TCONS_00059352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059352
Unique NameTCONS_00059352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1066

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059352 ID=TCONS_00059352|Name=TCONS_00059352|organism=Clytia hemisphaerica|type=transcript|length=1066bp
AAGAGATAGTACTtttttatcggagttttttttaagCAGATAGAAATGcT
GAAACTTCTAGCTCTTTTTTGCCTTATTGGCGTTTGCGTTGCTTATACCA
TCGAGAAAAACCCTCAAGTTACAGATAATGAATGGCATGTATGGAGATTA
ACACATAAGAAAGTTTACAAAGATTTGGACGAAAAAAGAGTTCGTTATGC
TATTTGGAAAGATAATGTTCAATACATCACTGAGTTCAATGCTCAAAACA
GAcacatgaaattgaaaatcaacCATTTCGGAGATTACACCAACCTTGAG
TTCAGATACTTGACAAACGGTCTCAGTCTAGAAAACAGAACATCCAAAGC
AACTTCCTTCTTGCAGCAAGGTGATGATGGACTCCCTGATAGTGTTGATT
GGCGAAGTAAAGGTTACGTGACTCCTGTTAAAAATCAAGGAGTGATGGGG
AAATGTTGGGCCTTCTCTGTGACAGGTGCATTCGAAGGTCAACTATTCAA
GAAAACAGGAAAATTGGTCAGTTTGAGTGAGCAAAATTTGGCAGACTGTG
TGAAGGGGTTTGGGTCGATTGATAATGGATATAATTACGTTATGGAGAAC
GGAGGTTTAGATACAGCAGAGGGATACCCTGGTCCTGGCaagGTTGGAGA
ATGCAGATATAATCCTAATGCGATCGGTGTCACGTGTACTGGTTGGGCGG
ATCTTTTGAAGGGCGATGAGAGCGCCCTCCAAAAAGCAGTGGCGTTAATC
GGCCCTATTGCGGTCGGCTTTGATGCCAGTCACAGGTCCTTCCAGTTCTA
TTCAAGTGGTGTTTACAGTGAACCTGATTGTTCAACAAGTCAGATCGATC
ACACAGCTCTGGTGGTTGGATATGGAGCAGAGGATGGAGTGGATTATTGG
ATTGTCAAAAACAGTTGGGGAACAAACTGGGGAGAGAAAGGTTATGTCAA
AATGCGAAGAAACTTCAACAACATGTGTGGAATTGCAACTATGGCTAGCT
ACCCGTATGTTGAAAGATGAAATGAACTCACAATACTTCTTTGACTATAT
ATATGCTTGTTAGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_326:267931..274287-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059352 ID=TCONS_00059352|Name=TCONS_00059352|organism=Clytia hemisphaerica|type=transcript|length=6357bp|location=Sequence derived from alignment at scaffold_326:267931..274287- (Clytia hemisphaerica)
AAGAGATAGTACTTTTTTATCGGAGTTTTTTTTAAGCAGATAGAAATGGT
ACGTATATATACTATTGATGTATTATGCAAACAAGTCAAAACAAATCATG
GTAATCCCAGGACTGATTCTAGGAATTTCTGAGAGGATGGCATTTTTCCG
GGGGGCAAAGTTCCTAGGAGTGGAAACTGTACGGGAGAGTCCCTGGGGGT
AATCTTCCCGTATATTGATTGCACGCCATAATGGCTGTTGGCTAGACGCA
