTTGCCTGTCTTTGTAGCTAATATTACGTGtcttgttttaaaaaa
ttcataacTTTGGACTTTTTTTCGCATAATACAACCTCAGGGTCTTGCTT
GTTAATTTTCTTCAGCCTATAAATAtggttttttatttcattatctGGCA
CGAAGACGAAGGTTTGATTGCAACACTTCACACCattatccattgttttc
aagtttaGTATTTTTTAACCGCGGTTTTGTAACAAGATGTTTATGGGAGC
GCAAACAGTCCTGATAGCCCTTAATTCATTTCGACCTCGATACCACCTAT
ATGTGGTATTTGGTTCTTTATGAGATGGACCAAAATTTTTAACGACATAA
TTTTTAATTAGTTGTTAGATCACCAAAAAACGAAATTATAATTGGAATAg
attaaattttattattgtAATATTTGAAAgagtcttttattttttattaa
aaaattagaCTGATTATTTTACCTCTTATTTACATAGATGATACACTGTA
AGATATTTATATGtaattttaaatgtttcttgaaaagaaaattttatttc
tctCTGCT
Run BLAST on NCBI

transcript from alignment at scaffold_320:44927..50404-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059234 ID=TCONS_00059234|Name=TCONS_00059234|organism=Clytia hemisphaerica|type=transcript|length=5478bp|location=Sequence derived from alignment at scaffold_320:44927..50404- (Clytia hemisphaerica)
TTCCAGTTAAAAGAATTGAAAAAAGTAAATAAAGTAAAAAAGATTGAAAT TACAACACTAAATGGAAGATTCAGAATTGCTCGAAGATTTGAAATGTGGG ATTTGCTTGGAGTTACTGGTGGACCCAACTTCATTATCTTGTGGACACAC AGTTTGCCGCTATTGTCTTGCTCAATGGTGGGTTAAATCCAGGAAGCGTA TCTGTCCTCAATGTCGCCAGCAATGGTCAGGATTTCCAAAAGTTAATGTT ACACTAAGGTGTGTCAATTATTTCGTGAAATATTGCTTGTGAACTGTTTT AAGTGTCTCTTTGAGTCGTTGAGAAATTTTGATGTTCAGCCTTGCTTTTC CGCTGTTCTCCCAGTGACGACACTTATGTGTTAATGTATACATTATATGG TTAAGTCCCAAAGTATCAGTAATCCTGTCAACTTTTCTGACATTAACTGA ATGTTGATAATTGACAGGCAACTGGAGAACTAATTTTGATCTACCTTATT ACAGCAAAATAAGTAGACACATGATTGGCGGCCTTGAAATTAGCATGCAA AAAATTTTATTTGCTTTTTCAAGGACACCACTGCTGGTTTTCATTAAAAG AGTTTTAATTAACACAAAATTTCTTAATTCACGTTAATTCCTTGTCTATT ATTTTTGTGTAATAAGTTATTTATAAAAAGCTGAGTAGGCAATGTAATAG AACATGCATTAGTTTAAGTCTTTTGATTGCCTTTTAGAAATACCATCGTA TCTCTATACAAATCACAGTCCAAGGAAAAACTAGACTCACTGAAAAGTGA TCCTACATATGATGATATAATGAATAAGTTTGAATTGTTGGGAAATGTTG AAAATAGAAACTCCAGGAATAATAACAGCAGATTCTCGTGGACTGGATTT TGCATATTGTTTGCAATAGCAGTTGGCCTTGTTGTGGTTAGTGAACAAGC TAATGGCTTATTTTACTAATTAATTTATCACTTGATAGAAAAACCCCTAT TGAAGCTCCCTTTCAAAATTCTTTGAATCCGTACTTTAACTCTCCAGACA GCTTTTTTAAAAAGGATTTTGAGATTTTTCTGTTCTCTATACAAATCAGT ATATTTTTAATCAAGAATGATGTTAATGTGAAATTTGAATTAATATTCTC GGTATAATTGATAATCTTCACTTACTTTGTATTTTTGCCAATCTTTTTGA TACAACTTTGTTTATTCAGATTGTTTCTCTTGGCTTCAAAAACATGGGTG GGTTGTCCAAAGAAAGTTTGAAATCAAAAGCTCTTGAACATTGGACTGTG CATGATGTTGGCTTTTGGGTTGGAACTCTTGGTGATTGGGCTTCTGTTTA TCAAAATAATTTTGTTAATGCAGGTAGTTAAATTGCTTTTATTTCACATA AGGACATTGGTTTGATACCCTACTTTCCTTTGGGTCACATATCATTATTT ACCAGCCTTGTTTGTCCCTCTTTTAATAACTTATCAGATAATAAAAGTTT AGACACCCTTCCCAATAATCTGGTCAGTTCAATACAGATTTCAAAGTTGT ATTTTACAGGCATCAATGGAGACCTTTTGGGATTATTTTCAAACCATGCA