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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059314 ID=TCONS_00059314|Name=TCONS_00059314|organism=Clytia hemisphaerica|type=transcript|length=964bp
cagatttgaaaaagtcaataccaacaaaaaaataaaagagtgaaacaaaa
aaatggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGCATCAATCTTT
GATGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAACCTGCATGGAA
TTATCTTATGAAATTCGCGACGCAAAAATATCCAAATTACATATTGAAAG
CTTTGAAATACAGCGATGAAATTTATTACGTCTTATTGTTTGTTATGGAG
GAATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAGCATTTTATGA
GTTAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATGTTTCGACATG
CTAAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTATATTCAAGAC
AAGCTTGAGGAACGATACGAAATatcaaaagagaaaatattacgCGGTGA
TCTAAACGTCACAGATTTTGATCGATTTATTAATAAATGGTATCCATTGT
TTTTAACCATTTCAAAATGGCTTCGAATGTTGAATTATATGTTATATTTA
TTCCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGACCTCTATCCA
GTTGAAATACAAAACAAACGATGCCGATGAGGGTGCATCACAAGCGAAAG
ACGAACGAACATTTTTACGTAAAATGTTAACGATTCCGTTAGATTTTGTG
ACGTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACTCGCTCTCCTT
CTTAGAGACCTACTACCAACAAGAACCATTAAGTAACAAGCCAGGAGAAG
GAACTATCCCTCCACCACAGATGCCCAAGGTATTATCCAACTCTGTCAGA
CTACCGTCATCCAAGAAACAATGTCCGCTTTGCCATCAACCTCATCAAAA
ACCATCCACCTTGCCCGTCTCTGGtGCTTTGTCGGCACCTGTTACTGATT
GGTACTCAGCCCCA Run BLAST on NCBI protein sequence of TCONS_00059314-protein >TCONS_00059314-protein ID=TCONS_00059314-protein|Name=TCONS_00059314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MAIPFSFTTSPGASIFDVFAEDSLRSSLKPAWNYLMKFATQKYPNYILKA
LKYSDEIYYVLLFVMEEYSLRNKSASMTEAFYELKRESTALPYSFMFRHA
KMISLLSLVFIPYIQDKLEERYEISKEKILRGDLNVTDFDRFINKWYPLF
LTISKWLRMLNYMLYLFHYTGYQVPLLKLTSIQLKYKTNDADEGASQAKD
ERTFLRKMLTIPLDFVTSTITKMAPLLFYSLSFLETYYQQEPLSNKPGEG
TIPPPQMPKVLSNSVRLPSSKKQCPLCHQPHQKPSTLPVSGALSAPVTDW
YSAP Run BLAST on NCBI transcript from alignment at scaffold_326:94767..96972+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059314 ID=TCONS_00059314|Name=TCONS_00059314|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at scaffold_326:94767..96972+ (Clytia hemisphaerica)
cagatttgaaaaagtcaataccaacaaaaaaataaaagagtgaaacaaaa
aaatggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGCATCAATCTTT
GATGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAACCTGCATGGAA
TTATCTTATGAAATTCGCGACGCAAAAATATCCAAATTACATATTGAAAG
CTTTGAAATACAGCGATGAAATTTATTACGTCTTATTGTTTGTTATGGAG
GAATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAGCATTTTATGA
GTTAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATGTTTCGACATG
CTAAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTATATTCAAGAC
AAGCTTGAGGAACGATACGAAATatcaaaagagaaaatattacgCGGTGA
TCTAAACGTCACAGATTTTGATCGATTTATTAATAAATGGTATCCATTGT
TTTTAACCATTTCAAAATGGCTTCGAATGTTGAATTATATGTTATATTTA
TTCCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGACCTCTATCCA
GTTGAAATACAAAACAAACGATGCCGATGAGGGTGCATCACAAGCGAAAG
ACGAACGAACATTTTTACGTAAAATGTTAACGATTCCGTTAGATTTTGTG
ACGTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACTCGCTCTCCTT
CTTAGAGACCTACTACCAACAAGAACCATTAAGTAACAAGCCAGGAGAAG
