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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059310 ID=TCONS_00059310|Name=TCONS_00059310|organism=Clytia hemisphaerica|type=transcript|length=371bp
aaaaaaaaaaaactaaaccaGTAGcaaataaacattgaaacaaaATGATG
AGTTGATCTTGGTACAATGCTCCAACATTGATGCTTCACACTTGGAATAT
TCTAGCAATTTTCACCGGTTTGTTATTTGGTCTCCAGCGTGTTGTCATGG
CAACAAATATGGTGGATGATAACCAATCGCCCGTGGCTCAACTTGAAAGT
TTCGGTTACAGGTTTGTTGATGGAAAACTACAAGACATCGAGACAAAGGG
ACCTTTCGAATTCAATGTTTACGAAGAGAAAAGTAAAAACCAACGAAGAT
ATGAAAGGATCGGAGAGattATGAATCAGTATGTCTATCATCTGTTGGAG
ATGGAAGGCCAACTCACGCGT Run BLAST on NCBI transcript from alignment at scaffold_326:72973..75916+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059310 ID=TCONS_00059310|Name=TCONS_00059310|organism=Clytia hemisphaerica|type=transcript|length=2944bp|location=Sequence derived from alignment at scaffold_326:72973..75916+ (Clytia hemisphaerica)
aaaaaaaaaaaactaaaccaGTAGcaaataaacattgaaacaaaATGATG
AGTTGATCTTGGTACAATGCTCCAACATTGATGCTTCACACTTGGAATAT
TCTAGCAATTTTCACCGGTAATCCTACATTTTTATAACCTTGAAAgaatt
gaagaaatttttgctggaagaaatttttgcgaaattaaattccgtgtaac
aaaatttaaaaaatcacctatAGAATTAGTGTTTTTGGGGCAATTTTGCC
ATATTTTAAACAGAAATTCCtatcaaccgcgaaattaaattctgtgaAAA
CTTCTTCTTAAGGTATAATGAAAGATAGATAGTGGGTAAAGGGAAGATTC
TTGCTTACATCTATCTTGtgataatgaaatttcttcctAGAATTCAATAT
CTCTCACTACTAGGTCAATAAACATTGATTAGGCCCATcgtcaatatttt
ttcattgactTTCAACAAGTTTTTTATCGATCGTCAAGTTTATATTGACT
GTCAATTGCAAATTATTGACAACAAATTGTTTGCATTGACAACCAATAGT
TCCTTTTTTACAGCCACTGTTTCGTATTGATTGTTAATTATTTTGTTGCC
AGCTGTCAATATAAGTAATGAACAGTCAATGCAAAATTGACTGTAAATAT
TGACGGTCAAtataatttttagttttcaagaaaattgaccGACAGTCAAT
gtataatattttttgtcaatGATTTGTATTTGACAGGCAATAAAACTTGC
TGAGAGTCAATGAATAACATTGAACGTGGACCTAATCAATGTTTCTTGAA
TTCAATTTCTCTGTAGGCTACgccatatcttccttcgtttcgagcgtaaa
acttgtactaagagtaaggcctaaaagcctggagctgtctattgtgtaga
ctaattTCTCTGTTTCTTTAtaggttttgaaaagtttgttgagtaggaag
aaaaaaaacccAATGTTTAAAGTGCAGCGTCTGTGTCAAagaatttttat
acaaaaacaaacaagaagGATAATCGCTTGTGGTACATCTTCACTAGGTT
TGTTATTTGGTCTCCAGCGTGTTGTCATGGCAACAAATATGGTGGATGAT
AACCAATCGCCCGTGGCTCAACTTGAAAGTTTCGGTTACAGGTTTGTTGG
TAAGAACTCTTACGATTTCTGtcggtacacgtttttttataagaacaagc
tatcctttgatggccaaattgttaagaagaagttaagaacattttaagac
ttctTCAACTCAAAAAtactcgatttcttaggaagATGGACAAAATGTTC
ACAAAATGgggaaataagaacaatttgaaaacatttttaggcttacaacT
CAAAAGCTATAAATATCCAAAGGCTTCCAAAATTTTggctgttcttataa
gaaaaacatgtTTGTCTTCTTAAAACCTCGAGCCTTTTTGTAGTCgcgag
cataacttttgattcagaGGTGCCATggtcataaaaaattgaaagacttA
ATTCTAGGGGACGGTAGGTACCCGACGTGTCGTGCCTAGTGTGTAGTATT
TTTTAACGTAGCGTTCATttactacacttttttataagaacgtcaaaaaa
atttgaaatctttaaaTGTTCTTCACTCTTTAAGTTTTGTGgctgaaaat
gttcttacttttactatgttgtgagcatttttgtgtcattttcTTGGAAT
TTTGGTGTTTTAGTGCCCGAAAATCCTGAATTAAATCATTAAAGTTGAGC
CTTACTAAATAATCTCGTTCTTCTAAATTCAGATGGAAAACTACAAGACA
TCGAGACAAAGGGACCTTTCGAATTCAATGTTTACGAAGAGAAAAGTAAA
AACCAACGAAGATATGAAAGGATCGGAGAGGTAATTAGATTAGGCTGAAC
GCATCCTCTCTGAGATGTCTTGATATACTTTAATGGGTTtgattttcgcg