GAATTGGAGGATCCAAAAATTAACATGACTGTCAAAATACATCAAACCAA ATTCCTGAACGAATTGAAAATTCTAAAGGAAACATTACCTGCTTCCTCTT TTGATATTTGGAGCTACAAGGTGAGAGTATGACCATTTTTGGCAAACAAC TTTAAACACCTAGAGAAATCACCAGCTTTAAGGCTTGTCTCAACTTGCGC GCGCTGCGATCGCACTTTTTCGAGCAAAGCACGCTATTGGTCAAAAGAAA AACAAAGCAATTCCATTAGCGCGATCTAACGTAACGGTTGAAAAAAGTTG AAATGTGTTCAACTTTTTTTCGAGTACGCGCTACATTTTTATAACATAAT CCTTTTTCCAAGCAAAAAGGATTGAAGCCAAAAAGTGTGATTGCAGCGCG CGCAGGTGGATACCGGCCTTTATACTCAGAATATACTCATACGAAAAAAT TCCTTCGTTTCATCAATTTTTTGCTTCTGAAATATATTGTGCAATGAAAT GATTAAAGTCACTTTCTTGGAAAGAAATGATAAGATTTACTCTGATTAGT AGTTGAAGTTTATCACTATCAGCTCACTAACTCACATCTTTAATCTTCTC ATGCTTAATCTTATTGTATCAAAAAAAAACTTACTATGATTTTTCACCTT GTTGTAGGAACGGAAGAATGAAATGGCAATGTTTATAATGCTTGGTGTGC GAGAATTTCCACGTGCAACTGTTGTATATTTATACCTGTTCAACTATTGG GATACTTTCCTACCCTTTTTTTCTGCATGTGTTAAACACGAGGAAGACTA TACTACTAAACAACTCATCGATTTGGTAAGTGCAACGTAAGAACAAACTA TATAAGAACATATCTCTTTAATAGCCAAAATATTAAGAACAAGTTAAGAA TATTTTAAGACTTTGTGGACTCTTAAACACTCGATTGGTGCTTCTTTTTT GACAGCCTTTTTCTTCATGGATTTTTCCACTTACCCTTTTTACTTATCGA ACATTGAGTACCATTTTTGAAGCATTAATTGGGATTGAATCCACAACACT GTGCACCAATGAAGTATAATCCCGAAGAGCTAGAATCAAATCTTTAACCT TTCTCAGGCAAGAAAAAGTGAAGCCTTTAAAAATATGCGCCGTATTTTTG ATGACGGATTGAATCTAACGATTCCTTTGTTTTCGAGTGTTATTATTTTC GAAATTTATGTGTAAGTTTTAGTTTCAATCTGTCGTTTTTGTAAAAAAAA ATAGACAGACCGCGCTAGACCGCGCAACTTTGTTTCGATTTGGTTGGCTT CAAATCCTACCAAGGAGATTCGATTCTAGCTCTTTGGGATTATACTTCAT TGCTGTGCACCTCCTGCCTTTAAGATTTCTGCCTTATTCCTTCAAGCTAA GAAGTTACCTCTTTTTGTACGCACTAAAAAAGTTGTCTTTTTAATATTAA AGGATGAGAACCCAACTGTAAACCAATGGTTGGAGTTTATACCTTGGCTC ATTATTGCGCCTTATGGTTTGATCGCCAAATTTGCATACAACTTTTTAGA GCAACACTATTGGACCTCACGAGTGGTCATCATGCATGCTTTCTTTATGA CTCTAACTGAATTTGCAAAGTATCCTGGTATTGTTTCATCACGTGATGCA AGGTTTGATTATTTTACCCATTGTTGGTGTCCCTTTAGAGAACACACAAT AAAAGCCTTTTTATAATATTGACTGGAGGCTCAAGGAATGCAGATTTTTT GTTGTGACTTTTGTGATTTTAAGACAGTATTTTATAATAAGAAATATTTT AATTTTATCTTCATTTTATTTCAGACGGGTGCACATCAAAGCGTTGAAAT ACTTTGGTTTCGTCCTCATCTCATCATTTTTCTTCAAAATCTTCTGGTCT TTCATTCCAATGTTCATTGCTGATTGTATCTTCTACTGGATGTTGTATGT CAGCCCATTTGATGCTGCTAATAGGCTCATAAAAAGGTATTGCTGTAACT CGGTCTAATGTCGACATCCCTCTTCTAATCCCGACACTCTTCTTTAGAGA TAGGAATAGTAGAAAGATCGGAATCCACTTATGGGAACTATATTTCTTTG CTTAGCGACCGGAGAGGAAAAAATCTTTTGTCTATCAGTGATTCTGACCT TACTATTGTTCCCATCTCTAAAACTGGGTGTCAGAATTAGAAGAGGGATG TTGACAGTAGACTAGGCTGCACGCATCCCCTCTGATATGATTTGATATAG GGGATGCGTATCGTCTAAGATATTACTGTCCCAGCTTACCCCCGTCTTTT CTTTTCTCTTTTTTGATTATGTGTCACAGCTGTACAACGACTTCTCTTTT TCTTTGTTTAATGAATGAAAATTTATAATTATNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTCT TTCTGTGATTGGATGTAACAAAATTATGTAAATTTATGCAACTTTCGGTT