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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059303 ID=TCONS_00059303|Name=TCONS_00059303|organism=Clytia hemisphaerica|type=transcript|length=2258bp
TTTCATTAGGTGATATGACTACTATTGTATTTAGTTGGGAGTTTTGTGGA
AACTGACCTTTACTGATCTGTccaagtctctctaagggtatgaaaCCAAG
GAAATTCTAAAATTGTTTTCTAAGGATGGGAAGTCTTTCTAAAATCCGCT
CTCTAAGGGTCGCTGTTTCACCAACTTTGTCTTTctgaacacccctgtct
cagtgacccggtgagaactttttagccagtggggataaaatgaaGGAGCC
AAATAtcaatggggatggaaattcCCTTGCTTTTAATGGATGGGTATTTT
GAATTCTATTACTTACAGCTcagaaatccagtggggattcccaaaatttt
catGCTTTTCCCAGTGGGGATGAGAGTTCAGTGTATTTTTTCGATGagga
tgaaatttcagggtatttttctcACGTATGGCTGTTTTTTGACGGCGGAG
ACGGTTAGTTTTTCATCTTTCTAGATCCTGATCGGTTTGAGGActacggt
aaatcagcactgcAAGACCGTTGCCGTCCTCAAAAGCgtagatacataaa
ctcgctaatataaGCTAGACGGGCTAGAAAAGAATCTCTTATTTAGGATT
AGAAGCCGTCATTTGTACATGTGCCGGATTGTACAAAATTTGccgccaga
tttcgaaaaaaactcaaataattAAACTGCTATATCctatccgtcgtcaa
aaatgtGGCTCAAATTTTTGTTCCAGGTCGGTGACATAGACGACTTTTCA
CTAATTCATAAGATTAAATAGCGCAAATTTAGAAATAACAGATTACAGTG
TTTGCTGTAACTAGGACAATTCAGGGGGTGGACAATTTGATGAGTTTTGA
AGTGCTAAACCATTAACTTTTGTTTCACGagaaatttttataaagtatat
atACTATACTATAAAGATGATTCATAAAATAAAAGCCCTTAAGAGCAAGC
TATGATagcgtcaaataaaaattcAGCATTCGTCCAATTACTCGGTGGCC
ATGGAATGTTCCTAGAAGCTACCACGTGCTCACAATAATCCTTTATGTCA
TCGTCCATTGAGTTTTTGAGTTGAAAGCTAtcaaatatttcatctatttg
gTCAATCCGATTTAAATCATGCTCTCTTGTCACCTGACCACATTCTACAT
AACCGAAAGAATTTGGAATGTTGTATAATTCGTTAGGTACACCACCAATA
ACGTTCTCTCCAGATGACCTTATGCGATGTGTGTTCCAATTCTTTACAAT
GTGGTCAAGATCTTTTTGAATTAAGGGGGAAAACGAAAACCAACAAACTT
CCTCGTATAACTTACTCCCAGTCACAAAAGTGCcgtcatcaatttttctt
ttgaagaagTCAATCACCCATCCACTGTAGGACTTTCTAAGGGATGACCA
CCAACTTTCTATCCTTTGATTGGATACTGATGTACCATACCTATGTGCAC
CAATGGTATTATGAAGTGTACATTGAATAGCAGCAGCAAGTCCGTTTTCT
GTGCCTAAATCTGTGCGCAAAAGTTTTGGAATCATATTAACGTCTTTGAT
AGTATCAAGATAGTAAGCTGCAGGGACACAAGGGTCGTTATTGCTTTTGC
AAACTTTGAGCCACAATATTTTTCTCGAAAAGCCATCGATTGCTCCATGA
ATCGGTAGACCGTACGGTTTAAGTTTATCGTATCCATCAATATGCCAAGT
GTCATTTGGTCCTCTTGAAGTGTACCTTCTTCGTCTCAAAACTCTGGATC
TTCGCTGAACCACCCCTTCAGGATCCAGTTCTTGTAAAAGGTTCATTACT
TTATCACGAGGACATCTGATGTTATACTTTGTCCTTAAAAGGTTCCACAT
ATTCCTATATCCAAGATTAGAGGCAGGTCCTTGGAGTTCCGTTTGCATGA
TTCCACTCAATGTTGCATCGTCTACATTCTGGCTCTTATCAAGCCCATAC
AGTACGAGTCTTCTTTTAAGTGTCCTGACACCAAGATTGACACCGTAATT
TTCAAGTAAACAGACAATGGCCGAATATGTGTGACCATCgtgaaaatact
tttttatcagAGATTCCTCAATATTTTCCCCTTCATTTGGGTTTGGAACA
ATAAATTGATCTCCACAATTTCCACAGAATCTATATTCAACTTCCCTTTG
CGCACCACACGATGGACAAAACATACTATGCCTTTAAACCGTTAAATAAT
TCGGGTGAAGGCACTTGCTTCTTATGGTTTAGTGTCAGGGTATCAATTCT
GTAGTGTA Run BLAST on NCBI protein sequence of TCONS_00059303-protein >TCONS_00059303-protein ID=TCONS_00059303-protein|Name=TCONS_00059303-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp
