TCONS_00059279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059279
Unique NameTCONS_00059279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059279 ID=TCONS_00059279|Name=TCONS_00059279|organism=Clytia hemisphaerica|type=transcript|length=741bp
ATTAAGAAGCTTATCAAAGTGGTCACCGAATTCTTTGGAAATGTCGATTT
TGGTAGATTTGCCATTGATTGTGTATAATTTTTGTTGCTATTTCTTAATT
AAATTTATTTGAGCCCAGTATGAAGATGGATTTAAGTTTTTGAGCTTTTC
AACATTATCATAGTGTTCAACAGTTGCTTGGTGCTTTGTGCGTTTAACAA
GTGTTCTAAATATTTTACGTGAGAATTTGCAGCGGTTGTAAGAGATGTCT
GAATCATTTCTAGGGAAGTTGTTTTCCCGCCAAATGTTATAGTGTAACTG
TAAATTTTTCTTAGCTTCAGTTAATTCTTTGTTCCACCAGGGTTTAGCTG
GAAATTCGTAGAAATCTTGTCTAAATGTTTCGTAGCAGTCGGATGCTGAT
GAAAGTAGGATATTTTGTAGTTTATCAAGCATNATGGTTTCAGTGTCAAT
TTCATTGTTGGCTTTAGTAAtgctttttgaaactttttctctGTATGAAT
TCACTATTTCTCCACATATGAGTCGGTATATAGTCATTAGTCGGAGCGTC
TGCTACAATTCAGTGGTACGATCGTTTGTAATAGGTGGTGGGCTTGAAGT
CAATTTGACATTCAAGGCATCTGGTTCGGGGATGTGTGAGTCAACAAGTA
GATCTAGTAACGATTGCGATATAAGAACATGGTCTATATACGATTTGTTG
GTATTTGGTGGTGTAGTCCTCTGTGTGGTCGGCTCATTGGG
Run BLAST on NCBI

protein sequence of TCONS_00059279-protein

>TCONS_00059279-protein ID=TCONS_00059279-protein|Name=TCONS_00059279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MTIYRLICGEIVNSYREKVSKSITKANNEIDTETXMLDKLQNILLSSASD
CYETFRQDFYEFPAKPWWNKELTEAKKNLQLHYNIWRENNFPRNDSDISY
NRCKFSRKIFRTLVKRTKHQATVEHYDNVEKLKNLNPSSYWAQINLIKK
Run BLAST on NCBI

transcript from alignment at scaffold_323:3004..3744

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059279 ID=TCONS_00059279|Name=TCONS_00059279|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at scaffold_323:3004..3744 (Clytia hemisphaerica)
CCCAATGAGCCGACCACACAGAGGACTACACCACCAAATACCAACAAATC
GTATATAGACCATGTTCTTATATCGCAATCGTTACTAGATCTACTTGTTG
ACTCACACATCCCCGAACCAGATGCCTTGAATGTCAAATTGACTTCAAGC
CCACCACCTATTACAAACGATCGTACCACTGAATTGTAGCAGACGCTCCG
ACTAATGACTATATACCGACTCATATGTGGAGAAATAGTGAATTCATACa
gagaaaaagtttcaaaaagcaTTACTAAAGCCAACAATGAAATTGACACT
GAAACCATNATGCTTGATAAACTACAAAATATCCTACTTTCATCAGCATC
CGACTGCTACGAAACATTTAGACAAGATTTCTACGAATTTCCAGCTAAAC
CCTGGTGGAACAAAGAATTAACTGAAGCTAAGAAAAATTTACAGTTACAC
TATAACATTTGGCGGGAAAACAACTTCCCTAGAAATGATTCAGACATCTC
TTACAACCGCTGCAAATTCTCACGTAAAATATTTAGAACACTTGTTAAAC
GCACAAAGCACCAAGCAACTGTTGAACACTATGATAATGTTGAAAAGCTC
AAAAACTTAAATCCATCTTCATACTGGGCTCAAATAAATTTAATTAAGAA
ATAGCAACAAAAATTATACACAATCAATGGCAAATCTACCAAAATCGACA
TTTCCAAAGAATTCGGTGACCACTTTGATAAGCTTCTTAAT

Coding sequence (CDS) from alignment at scaffold_323:3004..3744

>TCONS_00059279 ID=TCONS_00059279|Name=TCONS_00059279|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_323:3004..3744 (Clytia hemisphaerica)
ATGACTATATACCGACTCATATGTGGAGAAATAGTGAATTCATACagaga
aaaagtttcaaaaagcaTTACTAAAGCCAACAATGAAATTGACACTGAAA
CCATNATGCTTGATAAACTACAAAATATCCTACTTTCATCAGCATCCGAC
TGCTACGAAACATTTAGACAAGATTTCTACGAATTTCCAGCTAAACCCTG
GTGGAACAAAGAATTAACTGAAGCTAAGAAAAATTTACAGTTACACTATA
ACATTTGGCGGGAAAACAACTTCCCTAGAAATGATTCAGACATCTCTTAC
AACCGCTGCAAATTCTCACGTAAAATATTTAGAACACTTGTTAAACGCAC
AAAGCACCAAGCAACTGTTGAACACTATGATAATGTTGAAAAGCTCAAAA
ACTTAAATCCATCTTCATACTGGGCTCAAATAAATTTAATTAAGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037325XLOC_037325Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059279-proteinTCONS_00059279-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059279-exon-scaffold_323-1491911889:3004..3744TCONS_00059279-exon-scaffold_323-1491911889:3004..3744Clytia hemisphaericaexon
TCONS_00059279-exon-scaffold_323-1510915933:3004..3744TCONS_00059279-exon-scaffold_323-1510915933:3004..3744Clytia hemisphaericaexon
TCONS_00059279-exon-scaffold_323-1575043694:3004..3744TCONS_00059279-exon-scaffold_323-1575043694:3004..3744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_323supercontigscaffold_323:3004..3744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.466812	0.455216	0.453042	0.738718	0.0899318	0.213196	0.0857373	0.160532	0.112393	0.278433	0	0	0.177407	0	0.189337	0.284462	0.400496	0.359184	0	0	0	0.0943492	0	0.208547	0	0.191702	0	0.329646	0.0740179	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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