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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059311 ID=TCONS_00059311|Name=TCONS_00059311|organism=Clytia hemisphaerica|type=transcript|length=1460bpRun BLAST on NCBI protein sequence of TCONS_00059311-protein >TCONS_00059311-protein ID=TCONS_00059311-protein|Name=TCONS_00059311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp LDASEDDGRGFIFHSEDALKCDRLMIIVHGSGVVRAGQWARRLIINHSLERun BLAST on NCBI transcript from alignment at scaffold_326:76544..93293+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059311 ID=TCONS_00059311|Name=TCONS_00059311|organism=Clytia hemisphaerica|type=transcript|length=16750bp|location=Sequence derived from alignment at scaffold_326:76544..93293+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_326:76544..93293+ >TCONS_00059311 ID=TCONS_00059311|Name=TCONS_00059311|organism=Clytia hemisphaerica|type=CDS|length=13320bp|location=Sequence derived from alignment at scaffold_326:76544..93293+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059311 vs. Swiss-Prot (Human)
Match: F172A (Protein FAM172A OS=Homo sapiens GN=FAM172A PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.971e-51 Identity = 105/260 (40.38%), Postives = 139/260 (53.46%), Query Frame = 2
Query: 2 LDASEDDGRGFIFHSEDALK-CDRLMIIVHGSGVVRAGQWARRLIINHSLESGTQLPYIKKAMELGYGVIVLNSNQHYDEVN--------------------------------------------------DLPIKYNRSPESHFNYVWREIVSKCKAGDIAIVAHSYGGEITVAGATSNR-DLIDRTFAVAFTDSVH--YSSSNDRKIKKWMSKHVCNWVGSQLPLDEKLSTRKGDCVRRSAGTPVHEETSWYAFGSV 619
+DA+E + + FIF SEDAL +LM+++HGSGVVRAGQWARRLIIN L+SGTQ+P+IK+A+ GYGVIVLN N++Y EV L I+ N SPE H YVW +++ A ++ VAHSYGG V D+ ++ AVA TDSVH + + I++WM ++ CNWV S PLD + + DC R SAGT HE TSW +F S+
Sbjct: 126 VDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKRAVAEGYGVIVLNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEMMQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTAVALTDSVHNVWHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSAGTDRHELTSWKSFPSI 385 The following BLAST results are available for this feature:
BLAST of TCONS_00059311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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