ACAACGTTCATTTTTAACCAATCAAAAGCCAGTATGTTATCAAAGCGCAG
TGGTCCTGACGGGGAGAAAATCTCAATCCCTACCAAGTTTGTTCTCTTCG
AACTTTTGATTTTTGGACTTGGAACTTTAAGGTCTGTTACTAAACATCGC
AAGACAGAGTCAAGTTACAATAGAATAATATGAGTTATGACGTAATTTTG
ACATATAAAGATTCGATCTTAATCAAGACTCGAAGTTTTGCTGACATCGG
GCAGTTTATCGAATCTGTATCTCTCACAATTTTTTTCAGCTGAAACTTCT
AGCTCTTTTTTGCCTTATTGGCGTTTGCGTTGCTTATACCATCGAGAAAA
ACCCTCAAGTTACAGATAATGAATGGCATGTATGGAGATTAACACATAAG
AAAGTTTACAAAGATTTGGACGAAAAAAGAGTTCGTTATGCTATTTGGAA
AGATAATGTTCAATACATCACTGAGTTCAATGCTCAAAACAGACACATGA
AATTGAAAATCAACCATTTCGGAGATTACACCAACCTTGAGTTCAGGTTA
AATTTCTAATTACATTGTCCTTGCGCACTGGTGGATTTAAGACAATAGAG
GAAGCATGTCGGAAACCTGTGAAGGAGTGCAACGCTCGTTAAAAGGCAAT
GAAATTACAATTACAAATCTCTTCCTCTGATAAGTCCGACATGGTCTAAA
ACCACCTTTACTTGGATTTCGGAATAAAAGTCAAAATATTTCTGTTAAAA
CGTACAAAGTGACTCTTTACAGATGCCTTATAAACGAAGCTCCCCACAAC
CTTGCTTGTTAACTTTTCAATTTTTCTACCCCCTGCCATTACTAGGACCC
GCCCTGTTTATTTTGAACGAATGTTCAGTTGTCAAAGGAAGAGTGTCTTT
TCTTACTCCAAATAGCCAGGTTTTAGTCTCTGGATTACCTTATTCTATTT
TGGAGGTATTTAGATGTATTTCCAGTTGCCAGTAACTAGGCACCTGAGAG
TACTAAAGCCCCATAGCTCACTTTCTAATAATTCTGATAGCGCTTCCGAT
TGTATCACGTCCATCAGTAAAATTAAAAAGTAGTGCTCTGGGTACGAGAT
TACTTTTCACCCTTTTTAGATACTTGACAAACGGTCTCAGTCTAGAAAAC
AGAACATCCAAAGCAACTTCCTTCTTGCAGCAAGGTGATGATGGACTCCC
TGATAGTGTTGATTGGCGAAGTAAAGGTTACGTGACTCCTGTTAAAAATC
AAGGAGTGATGGGGAAATGTTGGGCCTTCTCTGTGGTAAGAATTACTTTC
TTATTTCATTTGGTACATTCGCGAAAGATGCGATGGAACCAAAAATATAG
CGAGTGAGGAGGTGCACCTTCGCGAATGGAAGAAAATTTTGATGTTGACC
CTGTAATATGCCTTGAAATCAAAACAGCCCAGAAAGAAAACTATTGAAAG
TATGAACCGTGATATTTTACAAATATCATTTTATTTGAAAAAAGTGAATG
GGTCATGTCTGATTCTCGATGGCGTGGACTCGGTTTGTTACCGAACATGG
TTTCTTTTCTATGTTCAAAATATAATTGATAATTGAGTATTTTAACGTTT
TTCAAAATTTTAAAGTTCGGATGAGAGTTGTTATTTTAGTACTTCTACTT
TATTTCATTTGGATATTTAGATTTTGGAGGGAGTTCAGTATGGCTTCTAA
GCTATATTCTCAGCCTCATTGGGGCAGTTTTGAGCTCTTCATTGAGATCC
TAGGGTCCTAAGACTTAAGTCCCATGTTAAAACTCTACGCTCCGGAAGTA
ACTTAGTAAACTTAAAATTTTGACCTTTTTATGAAATTTTTTGTCCATCA
TGTAGAAGGGACGTTGATCCTTTCCATGAAAAAAGAAACTAGAGAATTTT
