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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059242 ID=TCONS_00059242|Name=TCONS_00059242|organism=Clytia hemisphaerica|type=transcript|length=2070bp
gactaCATGGTTGCTCAAAGAATTTGGGTCTGCATCGAGTTGGCttgtgt
tggaaatgttcatgacttgcaaataagatggagaaactgttggcaaaata
caaataagaaaaaaaacaaaatatttttttcattttgtcttatttatacc
GTGATTAATAAATTaatgaacaaaaagtttaaatcctgaagcttacaata
tctcgacaaaacTGTATACTTTtattggtgcacccggtatttcggtattt
caTGTTTGTACCTGTACCAAGCtaactgaaaatttaagaagatTAAGAAT
GACTCTCGCTTGGAAATGAAGTTAACAGTTACAATTACCAGCATAATACC
TTTCTTTCCCTTGCCTATTTCAGACAACTTGGCACCTGTGTTTCGACCAA
CAGAACCTATCAAAGTTTTTAAAGACCAAGAAATGAGCTTCGTTATCCCC
GTATTTGATCCTGAACAGAAGAAGATGAAATATGAGTTGATAGAACCACC
ATCGCCACCACCGGGTATGGAGATCTCCAATGGTGGAGTACTGACATGGA
CACccaaagaagaaaacaaaacgtTCACAGTATGGATCAAAGTTACTGAC
ATTTGTGGCAACAGTTCGTATTCTACATATGATTTTGAGGTTGTTAATTG
TCCTTGTCAAGCTTTCAATGGTGCAGAATGCCAAAGAAGTGATAATGGAA
CTATTAGCTGTGTTTGCCCTGCTGGATGTACCGGAAAAAAGTACGAAAAA
AGGCTTGATCACTAATAGTTTGCTCTTAATAACTCGAAAGTAAAAGTTCA
TGAGTTTGCTTAGTTTGAATGGACCTTATCagagttttcttgattttttc
taaaacagcgatgcattgtgggattgtttcaggagtattacaatagaaat
ctcttaggaattcctcgagggaattctattgtaataccccggaaacaatc
ccacaatgcattaccgttaaagaaaatcaaaatacccgaacttgatttct
tttatttcactgaagattTGAAGCTTTGAGTATGAAAATAACTGAAAccg
tttttttaatcaaactagTGGAACTGTTAAATTTTTATATTCACGGCACC
TGTCTGCAAGGGTAACCCTGCTTACAAAGacttacagtcaactctctcta
attcgaacctctattattcgaatttttctgtaattcgaactaaaagaTTG
GTCTCTAAAGCTgtaaagtggtttaaattactctctattattagaatctt
tctctaattcgatcaaAGTTTTtgatcccttgaagatcgatttagagaga
atcaactgtacttataaagtcaaaaattcttcaACTATTAGCTTTGTGCG
AAAAACTTCTCTTTACACACCACCGTGCCACAGATCCGGTGGACCCCCAG
CCTCACATGTAAATAATACCCTAGGATTTAAACCCCACTGGATAATTAAA
GTATGAtttatccccattcgaaattggGCGGCAAAAACTACACTCCAAAA
CCAAAACCACCCCCGTTTTTCTTTTTGAGCTAGAAACNTAAACAAAAAAG
TAAGGAAAAActgtctttttgattttctaaaagtcCATTTTGGCTTAAag
tttagttaaaataatttgGTAGTCCAGTTGGcaacgacgttgtttcaacg
tctatctaacgttatatagacgttatgaacattagataaacgttgaaaca
acgttgtgtgtcagctggtaGGCCActcttagaccatgttcagacgttac
ggtttcgttTCGCTCCGGTTTGGTATTTGTTACGGATAGAAAGTGTTCAT
ACTCATTTCGGAACATTTTGGAACAACAAAACGGAGCAGTTctgttccga
tgaaaatagtagAGCAAAactgtttctaactgttttgctttgtaacgtct
tcttttttgacgttttcaattttgacgttCAAGGAACGAATCGTCCATAC
AGGATTCGAAGCTAATCAATTcctatttaagggctctgaccatagtccaa
aaatagattttggtatttgaacataaaagttatatttcaggttccttaac
acttttaacaaagaattgcc Run BLAST on NCBI transcript from alignment at scaffold_320:137462..139859- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059242 ID=TCONS_00059242|Name=TCONS_00059242|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at scaffold_320:137462..139859- (Clytia hemisphaerica)
GACTACATGGTTGCTCAAAGAATTTGGGTCTGCATCGAGTTGGCTTGTGT
TGGAAATGTTCATGACTTGCAAATAAGATGGAGAAACTGTTGGCAAAATA
CAAATAAGAAAAAAAACAAAATATTTTTTTCATTTTGTCTTATTTATACC
GTGATTAATAAATTAATGAACAAAAAGTTTAAATCCTGAAGCTTACAATA
TCTCGACAAAACTGTATACTTTTATTGGTGCACCCGGTATTTCGGTATTT
CATGTTTGTACCTGTACCAAGCTAACTGAAAATTTAAGAAGATTAAGAAT
GACTCTCGCTTGGAAATGAAGTTAACAGTTACAATTACCAGCATAATACC
TTTCTTTCCCTTGCCTATTTCAGACAACTTGGCACCTGTGTTTCGACCAA
CAGAACCTATCAAAGTTTTTAAAGACCAAGAAATGAGCTTCGTTATCCCC
GTATTTGATCCTGAACAGAAGAAGATGAAATATGAGTTGATAGAACCACC