gggattaaatttcgcggttgagctcacccgcgaaattttaagatttcacg
GCGATATAATTTTGCGGATGACTTAATTGTGAgataatattttcacgatt
ttgtgttattttcgccattttactGCCAAATATGTATTTTGGTTGTGGAA
TACGCaatattagcgcttctttgatggtGCTAaacatgttttgaatttta
tccAAAAGAATTTGGCGGAGAACaccttttcaaatttccattgggactta
ttttcgcggatgacacccgcGAAATCTAATTCCCACGAAAATTAATTCCA
TCAATCCCATTGAAGTAAGGGATGCTCAACGTGTATGAAATTCCCGTTCG
AGAGTTACCCCATTTCTCGGGTAAACTGTTTcagttttctttaaaaggtt
taGAAACCCAATGATAGTATTAACctctagccattcaaatttATAATTCA
GATCTAATGAAATTTTAAGATCTCTCAAATGAAACACAAAGACGAGTGGT
AACTCTCGGACAGGAATtgtatacacgatacgcatcccctttatcaaaac
atatcagaggggatgcgtacAGCCTATGCGGAGTTAGGAGTATCCGAAGA
ATAGAAATTTTAGCTGATTGCAATAGCACGTGCATAAAATTTAGtaacat
attttttaaaataagcgagattatgtatctggaattctctacggctacgg
ctaaagtggcgagggaaatgtcgagtaaggcaagtaatggcgggtgaaag
caagttcgatatttgacgtacggcattatgtcgactttgcttggacggtg
ttttggtgtttttcccgtacagagcaaagtagacaacgacatgtcgcctt
tggtgacgacccgtatgggcagccccgcaaccgtagccgtagaatatctc
cgatacataatctcgctatagtttctttcttctttcttagattATGAATC
AGTATGTCTATCATCTGTTGGAGATGGAAGGCCAACTCACGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059310-exon-scaffold_326-1491911889:72973..73089 | TCONS_00059310-exon-scaffold_326-1491911889:72973..73089 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1510915933:72973..73089 | TCONS_00059310-exon-scaffold_326-1510915933:72973..73089 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1575043694:72973..73089 | TCONS_00059310-exon-scaffold_326-1575043694:72973..73089 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1491911889:74020..74121 | TCONS_00059310-exon-scaffold_326-1491911889:74020..74121 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1510915933:74020..74121 | TCONS_00059310-exon-scaffold_326-1510915933:74020..74121 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1575043694:74020..74121 | TCONS_00059310-exon-scaffold_326-1575043694:74020..74121 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1491911889:74755..74852 | TCONS_00059310-exon-scaffold_326-1491911889:74755..74852 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1510915933:74755..74852 | TCONS_00059310-exon-scaffold_326-1510915933:74755..74852 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1575043694:74755..74852 | TCONS_00059310-exon-scaffold_326-1575043694:74755..74852 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1491911889:75863..75916 | TCONS_00059310-exon-scaffold_326-1491911889:75863..75916 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1510915933:75863..75916 | TCONS_00059310-exon-scaffold_326-1510915933:75863..75916 | Clytia hemisphaerica | exon |
| TCONS_00059310-exon-scaffold_326-1575043694:75863..75916 | TCONS_00059310-exon-scaffold_326-1575043694:75863..75916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:72973..75916 + |
Blast
The following BLAST results are available for this feature:
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