TCONS_00059238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059238
Unique NameTCONS_00059238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059238 ID=TCONS_00059238|Name=TCONS_00059238|organism=Clytia hemisphaerica|type=transcript|length=1997bp
CTCCAATGAAACTCAACtgctatcaaaacaaaatggaaatTGGTTTAGAA
TTCGATCACCTATCACGTCACTCCTTACCTTATATCGTCAAATTTCATGG
TGATAATAACTGCCCAACATTAAATGCATCTTCAGCATCTTCAATATACG
ATGGACGTCTATGGATGAATGCAAATTACAGTGAATGTGGTATCAAAGCT
TTTGAGAGCGGAAACAAACTAGTGTTCAAACAAATCGTTGAAGTTGTGTa
cggaaaacaaatgaaatcttTAGATGTTTATCGACATTTTATTGATACTT
ATAACGCTTCTTGTTCGATTGATCGAAATGTTACACATAAATTAAACATC
GATGTTAAAGAACAGGAGACTCTCGACGATGAAACAGAGGAGAACGccga
tttcaaattcaaatttagtGCTTTCAAAGACGATAAAACAGCGATCAGTG
GTTTGGTCTTTCTTGGAGATTTAATCCATTTCGAATTGGAGTTACTTTCC
AACTCTAAAGTTGTGAAAACGTCTCCTCAAGATTGTTTTGCTACACGTTT
GGATGGAACAGGACGCTACGATCTTATTAAAGATAGATGTGTAGGTGATG
ATGAAACACTCGCGATCACATCGTCCAATCAACAAACACACATGTTCTCG
TGGGAAATGGAAGCTTTCAGATATTTTGGAAATTCTGACGGTATTGTAAT
CACCTGTCGAGTTTTGGTTTGTCGAAATAATCCTTTTGATCAACTGACAG
ATGAATGTAAGAGATGTGGACAAACTACCGTCAGACGAAAACGAAGaaat
gatgaagatgaagaggAGAAAGATGTTTTGAGCGAAACTTCGCTGAAGAG
TGATCCCATTTTCCTTGTTGAAAGACCAGGTATAGGTAAAGGCCTTGCCA
AAGTATCTGGCGATGAAGCAGGTCTCGATCACACTGAAAAGATGGCAATC
ATTGTCGTTTGTGGTGTTGTTGCTTTGGTTCTTTGTGTTGCCATCGTCAA
AAAGGTTTTCTTCAAAAGTGGAATGCCAGAAAAACCTGTTGTTGGATAAA
GAAACACTTTCTTGCAGCCNTTTTTCTTCAAACCTCAAAGTGGAATGCCA
GAAAAACCTGTTGTTGGATAAAAAACACTTTCTTGCAGCCTACCATCTGA
TAGATGGtgtataatttaattttttgcgtTAATAAGGGATAACCAGATGG
CAGATAGTTTCAGATGTATTGTCGAGAAATGACTATTTGAAACTGTTGTT
ACATTAGAAAACCTCCTTCTCACAAACTCattgggaccccttcccactgg
aaaattggctAAATTATCATCccaagtggaaaattatcctttaacttttg
tccccactgaaaaaaagtcaaataaaccaatcgcctctgcaaaatattat
gctattttttccatccccagtGAATTTTTTGGCTCGAAAACgatggaatt
taaatccccaacAATAACATGAGAATGTCGGATCCTCCGTCGAGTTTAAG
TCCGttttttttacccccactggctaaTAAATCCTACCGGTCCTGGAGAA
GGTGAAAAGGGGATGTGTTACAATTCTACTGTTTTCttgctaaaattaaa
aaaaattgtaacttgaatgttttgattttgtaaaagagtttggcaaaaac
attttataaagttttgctCAGGACTGTGGAAGGCAGAAGATCTGAAACCA
TCTGAGATATCCCTATAATGTTTATGTATGTAAGATTAAGTAATCGAGGT
GTCTTTATCTAACTATGTCAAGTTTTGTTTGCTGATCAATAAATCCGAAT
TTACTCTAGATTAAACATTCTAGATCTAAGCATTTTTTATATGTGCCTGT
AAGATTCTCCGTACCAATTAGAAAATTAgtaatctcaaaatttattttta
aatgaacTAAACTAATTTTTGTATTAAACTTTGTGTATTGAACCATAACT
TTTAGTCAAGATGATGTATGagaaaaatttccttttaaagttgaata
Run BLAST on NCBI

transcript from alignment at scaffold_320:130709..134781-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059238 ID=TCONS_00059238|Name=TCONS_00059238|organism=Clytia hemisphaerica|type=transcript|length=4073bp|location=Sequence derived from alignment at scaffold_320:130709..134781- (Clytia hemisphaerica)
CTCCAATGAAACTCAACTGCTATCAAAACAAAATGGAAATTGGTTTAGAA
TTCGATCACCTATCACGTCACTCCTTACCTTATATCGTCAAATTTCATGG
TGATAATAACTGCCCAACATTAAATGCATCTTCAGCATCTTCAATATACG
ATGGACGTCTATGGATGAATGCAAATTACAGTGAATGTGGTATCAAAGCT
TTTGAGAGCGGAAACAAACTAGTGTTCAAACAAATCGTTGAAGTTGTGTA
CGGAAAACAAATGAAATCTTTAGATGTTTATCGACATTTTATTGATACTT