ACCCCAAATTTGAGGTAACTCTCGGACGAGAATTTCATACACGTTACGCA TCCCCTATAACAAAATAAATTCTGGGGATGCGTGCAGCCTAACAGTAGAC TAACTTACGATAGTGGTCACAAAGTATCTGTGGTCAGGTAGCTCATTTGG TAAAGCATTCGCCTTGCAACCCAAGGGTTGTGTTGTACATCATGCTCATT TATACATGCGCATAAATGCGAGTTTAGACTCCCCTGTTTGTTTGGTTAGA AATTTAAATAACGTTTTTTTGTTTCTGTTAATATTATTGTTGTTGTTCTC TGTTGAAAATGACCACTACTGGGAGCTTTTCTTTTGCTGCTTTATAAACC TACTGACTTCTTCAGAGTATGTATAAACTCGTAACGTATTATCGTACATT GTAATGTTTTTATTTTAATCAAAAGGATGTTCAGAGCACGAAGAGTTGAA GATCATGCAGCAAGTGATGAGCAGGTGGTGGATGATACAGGAACTGAAGT TCATCAACACCAACACCAACACCATCACCAACAACAACAACAACAACAAC AACAACAACAACAACAACAACAACAAGCTGGCGGTAGTCGTGGATGGCAT TTCAATTTCCACTGGAGCTCCCATGATCATTAAAAGTCTTTAGACTTATA ACTTGATGTTATAAAAACACCACAGAAAGGCATTGGTTCCTTTCCCGTTT CTTGCCCATAACACGTCGAAACAATGTTGCCTGTCTTTGTAGCTAATATT ACGTGTCTTGTTTTAAAAAATTCATAACTTTGGACTTTTTTTCGCATAAT ACAACCTCAGGGTCTTGCTTGTTAATTTTCTTCAGCCTATAAATATGGTT TTTTATTTCATTATCTGGCACGAAGACGAAGGTTTGATTGCAACACTTCA CACCATTATCCATTGTTTTCAAGTTTAGTATTTTTTAACCGCGGTTTTGT AACAAGATGTTTATGGGAGCGCAAACAGTCCTGATAGCCCTTAATTCATT TCGACCTCGATACCACCTATATGTGGTATTTGGTTCTTTATGAGATGGAC CAAAATTTTTAACGACATAATTTTTAATTAGTTGTTAGATCACCAAAAAA CGAAATTATAATTGGAATAGATTAAATTTTATTATTGTAATATTTGAAAG AGTCTTTTATTTTTTATTAAAAAATTAGACTGATTATTTTACCTCTTATT TACATAGATGATACACTGTAAGATATTTATATGTAATTTTAAATGTTTCT TGAAAAGAAAATTTTATTTCTCTCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037305XLOC_037305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059234-exon-scaffold_320-1575043694:50147..50404TCONS_00059234-exon-scaffold_320-1575043694:50147..50404Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:49469..49667TCONS_00059234-exon-scaffold_320-1575043694:49469..49667Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:49032..49185TCONS_00059234-exon-scaffold_320-1575043694:49032..49185Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:48685..48845TCONS_00059234-exon-scaffold_320-1575043694:48685..48845Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:47980..48147TCONS_00059234-exon-scaffold_320-1575043694:47980..48147Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:47153..47255TCONS_00059234-exon-scaffold_320-1575043694:47153..47255Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:46819..46980TCONS_00059234-exon-scaffold_320-1575043694:46819..46980Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1575043694:44927..45779TCONS_00059234-exon-scaffold_320-1575043694:44927..45779Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:50147..50404TCONS_00059234-exon-scaffold_320-1510915933:50147..50404Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:49