GAACTATCCCTCCACCACAGATGCCCAAGGTTGGTGATTCCTTGGAGTTA
GCCTAggctttttactttttaatatACTTACTTCATTAATTGAAATAAGA
GTCGGTGCATTTTTCCCGTGTTGTGCAtcgtaccttaagggaagaaaatt
gggcggatttggcggatttgtcTGAaacccgccaaattaagttcccgtca
aatttaattattttctttttatgtctgatttttcacaatttactcctgat
atcaaatttttcaacctTATTTCGGATTCAAAAatccgtcatccgccaaa
tcAAATTCTCGCCGAAATTAGTTTTTCGCTGATTTGTCAAATGAAATTCC
CTACGAGAAACTTTTCAgccatttgccaaattaaattaagACGACCAAGA
GGTATACTTTTATACAACCTTAATTTGTTTCCTCACATCTCTCTCTTTCT
TCACATTATCAAGGTATTATCCAACTCTGTCAGACTACCGTCATCCAAGA
AACAATGTCCGCTTTGCCATCAACCTCATCAAAAACCATCCACCTTGCCC
GTCTCTGGGTTTGTATTTTGCCATCGTTGTTTACACAGCTATGTGCAGAG
ACATAAATGTTGTCCTGTTACGTACAGGCCGTGTCAAGTGCAGAACATTA
TTCAACTGCATACGAATGCGAGTATAAACTGATTACACTCATGTAATACg
cgtgtttttttatataagaataaatTATATAACGCTTTGATGGCTAAAAT
gtaaagaacaatttaagaacattttaaggctttgcagaccctaaaacact
aatttttttaaagaaaaggggtaaaaatactcacaaaatggtgaaaataa
gaacatgctaagaacattttaaggcttaaaactcaaaaagtcaagaactt
ccgcaaaggcttcaaaagttttggatggatgttcttataaaaaaacgtgt
actggaaaatttagccaaaaatcgaaacaaTAATAGTGTTAGCAACTACA
GTTAAGCTCTAAAATTACACTCGTTTTATATGAACCAGTTAATTTTGACG
TGGTttggtttttcttattttttggtagTTTACGccttgaaaatgttctt
attctTTTGCTATTTCTAAGGCAAAATTATGGAATTATAACTGtaaactt
ttttgttatttttgtcaaACTGTGCTGATGGGAACTTAATGGAATTCAAA
CCTTACTTTTACTAAATTTGTCTAAGATTTACCCATCTCAGGGTAAAatt
gttcttgttttttttggcattttgagcctcgttggtTTTTAGAactgctc
ttataaaaaagagagtGTAATGCAACAATTAAACAATTTGAaggttttta
ttattattttttatagtGCTTTGTCGGCACCTGTTACTGATTGGTACTCA
GCCCCA Coding sequence (CDS) from alignment at scaffold_326:94767..96972+ >TCONS_00059314 ID=TCONS_00059314|Name=TCONS_00059314|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_326:94767..96972+ (Clytia hemisphaerica)
atggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGCATCAATCTTTGA
TGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAACCTGCATGGAATT
ATCTTATGAAATTCGCGACGCAAAAATATCCAAATTACATATTGAAAGCT
TTGAAATACAGCGATGAAATTTATTACGTCTTATTGTTTGTTATGGAGGA
ATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAGCATTTTATGAGT
TAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATGTTTCGACATGCT
AAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTATATTCAAGACAA
GCTTGAGGAACGATACGAAATatcaaaagagaaaatattacgCGGTGATC
TAAACGTCACAGATTTTGATCGATTTATTAATAAATGGTATCCATTGTTT
TTAACCATTTCAAAATGGCTTCGAATGTTGAATTATATGTTATATTTATT
CCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGACCTCTATCCAGT
TGAAATACAAAACAAACGATGCCGATGAGGGTGCATCACAAGCGAAAGAC
GAACGAACATTTTTACGTAAAATGTTAACGATTCCGTTAGATTTTGTGAC
GTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACTCGCTCTCCTTCT
TAGAGACCTACTACCAACAAGAACCATTAAGTAACAAGCCAGGAGAAGGA
ACTATCCCTCCACCACAGATGCCCAAGGTATTATCCAACTCTGTCAGACT
ACCGTCATCCAAGAAACAATGTCCGCTTTGCCATCAACCTCATCAAAAAC
CATCCACCTTGCCCGTCTCTGGtGCTTTGTCGGCACCTGTTACTGATTGG
TACTCAGCCCCAatggcaATCCCGTTCTCCTTCACTACAAGTCCTGGTGC
ATCAATCTTTGATGTCTTTGCTGAAGATTCGCTCCGTTCATCACTCAAAC
CTGCATGGAATTATCTTATGAAATTCGCGACGCAAAAATATCCAAATTAC
ATATTGAAAGCTTTGAAATACAGCGATGAAATTTATTACGTCTTATTGTT
TGTTATGGAGGAATATAGTTTACGGAATAAGTCTGCTTCGATGACTGAAG
CATTTTATGAGTTAAAACGTGAATCAACTGCTCTCCCTTACTCCTTCATG
TTTCGACATGCTAAAATGATTTCATTGTTATCTTTAGTGTTTATCCCTTA
