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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059270 ID=TCONS_00059270|Name=TCONS_00059270|organism=Clytia hemisphaerica|type=transcript|length=674bp
AAAGTTacagtattaatcatttttcaaattaaaatgtCTTCGAgtcgcca
tgacagttgtcctttgcggacaaagctcgTCCATCAATTGCTTTCTGAAA
CATTGTCAATACAATGCCTCGTGatcaaataaaattcaaatataaACGTC
GATGCGAACCCTGACCCTTAAAGGTTCTTAAATtgactttttggaaaaat
attcttcgatttttgaaaattcactttCCAAGATCTTTTTGGATACTTTA
ATCAGAatccttttgttttgttttctaaagGATATGGTGTGTTTgctaaa
gaaaacattgcaaagGGAGAGTTTATCTGTGAATACAGAGGTGAACAAAT
AGACAAACAAGAAGGCATGAGAAGATTGGCGGACCCAAACGTGAAAGGGT
CATTCGTTTATTTCCATGACACTGGATGCGACAGAAAAGAGACTGATCGT
AGATGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCA
AGAAAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTT
ATTCGCAATGTAAGTTTATACCTTTTTATTGGgttctaaattttttattt
tacatgcCCTGTACGAGGCCTTAGCCCACGATATTTATCCATTAATTAGT
ATTTTCTTGCATAATCTGTCAAAT Run BLAST on NCBI transcript from alignment at scaffold_322:49..1946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059270 ID=TCONS_00059270|Name=TCONS_00059270|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at scaffold_322:49..1946+ (Clytia hemisphaerica)
AAAGTTacagtattaatcatttttcaaattaaaatgtCTTCGAgtcgcca
tgacagttgtcctttgcggacaaagctcgTCCATCAATTGCTTTCTGAAA
CATTGTCAATACAATGCCTCGTGatcaaataaaattcaaatataaACGTC
GATGCGAACCCTGACCCTTAAAGGTTCTTAAATtgactttttggaaaaat
attcttcgatttttgaaaattcactttCCAAGATCTTTTTGGATACTTTA
ATCAGAatccttttgttttgttttctaaagGATATGGTGTGTTTgctaaa
gaaaacattgcaaagGGAGAGTTTATCTGTGAATACAGAGGTGAACAAAT
AGACAAACAAGAAGGCATGAGAAGATTGGCGGACCCAAACGTGAAAGGGT
CATTCGTTTATTTCCATGACACTGGATGGTAACAATCTTTTTCTTATTAA
ATATCTTTACTTTGAAAATGGGTTACTTTGTCAAAAAAGGCTCCATTACA
CATATTGGTTTTGAGAGTATTTAGANTCTTTACTTTGAAAATGGGTTACT
TTGTCAAAAAAGGCTCCATTACACATATTGGTTTTGAGAGTATTTAGAAA
TTTGTGCTTAAAACGTCAATAATAACAAcggttttttaaaaactttgtaG
CTACAGCTATTGACTTTAAAGCCCCGAAGGCGCTAGAAGTGAATCTTTAA
TCTAATATGGGCaagaaaaagtggaaaattaAAATGTGCACcacattttt
gatgacggattgaatctagttgttttttatttgtttttgagtggTAACTA
TTTCGAAATCTGGCGTTGAAAACCAAACCAAGCCGGATTCTTTTTCAAGA
ATGATGAATGGAGGACCTTCCAGAATCCAACAGTAccagacaatttcaaa
aaatacaagaaaaaacataacccgaagatcagcatccttcttagttttta
aataaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTTTTGTTTATTCGCATCACGATTGGAATTTCAAAAGAAT
CCCATTGTTTTGATGCCTTTGAGAAAGCCATTCAATCGAGTCTTGATGTG
ATGAATTTAATTTTATCGCCCCATGTTAAAAGCCCCGTCTTAACTTATCc
acaaaatgaaagaaatttccaAATGTTGAGTTAGTAGCAAGATATGAAAC
CTAAAAATGACCTTTGTAAACAAcgccaaaattcacttttggaatttaga
ttttttcttatTACTGTTACTTTATTTGGTCTTTTCAGATCGCTCAAAAA
GAAGGTCATATATCCGCCGTAAGATCACTAAAGTCAAGGATGCAATGACC
AAAGCATTGAGGGAAAAAGCCATGATTCACGCAATGGAGGACTGCTTCAA
TGGGAAATTTCCTTGGAAGTCAATTGACGAGATGTCTTCAAATGGAATTT
CTGGTAAGATTAAGATACATAATGActgattttcattgaaaaatttctCA
TTGCTTTTTATTGTAATAGATCAAATCTCATCCGATTTCTAGAATCTCAG
GTATATACATATAAACacttttaacttaaatttttaaactttttcactAC
AGCGACAGAAAAGAGACTGATCGTAGATGCTTTTATGAGATGGCGGCGAT
GTGAGGAAGAGAAGACGATCCTCAAGAAAGACatggaaaactttttaaaa
tttaatcgTAATCGAGTAAAAGTTATTCGCAATGTAAGTTTATACCTTTT
TATTGGgttctaaattttttattttacatgcCCTGTACGAGGCCTTAGCC
CACGATATTTATCCATTAATTAGTATTTTCTTGCATAATCTGTCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059270-exon-scaffold_322-1491911889:49..476 | TCONS_00059270-exon-scaffold_322-1491911889:49..476 | Clytia hemisphaerica | exon |
| TCONS_00059270-exon-scaffold_322-1510915933:49..476 | TCONS_00059270-exon-scaffold_322-1510915933:49..476 | Clytia hemisphaerica | exon |
| TCONS_00059270-exon-scaffold_322-1575043694:49..476 | TCONS_00059270-exon-scaffold_322-1575043694:49..476 | Clytia hemisphaerica | exon |
| TCONS_00059270-exon-scaffold_322-1491911889:1701..1946 | TCONS_00059270-exon-scaffold_322-1491911889:1701..1946 | Clytia hemisphaerica | exon |
| TCONS_00059270-exon-scaffold_322-1510915933:1701..1946 | TCONS_00059270-exon-scaffold_322-1510915933:1701..1946 | Clytia hemisphaerica | exon |
| TCONS_00059270-exon-scaffold_322-1575043694:1701..1946 | TCONS_00059270-exon-scaffold_322-1575043694:1701..1946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_322 | supercontig | scaffold_322:49..1946 + |
Blast
The following BLAST results are available for this feature:
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