ATCGCCACCACCGGGTATGGAGATCTCCAATGGTGGAGTACTGACATGGA
CACCCAAAGAAGAAAACAAAACGTTCACAGGTAACCTTCAGTGTGCCAAA
TAGGTCCTTTTTACGCAGGACCTTATGACGGTTTTCCGTCTCTGTTTGGT
ACAAAAGGAGACTTTATCATCTCCAAATTCAACAAAAATTTTCATTGCCA
AGTTCATTAACATCTTGAGACAAAAAACTTTGACCATTGAATTAAATGTC
TTAAAGCCAACAGTAACATTATTTTACTTCCCAAAACCAGCGAGTTTATT
TCAAGCAAATATTCTTATAACATTAAATGATAATATACTTGACTCATCTG
AAAAGTTATATGGACCTCATTTACAAATCCTAACTAAAATTTCCTCTTTT
TTTCCCAGTATGGATCAAAGTTACTGACATTTGTGGCAACAGTTCGTATT
CTACATATGATTTTGAGGTTGTTAATTGTCCTTGTCAAGCTTTCAATGGT
GCAGAATGCCAAAGAAGTGATAATGGAACTATTAGCTGTGTTTGCCCTGC
TGGATGTACCGGAAAAAAGTACGAAAAAAGGCTTGATCACTAATAGTTTG
CTCTTAATAACTCGAAAGTAAAAGTTCATGAGTTTGCTTAGTTTGAATGG
ACCTTATCAGAGTTTTCTTGATTTTTTCTAAAACAGCGATGCATTGTGGG
ATTGTTTCAGGAGTATTACAATAGAAATCTCTTAGGAATTCCTCGAGGGA
ATTCTATTGTAATACCCCGGAAACAATCCCACAATGCATTACCGTTAAAG
AAAATCAAAATACCCGAACTTGATTTCTTTTATTTCACTGAAGATTTGAA
GCTTTGAGTATGAAAATAACTGAAACCGTTTTTTTAATCAAACTAGTGGA
ACTGTTAAATTTTTATATTCACGGCACCTGTCTGCAAGGGTAACCCTGCT
TACAAAGACTTACAGTCAACTCTCTCTAATTCGAACCTCTATTATTCGAA
TTTTTCTGTAATTCGAACTAAAAGATTGGTCTCTAAAGCTGTAAAGTGGT
TTAAATTACTCTCTATTATTAGAATCTTTCTCTAATTCGATCAAAGTTTT
TGATCCCTTGAAGATCGATTTAGAGAGAATCAACTGTACTTATAAAGTCA
AAAATTCTTCAACTATTAGCTTTGTGCGAAAAACTTCTCTTTACACACCA
CCGTGCCACAGATCCGGTGGACCCCCAGCCTCACATGTAAATAATACCCT
AGGATTTAAACCCCACTGGATAATTAAAGTATGATTTATCCCCATTCGAA
ATTGGGCGGCAAAAACTACACTCCAAAACCAAAACCACCCCCGTTTTTCT
TTTTGAGCTAGAAACNTAAACAAAAAAGTAAGGAAAAACTGTCTTTTTGA
TTTTCTAAAAGTCCATTTTGGCTTAAAGTTTAGTTAAAATAATTTGGTAG
TCCAGTTGGCAACGACGTTGTTTCAACGTCTATCTAACGTTATATAGACG
TTATGAACATTAGATAAACGTTGAAACAACGTTGTGTGTCAGCTGGTAGG
CCACTCTTAGACCATGTTCAGACGTTACGGTTTCGTTTCGCTCCGGTTTG
GTATTTGTTACGGATAGAAAGTGTTCATACTCATTTCGGAACATTTTGGA
ACAACAAAACGGAGCAGTTCTGTTCCGATGAAAATAGTAGAGCAAAACTG
TTTCTAACTGTTTTGCTTTGTAACGTCTTCTTTTTTGACGTTTTCAATTT
TGACGTTCAAGGAACGAATCGTCCATACAGGATTCGAAGCTAATCAATTC
CTATTTAAGGGCTCTGACCATAGTCCAAAAATAGATTTTGGTATTTGAAC
ATAAAAGTTATATTTCAGGTTCCTTAACACTTTTAACAAAGAATTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059242-exon-scaffold_320-1575043694:139280..139859 | TCONS_00059242-exon-scaffold_320-1575043694:139280..139859 | Clytia hemisphaerica | exon |
| TCONS_00059242-exon-scaffold_320-1575043694:137462..138951 | TCONS_00059242-exon-scaffold_320-1575043694:137462..138951 | Clytia hemisphaerica | exon |
| TCONS_00059242-exon-scaffold_320-1510915933:139280..139859 | TCONS_00059242-exon-scaffold_320-1510915933:139280..139859 | Clytia hemisphaerica | exon |
| TCONS_00059242-exon-scaffold_320-1510915933:137462..138951 | TCONS_00059242-exon-scaffold_320-1510915933:137462..138951 | Clytia hemisphaerica | exon |
| TCONS_00059242-exon-scaffold_320-1491911889:139280..139859 | TCONS_00059242-exon-scaffold_320-1491911889:139280..139859 | Clytia hemisphaerica | exon |
| TCONS_00059242-exon-scaffold_320-1491911889:137462..138951 | TCONS_00059242-exon-scaffold_320-1491911889:137462..138951 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_320 | supercontig | scaffold_320:137462..139859 - |
Blast
The following BLAST results are available for this feature:
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