TCONS_00059291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059291
Unique NameTCONS_00059291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059291 ID=TCONS_00059291|Name=TCONS_00059291|organism=Clytia hemisphaerica|type=transcript|length=305bp
NCAAATTTATACAAGCACACTTGTTTGATTTGACGTTTTAAGACGGGCGA
AATCTTCTAAAGAACTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATTT
TTTCCGTCCTTTTGAAAATGAGAGTTTTTTATTGGCAAGTTTTAATCCAG
TCATACatattttgtattaaaaaatatacgTAAGCACACTTGTTTGATTT
GACTTTGTAAGACGGGCGAAATCTTAAGTACTATACTACTCTTTAGGATA
TGAGACTTCTTCTACATATTTGAAAGTTCTGTTGCGTAGACTGAATTTAT
ATCTG
Run BLAST on NCBI

transcript from alignment at scaffold_324:29259..29563

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059291 ID=TCONS_00059291|Name=TCONS_00059291|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_324:29259..29563 (Clytia hemisphaerica)
CAGATATAAATTCAGTCTACGCAACAGAACTTTCAAATATGTAGAAGAAG
TCTCATATCCTAAAGAGTAGTATAGTACTTAAGATTTCGCCCGTCTTACA
AAGTCAAATCAAACAAGTGTGCTTAcgtatattttttaatacaaaatatG
TATGACTGGATTAAAACTTGCCAATAAAAAACTCTCATTTTCAAAAGGAC
GGAAAAAATACTAGCACCGAACCGACCCTCCAAAAGGGTAGTTCTTTAGA
AGATTTCGCCCGTCTTAAAACGTCAAATCAAACAAGTGTGCTTGTATAAA
TTTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037335XLOC_037335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059291-exon-scaffold_324-1491911889:29259..29563TCONS_00059291-exon-scaffold_324-1491911889:29259..29563Clytia hemisphaericaexon
TCONS_00059291-exon-scaffold_324-1510915933:29259..29563TCONS_00059291-exon-scaffold_324-1510915933:29259..29563Clytia hemisphaericaexon
TCONS_00059291-exon-scaffold_324-1575043694:29259..29563TCONS_00059291-exon-scaffold_324-1575043694:29259..29563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_324supercontigscaffold_324:29259..29563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.611222	0.32375	0.90797	0.366926	31.0906	25.1346	7.20219	11.1115	9.45796	22.0725	9.28886	6.37633	1.53235	4.45904	2.41523	0.621353	2.04504	1.44562	1.54564	0	0.0100235	0	0	0.494655	0	1.06152	1.34	0	0.747599	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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