ATAACGCTTCTTGTTCGATTGATCGAAATGTTACACATAAATTAAACATC
GATGTTAAAGAACAGGAGACTCTCGACGATGAAACAGGTAGGCACTTTAC
CTGTAGCACACAACGTTGTTTTAACGTCCATCTAATGTTTACAACGTCCA
TATAACGTTAGATGAATACAACAACGTCGGGCGCCATCCGGGTTTCTATA
CTTGTGATGCATATTTATTTTTAATGTATGTTTTTATGAGGCCCTCCAAG
CGGTTTTCTTGATGTCGTACTAGAGACTTTCTTCTGGCGAGGAAACAGGT
AGGTACTTTACAGGGGGGTTTCATGGTTGACGGAGGAGTGGAATCGGCCC
TTTTTCGAACGGAGTGGCGGAATTTGACGAAAATTTTGACGGAATTTCGG
AAATTGAATCTGCTGACGGAGATGGAAAATTAGACAATTTTAGTGTTGAA
AAACGGAATTTAGCAAATGTTTTTGCAGTTTTTCGGAATTATGGCTAAAG
ATATTTGAATCACGCAGAATTTTTTACAAAGAAAGCTTGAACTTCAAAGG
AATCTTTGATGGTGGAGTTCTTATTTTCACCCTGAAAATTGTAAAAAATC
ACCAAAAGTCGTCCCTTTCCAGATACACATCTTGAAAATTAGTAAAATTT
GGGACCCTACCAGATATCTTCAGAGCCTAAAAAAGGGATCCTGACTAGCA
ACATATCCCCCCGTACCCAATTATGCTTACCTTTTCTGAAGGTGAATGGT
AAAATACGATGGCTTTTTTACGGAAAAACTTAATGAAGAACTAACTCGGC
AAAAAGTACTCTAGGGGTTCACGACTTGGCGAAAATAAAGTTGATTCAAT
AATACAGTGGGACTTCCAATTTGCGGACACCACGGGGAAAAGGGTGGTTA
GTGTCTGCTATAGTGTCCACTAATAAGTACATATTTCAAACTTTTTTTTT
ATTCAACAGAGGAGAACGCCGATTTCAAATTCAAATTTAGTGCTTTCAAA
GACGATAAAACAGCGATCAGTGGTTTGGTCTTTCTTGGAGATTTAATCCA
TTTCGAATTGGAGTTACTTTCCAACTCTAAAGTTGTGAAAACGTCTCCTC
AAGATTGTTTTGCTACACGTTTGGATGGAACAGGACGCTACGATCTTATT
AAAGATAGGTAAACATATATTTATTAGTCAGCCCCGGTGACTCTTCAAAT
CGGTTCAACGATTTTTTTCCCGCTAGTTGTCTTCGTCGTCGTTAAGACTT
TCATTTTTAATTCCGATTTCGGATTATTTTCGGGAAACAGGATTTCGGGA
TTATTTAGCGCGCGAAAATAATTTTTTCTTAGCAANTTTCTCAAAAAATT
GTGTGAAGAAAATCTCCATGAAGAAAAACAACAACAATAGGTAGAAAAGG
TAGCTAAGAAATGCTATGTTCAGTTTCAAAACCTTCGCGAGTGTTTTGCC
TTAATTTCTTTTTTAGCGGAAACCTTTACCAACTTTAATAACCTTAAAAT
CATTTAGACGATGCTATAGTCTGTTAAAGGGATAGTTTATCGGCGGTAAA
ATGTATATGTGTGGAGTTTTCAACCGTAATGTCAGTATACGGAAAAATTG
GCGATAGAGTTTTGAAAAAATGTCAAGCTCTACCGGCTGTAAACTATTTT
CGCCGCAAAAAAATATCTGTTTGCTTTGGCTTTGGTTTTATTTCTTAGTT
AGTGATTTGAAATCATTCAATACACCTTTTCTAACGTAGCCGCCAATTGC
CACGTGAGCATTGTTTTGTCCGTTTTACCACCCTAAAACCGTTCCAGTCT
TTTTTTCGCACCTATAAGACAATAGAAAAAAACCAGCTGGCACACAACGT
TGTTTAAACGTTAATCTAACGTTCACAACGTCCATTTAACGTTAGATTAA
CGTTAAAACAACGTTGTATGCCAGCTGGGAAGTGTAAAAAAAAGGATTAG
ATCGAGTTTAGGGTCGTAAATCAAATAATAAAGTGGCAAGTGTCTGACCG
CGCGACTACGGTCGAAGAGGTGTATTGGCCAAATATTCTTATCATTTTTT
TAGATGTGTAGGTGATGATGAAACACTCGCGATCACATCGTCCAATCAAC
AAACACACATGTTCTCGTGGGAAATGGAAGCTTTCAGATATTTTGGAAAT
TCTGACGGTATTGTAATCACCTGTCGAGTTTTGGTTTGTCGAAATAATCC
TTTTGATCAACTGACAGATGAATGTAAGAGATGTGGACAAACTACCGTCA
GACGAAAACGAAGAAATGATGAAGATGAAGAGGAGAAAGATGTTTTGAGC
GAAACTTCGCTGAAGAGTGATCCCATTTTCCTTGTTGAAAGACCAGGTAT
AGGTATGTCGCTCTCTCTCTCATTATTTCTCTTCTTACATGTTGTAAATT
GTCGATTTGAGTGATACTTCATTTCCTGTATTAAGTTTCCACTGACTTTT
CTGAGATTTTTCCGCTAAATAATGTTTTCAAGGCAGTTGTTGCACTCATA
ATGATTTATGAAAAGGCCCAATGTCATTATTAAATCTGTCATAATTTAAA
TACGTACTATGTACTTATCGTGCCTTTTACTGATGCATATTTCGTGACTG
TTCCCCAGCTCCCGGACTATAACTTTAGTCAACTCTGATGTTATTGTTTT
ATTTATTCTACACAAAGGCCTTGCCAAAGTATCTGGCGATGAAGCAGGTC
TCGATCACACTGAAAAGATGGCAATCATTGTCGTTTGTGGTGTTGTTGCT
TTGGTTCTTTGTGTTGCCATCGTCAAAAAGGTTTTCTTCAAAAGTGGAAT
GCCAGAAAAACCTGTTGTTGGATAAAGAAACACTTTCTTGCAGCCNTTTT
