Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=transcript|length=472bp aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA CGAGATGTCTTCAAATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAG ATGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAG AAAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTAT TCGCAATGTAAGTTTATACCTTTTTATTGGgttctaaattttttatttta catgcCCTGTACGAGGCCTTAGCCCACGATATTTATCCATTAATTAGTAT TTTCTTGCATAATCTGTCAAAT Run BLAST on NCBI protein sequence of TCONS_00059271-protein >TCONS_00059271-protein ID=TCONS_00059271-protein|Name=TCONS_00059271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
KIHFWNLDFFLLLLLYLVFSDRSKRRSYIRRKITKVKDAMTKALREKAMI HAMEDCFNGKFPWKSIDEMSSNGISATEKRLIVDAFMRWRRCEEEKTILK KDMENFLKFNRNRVKVIRNVSLYLFIGF Run BLAST on NCBI transcript from alignment at scaffold_322:1326..1946+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at scaffold_322:1326..1946+ (Clytia hemisphaerica) aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT
GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA
CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT
CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA
CGAGATGTCTTCAAATGGAATTTCTGGTAAGATTAAGATACATAATGAct
gattttcattgaaaaatttctCATTGCTTTTTATTGTAATAGATCAAATC
TCATCCGATTTCTAGAATCTCAGGTATATACATATAAACacttttaactt
aaatttttaaactttttcactACAGCGACAGAAAAGAGACTGATCGTAGA
TGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAGA
AAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTATT
CGCAATGTAAGTTTATACCTTTTTATTGGgttctaaattttttattttac
atgcCCTGTACGAGGCCTTAGCCCACGATATTTATCCATTAATTAGTATT
TTCTTGCATAATCTGTCAAAT Coding sequence (CDS) from alignment at scaffold_322:1326..1946+ >TCONS_00059271 ID=TCONS_00059271|Name=TCONS_00059271|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_322:1326..1946+ (Clytia hemisphaerica) aaaattcacttttggaatttagattttttcttatTACTGTTACTTTATTT GGTCTTTTCAGATCGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCA CTAAAGTCAAGGATGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATT CACGCAATGGAGGACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGA CGAGATGTCTTCAAATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAG ATGCTTTTATGAGATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAG AAAGACatggaaaactttttaaaatttaatcgTAATCGAGTAAAAGTTAT TCGCAATGTAAGTTTATACCTTTTTATTGGgttctaaaaaattcactttt ggaatttagattttttcttatTACTGTTACTTTATTTGGTCTTTTCAGAT CGCTCAAAAAGAAGGTCATATATCCGCCGTAAGATCACTAAAGTCAAGGA TGCAATGACCAAAGCATTGAGGGAAAAAGCCATGATTCACGCAATGGAGG ACTGCTTCAATGGGAAATTTCCTTGGAAGTCAATTGACGAGATGTCTTCA AATGGAATTTCTGCGACAGAAAAGAGACTGATCGTAGATGCTTTTATGAG ATGGCGGCGATGTGAGGAAGAGAAGACGATCCTCAAGAAAGACatggaaa actttttaaaatttaatcgTAATCGAGTAAAAGTTATTCGCAATGTAAGT TTATACCTTTTTATTGGgttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059271-exon-scaffold_322-1491911889:1326..1551 | TCONS_00059271-exon-scaffold_322-1491911889:1326..1551 | Clytia hemisphaerica | exon |
TCONS_00059271-exon-scaffold_322-1510915933:1326..1551 | TCONS_00059271-exon-scaffold_322-1510915933:1326..1551 | Clytia hemisphaerica | exon |
TCONS_00059271-exon-scaffold_322-1575043694:1326..1551 | TCONS_00059271-exon-scaffold_322-1575043694:1326..1551 | Clytia hemisphaerica | exon |
TCONS_00059271-exon-scaffold_322-1491911889:1701..1946 | TCONS_00059271-exon-scaffold_322-1491911889:1701..1946 | Clytia hemisphaerica | exon |
TCONS_00059271-exon-scaffold_322-1510915933:1701..1946 | TCONS_00059271-exon-scaffold_322-1510915933:1701..1946 | Clytia hemisphaerica | exon |
TCONS_00059271-exon-scaffold_322-1575043694:1701..1946 | TCONS_00059271-exon-scaffold_322-1575043694:1701..1946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_322 | supercontig | scaffold_322:1326..1946 + |
Blast
The following BLAST results are available for this feature:
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