469..49667TCONS_00059234-exon-scaffold_320-1510915933:49469..49667Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:49032..49185TCONS_00059234-exon-scaffold_320-1510915933:49032..49185Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:48685..48845TCONS_00059234-exon-scaffold_320-1510915933:48685..48845Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:47980..48147TCONS_00059234-exon-scaffold_320-1510915933:47980..48147Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:47153..47255TCONS_00059234-exon-scaffold_320-1510915933:47153..47255Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:46819..46980TCONS_00059234-exon-scaffold_320-1510915933:46819..46980Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1510915933:44927..45779TCONS_00059234-exon-scaffold_320-1510915933:44927..45779Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:50147..50404TCONS_00059234-exon-scaffold_320-1491911889:50147..50404Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:49469..49667TCONS_00059234-exon-scaffold_320-1491911889:49469..49667Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:49032..49185TCONS_00059234-exon-scaffold_320-1491911889:49032..49185Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:48685..48845TCONS_00059234-exon-scaffold_320-1491911889:48685..48845Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:47980..48147TCONS_00059234-exon-scaffold_320-1491911889:47980..48147Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:47153..47255TCONS_00059234-exon-scaffold_320-1491911889:47153..47255Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:46819..46980TCONS_00059234-exon-scaffold_320-1491911889:46819..46980Clytia hemisphaericaexon
TCONS_00059234-exon-scaffold_320-1491911889:44927..45779TCONS_00059234-exon-scaffold_320-1491911889:44927..45779Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:44927..50404 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (4.68886 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26978 2.5389 0 0.863557 4.28981 2.88401 2.04775 2.66023 1.53264 0.47223 3.95089 0.644805 1.15602 1.2245 0.47219 0.351076 0.806422 1.45569 0.690707 0.96845 0.771467 2.06717 4.68886 1.37201 1.51508 3.94501 1.63802 0 3.6872 4.47727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
200400600800100012001400160018002000Expect = 5.84e-50 / Id = 29.86Expect = 5.84e-50 / Id = 29.86SequenceBFAR
Match NameE-valueIdentityDescription
BFAR5.838e-5029.86Bifunctional apoptosis regulator OS=Homo sapiens G... [more]
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