MFCPSCGAQREVEYRFCGNCGDQFIVPNPNEGENIEESLIKKYFHDGHTY
SAIVCLLENYGVNLGVRTLKRRLVLYGLDKSQNVDDATLSGIMQTELQGP
ASNLGYRNMWNLLRTKYNIRCPRDKVMNLLQELDPEGVVQRRSRVLRRRR
YTSRGPNDTWHIDGYDKLKPYGLPIHGAIDGFSRKILWLKVCKSNNDPCV
PAAYYLDTIKDVNMIPKLLRTDLGTENGLAAAIQCTLHNTIGAHRYGTSV
SNQRIESWWSSLRKSYSGWVIDFFKRKIDDGTFVTGSKLYEEVCWFSFSP
LIQKDLDHIVKNWNTHRIRSSGENVIGGVPNELYNIPNSFGYVECGQVTR
EHDLNRIDQIDEIFDSFQLKNSMDDDIKDYCEHVVASRNIPWPPSNWTNA
EFLFDAIIACS Run BLAST on NCBI transcript from alignment at scaffold_325:15212..17469 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059303 ID=TCONS_00059303|Name=TCONS_00059303|organism=Clytia hemisphaerica|type=transcript|length=2258bp|location=Sequence derived from alignment at scaffold_325:15212..17469 (Clytia hemisphaerica)
TACACTACAGAATTGATACCCTGACACTAAACCATAAGAAGCAAGTGCCT
TCACCCGAATTATTTAACGGTTTAAAGGCATAGTATGTTTTGTCCATCGT
GTGGTGCGCAAAGGGAAGTTGAATATAGATTCTGTGGAAATTGTGGAGAT
CAATTTATTGTTCCAAACCCAAATGAAGGGGAAAATATTGAGGAATCTct
gataaaaaagtattttcacGATGGTCACACATATTCGGCCATTGTCTGTT
TACTTGAAAATTACGGTGTCAATCTTGGTGTCAGGACACTTAAAAGAAGA
CTCGTACTGTATGGGCTTGATAAGAGCCAGAATGTAGACGATGCAACATT
GAGTGGAATCATGCAAACGGAACTCCAAGGACCTGCCTCTAATCTTGGAT
ATAGGAATATGTGGAACCTTTTAAGGACAAAGTATAACATCAGATGTCCT
CGTGATAAAGTAATGAACCTTTTACAAGAACTGGATCCTGAAGGGGTGGT
TCAGCGAAGATCCAGAGTTTTGAGACGAAGAAGGTACACTTCAAGAGGAC
CAAATGACACTTGGCATATTGATGGATACGATAAACTTAAACCGTACGGT
CTACCGATTCATGGAGCAATCGATGGCTTTTCGAGAAAAATATTGTGGCT
CAAAGTTTGCAAAAGCAATAACGACCCTTGTGTCCCTGCAGCTTACTATC
TTGATACTATCAAAGACGTTAATATGATTCCAAAACTTTTGCGCACAGAT
TTAGGCACAGAAAACGGACTTGCTGCTGCTATTCAATGTACACTTCATAA
TACCATTGGTGCACATAGGTATGGTACATCAGTATCCAATCAAAGGATAG
AAAGTTGGTGGTCATCCCTTAGAAAGTCCTACAGTGGATGGGTGATTGAc
ttcttcaaaagaaaaattgatgacgGCACTTTTGTGACTGGGAGTAAGTT
ATACGAGGAAGTTTGTTGGTTTTCGTTTTCCCCCTTAATTCAAAAAGATC
TTGACCACATTGTAAAGAATTGGAACACACATCGCATAAGGTCATCTGGA
GAGAACGTTATTGGTGGTGTACCTAACGAATTATACAACATTCCAAATTC
TTTCGGTTATGTAGAATGTGGTCAGGTGACAAGAGAGCATGATTTAAATC
GGATTGAccaaatagatgaaatatttgaTAGCTTTCAACTCAAAAACTCA
ATGGACGATGACATAAAGGATTATTGTGAGCACGTGGTAGCTTCTAGGAA
CATTCCATGGCCACCGAGTAATTGGACGAATGCTgaatttttatttgacg
ctATCATAGCTTGCTCTTAAGGGCTTTTATTTTATGAATCATCTTTATAG
TATAGTatatatactttataaaaatttctCGTGAAACAAAAGTTAATGGT
TTAGCACTTCAAAACTCATCAAATTGTCCACCCCCTGAATTGTCCTAGTT
ACAGCAAACACTGTAATCTGTTATTTCTAAATTTGCGCTATTTAATCTTA
TGAATTAGTGAAAAGTCGTCTATGTCACCGACCTGGAACAAAAATTTGAG
CCacatttttgacgacggatagGATATAGCAGTTTaattatttgagtttt
tttcgaaatctggcggCAAATTTTGTACAATCCGGCACATGTACAAATGA
CGGCTTCTAATCCTAAATAAGAGATTCTTTTCTAGCCCGTCTAGCttata
ttagcgagtttatgtatctacGCTTTTGAGGACGGCAACGGTCTTgcagt
gctgatttaccgtagTCCTCAAACCGATCAGGATCTAGAAAGATGAAAAA