TATTCAAGACAAGCTTGAGGAACGATACGAAATatcaaaagagaaaatat
tacgCGGTGATCTAAACGTCACAGATTTTGATCGATTTATTAATAAATGG
TATCCATTGTTTTTAACCATTTCAAAATGGCTTCGAATGTTGAATTATAT
GTTATATTTATTCCATTACACTGGTTATCAGGTTCCCTTACTTAAATTGA
CCTCTATCCAGTTGAAATACAAAACAAACGATGCCGATGAGGGTGCATCA
CAAGCGAAAGACGAACGAACATTTTTACGTAAAATGTTAACGATTCCGTT
AGATTTTGTGACGTCAACAATAACAAAGATGGCTCCCCTTTTGTTTTACT
CGCTCTCCTTCTTAGAGACCTACTACCAACAAGAACCATTAAGTAACAAG
CCAGGAGAAGGAACTATCCCTCCACCACAGATGCCCAAGGTATTATCCAA
CTCTGTCAGACTACCGTCATCCAAGAAACAATGTCCGCTTTGCCATCAAC
CTCATCAAAAACCATCCACCTTGCCCGTCTCTGGtGCTTTGTCGGCACCT
GTTACTGATTGGTACTCAGCCCCAatggcaATCCCGTTCTCCTTCACTAC
AAGTCCTGGTGCATCAATCTTTGATGTCTTTGCTGAAGATTCGCTCCGTT
CATCACTCAAACCTGCATGGAATTATCTTATGAAATTCGCGACGCAAAAA
TATCCAAATTACATATTGAAAGCTTTGAAATACAGCGATGAAATTTATTA
CGTCTTATTGTTTGTTATGGAGGAATATAGTTTACGGAATAAGTCTGCTT
CGATGACTGAAGCATTTTATGAGTTAAAACGTGAATCAACTGCTCTCCCT
TACTCCTTCATGTTTCGACATGCTAAAATGATTTCATTGTTATCTTTAGT
GTTTATCCCTTATATTCAAGACAAGCTTGAGGAACGATACGAAATatcaa
aagagaaaatattacgCGGTGATCTAAACGTCACAGATTTTGATCGATTT
ATTAATAAATGGTATCCATTGTTTTTAACCATTTCAAAATGGCTTCGAAT
GTTGAATTATATGTTATATTTATTCCATTACACTGGTTATCAGGTTCCCT
TACTTAAATTGACCTCTATCCAGTTGAAATACAAAACAAACGATGCCGAT
GAGGGTGCATCACAAGCGAAAGACGAACGAACATTTTTACGTAAAATGTT
AACGATTCCGTTAGATTTTGTGACGTCAACAATAACAAAGATGGCTCCCC
TTTTGTTTTACTCGCTCTCCTTCTTAGAGACCTACTACCAACAAGAACCA
TTAAGTAACAAGCCAGGAGAAGGAACTATCCCTCCACCACAGATGCCCAA
GGTATTATCCAACTCTGTCAGACTACCGTCATCCAAGAAACAATGTCCGC
TTTGCCATCAACCTCATCAAAAACCATCCACCTTGCCCGTCTCTGGtGCT
TTGTCGGCACCTGTTACTGATTGGTACTCAGCCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059314-exon-scaffold_326-1491911889:94767..95595 | TCONS_00059314-exon-scaffold_326-1491911889:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1510915933:94767..95595 | TCONS_00059314-exon-scaffold_326-1510915933:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1575043694:94767..95595 | TCONS_00059314-exon-scaffold_326-1575043694:94767..95595 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1491911889:96030..96124 | TCONS_00059314-exon-scaffold_326-1491911889:96030..96124 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1510915933:96030..96124 | TCONS_00059314-exon-scaffold_326-1510915933:96030..96124 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1575043694:96030..96124 | TCONS_00059314-exon-scaffold_326-1575043694:96030..96124 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1491911889:96933..96972 | TCONS_00059314-exon-scaffold_326-1491911889:96933..96972 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1510915933:96933..96972 | TCONS_00059314-exon-scaffold_326-1510915933:96933..96972 | Clytia hemisphaerica | exon |
| TCONS_00059314-exon-scaffold_326-1575043694:96933..96972 | TCONS_00059314-exon-scaffold_326-1575043694:96933..96972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_326 | supercontig | scaffold_326:94767..96972 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006845 | Pex_N |
Blast
The following BLAST results are available for this feature:
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