TCONS_00059305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059305
Unique NameTCONS_00059305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059305 ID=TCONS_00059305|Name=TCONS_00059305|organism=Clytia hemisphaerica|type=transcript|length=663bp
NAAACCCCCGGAAAcgcgttttgagaaaatcaaagaaaaaggcAAAAGTC
TGCAAAAATGGGTATTATTTTaagttggaaagctcttttcaaaaaatttc
ttcactgacTACTCATCCAACCAGTCAGGTttcaaaagttaaagtaaaac
atttcacaaaaattgataaaatatccaaaaatcaacaaaaacatgttgcA
CTAAAGTCATGTATACATAGCAAAGTTTGCGGTAATCTTGcgataacatc
aaatttgggtgaaaacagCCACATAAGTGTGTCAAAATGTTCATTGAAAG
TCCAGCATAACTCTCTGTAGGCATGAAAACTTTTTGTgtgcatattttta
ttcacatagGCTAGATGACAATGAGCAATGAGCTGGCTTCTTGACCGAAG
GAAGGCTGTTATGAGTGGCGGGTGTCAGATGAAAATGTGCGTCTCCAGAA
GTTAGGAccagttcattataatgcacattttcatctctgttacatcatgt
tgtgcttggaaatatctcagttACATTTAAACCCACTACAAAACATTATG
TGAGCCACCAAAAAACACACACCGCCTATgctcctcaaaacaaaatggcg
gcaacttaaatgtttttcgtAGAAATCCAGCAACATAACCAATGTACAGC
AACTTTATGGCTT
Run BLAST on NCBI

protein sequence of TCONS_00059305-protein

>TCONS_00059305-protein ID=TCONS_00059305-protein|Name=TCONS_00059305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
NPRKRVLRKSKKKAKVCKNGYYFKLESSFQKISSLTTHPTSQVSKVKVKH
FTKIDKISKNQQKHVALKSCIHSKVCGNLAITSNLGENSHISVSKCSLKV
QHNSL
Run BLAST on NCBI

transcript from alignment at scaffold_325:50913..51575

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059305 ID=TCONS_00059305|Name=TCONS_00059305|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at scaffold_325:50913..51575 (Clytia hemisphaerica)
AAGCCATAAAGTTGCTGTACATTGGTTATGTTGCTGGATTTCTacgaaaa
acatttaagttgccgccattttgttttgaggagcATAGGCGGTGTGTGTT
TTTTGGTGGCTCACATAATGTTTTGTAGTGGGTTTAAATGTaactgagat
atttccaagcacaacatgatgtaacagagatgaaaatgtgcattataatg
aactggTCCTAACTTCTGGAGACGCACATTTTCATCTGACACCCGCCACT
CATAACAGCCTTCCTTCGGTCAAGAAGCCAGCTCATTGCTCATTGTCATC
TAGCctatgtgaataaaaatatgcacACAAAAAGTTTTCATGCCTACAGA
GAGTTATGCTGGACTTTCAATGAACATTTTGACACACTTATGTGGctgtt
ttcacccaaatttgatgttatcgCAAGATTACCGCAAACTTTGCTATGTA
TACATGACTTTAGTgcaacatgtttttgttgatttttggatattttatca
atttttgtgaaatgttttactttaacttttgaaACCTGACTGGTTGGATG
AGTAgtcagtgaagaaattttttgaaaagagctttccaacttAAAATAAT
ACCCATTTTTGCAGACTTTTgcctttttctttgattttctcaaaacgcgT
TTCCGGGGGTTTN

Coding sequence (CDS) from alignment at scaffold_325:50913..51575

>TCONS_00059305 ID=TCONS_00059305|Name=TCONS_00059305|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_325:50913..51575 (Clytia hemisphaerica)
CTACAGAGAGTTATGCTGGACTTTCAATGAACATTTTGACACACTTATGT
GGctgttttcacccaaatttgatgttatcgCAAGATTACCGCAAACTTTG
CTATGTATACATGACTTTAGTgcaacatgtttttgttgatttttggatat
tttatcaatttttgtgaaatgttttactttaacttttgaaACCTGACTGG
TTGGATGAGTAgtcagtgaagaaattttttgaaaagagctttccaacttA
AAATAATACCCATTTTTGCAGACTTTTgcctttttctttgattttctcaa
aacgcgTTTCCGGGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037349XLOC_037349Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059305-proteinTCONS_00059305-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059305-exon-scaffold_325-1491911889:50913..51575TCONS_00059305-exon-scaffold_325-1491911889:50913..51575Clytia hemisphaericaexon
TCONS_00059305-exon-scaffold_325-1510915933:50913..51575TCONS_00059305-exon-scaffold_325-1510915933:50913..51575Clytia hemisphaericaexon
TCONS_00059305-exon-scaffold_325-1575043694:50913..51575TCONS_00059305-exon-scaffold_325-1575043694:50913..51575Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_325supercontigscaffold_325:50913..51575 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.29479	5.70062	3.48221	2.09774	36.3425	27.2577	37.4975	39.0931	17.1994	21.4952	32.7366	13.9554	18.3248	15.0993	11.3816	17.2418	10.4439	12.7931	14.7463	19.2794	22.3112	22.4197	21.5548	24.0145	18.0426	24.9356	41.9491	44.2965	64.6892	49.9667
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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