TCTTCAAACCTCAAAGTGGAATGCCAGAAAAACCTGTTGTTGGATAAAAA
ACACTTTCTTGCAGCCTACCATCTGATAGATGGTGTATAATTTAATTTTT
TGCGTTAATAAGGGATAACCAGATGGCAGATAGTTTCAGATGTATTGTCG
AGAAATGACTATTTGAAACTGTTGTTACATTAGAAAACCTCCTTCTCACA
AACTCATTGGGACCCCTTCCCACTGGAAAATTGGCTAAATTATCATCCCA
AGTGGAAAATTATCCTTTAACTTTTGTCCCCACTGAAAAAAAGTCAAATA
AACCAATCGCCTCTGCAAAATATTATGCTATTTTTTCCATCCCCAGTGAA
TTTTTTGGCTCGAAAACGATGGAATTTAAATCCCCAACAATAACATGAGA
ATGTCGGATCCTCCGTCGAGTTTAAGTCCGTTTTTTTTACCCCCACTGGC
TAATAAATCCTACCGGTCCTGGAGAAGGTGAAAAGGGGATGTGTTACAAT
TCTACTGTTTTCTTGCTAAAATTAAAAAAAATTGTAACTTGAATGTTTTG
ATTTTGTAAAAGAGTTTGGCAAAAACATTTTATAAAGTTTTGCTCAGGAC
TGTGGAAGGCAGAAGATCTGAAACCATCTGAGATATCCCTATAATGTTTA
TGTATGTAAGATTAAGTAATCGAGGTGTCTTTATCTAACTATGTCAAGTT
TTGTTTGCTGATCAATAAATCCGAATTTACTCTAGATTAAACATTCTAGA
TCTAAGCATTTTTTATATGTGCCTGTAAGATTCTCCGTACCAATTAGAAA
ATTAGTAATCTCAAAATTTATTTTTAAATGAACTAAACTAATTTTTGTAT
TAAACTTTGTGTATTGAACCATAACTTTTAGTCAAGATGATGTATGAGAA
AAATTTCCTTTTAAAGTTGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037308XLOC_037308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059238-exon-scaffold_320-1575043694:134395..134781TCONS_00059238-exon-scaffold_320-1575043694:134395..134781Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1575043694:133324..133522TCONS_00059238-exon-scaffold_320-1575043694:133324..133522Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1575043694:132128..132428TCONS_00059238-exon-scaffold_320-1575043694:132128..132428Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1575043694:130709..131818TCONS_00059238-exon-scaffold_320-1575043694:130709..131818Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1510915933:134395..134781TCONS_00059238-exon-scaffold_320-1510915933:134395..134781Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1510915933:133324..133522TCONS_00059238-exon-scaffold_320-1510915933:133324..133522Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1510915933:132128..132428TCONS_00059238-exon-scaffold_320-1510915933:132128..132428Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1510915933:130709..131818TCONS_00059238-exon-scaffold_320-1510915933:130709..131818Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1491911889:134395..134781TCONS_00059238-exon-scaffold_320-1491911889:134395..134781Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1491911889:133324..133522TCONS_00059238-exon-scaffold_320-1491911889:133324..133522Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1491911889:132128..132428TCONS_00059238-exon-scaffold_320-1491911889:132128..132428Clytia hemisphaericaexon
TCONS_00059238-exon-scaffold_320-1491911889:130709..131818TCONS_00059238-exon-scaffold_320-1491911889:130709..131818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:130709..134781 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.412219	0	0	0	0	0.0120912	0	0	0.105862	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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