CTAACCGTCTCCGCCGTCAAAAAACAGCCATACGTgagaaaaataccctg
aaatttcatcctCATCGAAAAAATACACTGAACTCTCATCCCCACTGGGA
AAAGCatgaaaattttgggaatccccactggatttctgAGCTGTAAGTAA
TAGAATTCAAAATACCCATCCATTAAAAGCAAGGgaatttccatccccat
tgaTATTTGGCTCCttcattttatccccactggctaaaaagttctcaccg
ggtcactgagacaggggtgttcagAAAGACAAAGTTGGTGAAACAGCGAC
CCTTAGAGAGCGGATTTTAGAAAGACTTCCCATCCTTAGAAAACAATTTT
AGAATTTCCTTGGtttcatacccttagagagacttggACAGATCAGTAAA
GGTCAGTTTCCACAAAACTCCCAACTAAATACAATAGTAGTCATATCACC
TAATGAAA Coding sequence (CDS) from alignment at scaffold_325:15212..17469 >TCONS_00059303 ID=TCONS_00059303|Name=TCONS_00059303|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at scaffold_325:15212..17469 (Clytia hemisphaerica)
ATGTTTTGTCCATCGTGTGGTGCGCAAAGGGAAGTTGAATATAGATTCTG
TGGAAATTGTGGAGATCAATTTATTGTTCCAAACCCAAATGAAGGGGAAA
ATATTGAGGAATCTctgataaaaaagtattttcacGATGGTCACACATAT
TCGGCCATTGTCTGTTTACTTGAAAATTACGGTGTCAATCTTGGTGTCAG
GACACTTAAAAGAAGACTCGTACTGTATGGGCTTGATAAGAGCCAGAATG
TAGACGATGCAACATTGAGTGGAATCATGCAAACGGAACTCCAAGGACCT
GCCTCTAATCTTGGATATAGGAATATGTGGAACCTTTTAAGGACAAAGTA
TAACATCAGATGTCCTCGTGATAAAGTAATGAACCTTTTACAAGAACTGG
ATCCTGAAGGGGTGGTTCAGCGAAGATCCAGAGTTTTGAGACGAAGAAGG
TACACTTCAAGAGGACCAAATGACACTTGGCATATTGATGGATACGATAA
ACTTAAACCGTACGGTCTACCGATTCATGGAGCAATCGATGGCTTTTCGA
GAAAAATATTGTGGCTCAAAGTTTGCAAAAGCAATAACGACCCTTGTGTC
CCTGCAGCTTACTATCTTGATACTATCAAAGACGTTAATATGATTCCAAA
ACTTTTGCGCACAGATTTAGGCACAGAAAACGGACTTGCTGCTGCTATTC
AATGTACACTTCATAATACCATTGGTGCACATAGGTATGGTACATCAGTA
TCCAATCAAAGGATAGAAAGTTGGTGGTCATCCCTTAGAAAGTCCTACAG
TGGATGGGTGATTGActtcttcaaaagaaaaattgatgacgGCACTTTTG
TGACTGGGAGTAAGTTATACGAGGAAGTTTGTTGGTTTTCGTTTTCCCCC
TTAATTCAAAAAGATCTTGACCACATTGTAAAGAATTGGAACACACATCG
CATAAGGTCATCTGGAGAGAACGTTATTGGTGGTGTACCTAACGAATTAT
ACAACATTCCAAATTCTTTCGGTTATGTAGAATGTGGTCAGGTGACAAGA
GAGCATGATTTAAATCGGATTGAccaaatagatgaaatatttgaTAGCTT
TCAACTCAAAAACTCAATGGACGATGACATAAAGGATTATTGTGAGCACG
TGGTAGCTTCTAGGAACATTCCATGGCCACCGAGTAATTGGACGAATGCT
gaatttttatttgacgctATCATAGCTTGCTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059303-exon-scaffold_325-1491911889:15212..17469 | TCONS_00059303-exon-scaffold_325-1491911889:15212..17469 | Clytia hemisphaerica | exon |
| TCONS_00059303-exon-scaffold_325-1510915933:15212..17469 | TCONS_00059303-exon-scaffold_325-1510915933:15212..17469 | Clytia hemisphaerica | exon |
| TCONS_00059303-exon-scaffold_325-1575043694:15212..17469 | TCONS_00059303-exon-scaffold_325-1575043694:15212..17469 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_325 | supercontig | scaffold_325:15212..17469 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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