GCGGTGCTGCTGATTTTCAAAAATTAAATTTATTAACACACCCCTCTTAG
AACCCTAGTTGAGGTTTTTCCGGGGGTGAAAGTTTCTATCGAAATTCCAA
TGTAGATAGGAATTCTATTGTTCCCAGCTCAAAATTTCAAGTGGGAATTT
TCCAGTGGGACTGGGGTCCGACCGGATTTGTGACAAAGGGGTGTATCAAT
GAGAATATATCCTAATGAAGTTTTCAATACAACGAATGAATAAATTTCAT
ATTTAAGACAGTGTCTGACTTTCTACTTCTTGTTCTAAGAAAGACTTGAT
AAATTTGAATTAAATCTCAAATTTTTAATCTGTTTGGCATAACTTTTAAT
TACAGACAGGTGCATTCGAAGGTCAACTATTCAAGAAAACAGGAAAATTG
GTCAGTTTGAGTGAGCAAAATTTGGCAGACTGTGTGAAGGGGTTTGGGTC
GATTGATAATGGATATAATTACGTTATGGAGAACGGAGGTTTAGATACAG
CAGAGGGATACCCTGGTCCTGGCAAGGTAAGGTTTGATATGTTTTCTAGA
GACTTTAATTATAACGTATTTTGAACGTGCACGGCTATAAGATCTCCACA
TCCTGATATCTATATATCCAAATATCCTATATATTCTATTCTGCCGTACA
ATCAAACGTACCAAAACGACAAAAATTCGGATAGTGCTGCGGTACAGCGA
CTTTGAAAAAAGCAAAGCAGGCTGGCGCTTTATCCAAGAAAGACTTCTCG
AAGAGTCTCTCCTAGCTTGGTTCGTCTCTTGATTTGTTCGAAAATGGAAA
TGTTTTCATTTGATTGTTTAGGGAACTTTTCAATTGTTTTAGGTAAATAC
GGTAAATCATCATGACATGTGTCATAGAATGCTAAAAGATCTATTACATA
AAGTCATGTACATTAATTTCCCAGCCCGAAGGGCTAGACTCAAGACTTTT
GGGAATAGGCCATTTCACGGTCGAAATGGATCATGGGTAATCAGGACTGA
TTGGGCCTCCATTACGGCTTCCCGTTGGCTAGACGCAAAAATCTTCAATT
TTTTTCAAAACTTTGGACCAATAGTAAGTCGTTATTAGCGCGCAGTGGTC
CTGATTACCCATTACGCTTTGCGACTGTGAAATGGCCTATGAAGCTACTT
AATTTAATCCAGAACACCCGCGCGTGGTTTTTACACAAATGCCGGATCGA
AAGTAAAATCTATCACTAGATTAAAAACTGCTAGATACAATCCGTCGTCA
TAATTGCAGCGCGTTCTAGGCGCGTTCTGGATGGGGAATAAGTAGCTTCA
ATCTGGCCCTTCGGGCTCTCAACTCAAAGGTATTGGTATTCCATCGGATA
AGCTGGGAATTATTTCTAATGTGAGCACCAAAGTTTAGCTTCCTCTTAAA
TTTAACCTGTGAAGAAAGATTGTATCAATCTTTTCTCGCTCGTCTCATTC
TTATTGTTTAAAGAATTGTACATACATCTAGTTTTTAACGATATTCTAAA
TTGTGTAGGGAATTATCTTATTCCGAAAAGATTCTTAAAATTTGTGCAAC
CATATCACTGAGATGGACGGGAAGAAGAAAAATATCAGTACCGTGAAAAG
CACAGCTCAAAATCATATATTTACGCTGTGCCGACGAATCGAGATTCTAT
TCATCGCGCAATCAGCGAAGACAAAAGTAACCATGACGACCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGACATTAATATGGTAATATTTGCTCTTCA
TCTTTGATTTTTTCTACAGTGATTAGATTGACACATGCGCGATAAAATTT
CTATTATTTGTCTTCATAGGTTACTATTTTCTTTGAAAACGTAACCTATG
ATACTCAGGGTAAAATATCAGCCCTTTACTTCAGAAAACTTTTAAGGCTG
TAGCTTTATTTCCCCGATAAATATATTCTTCTCACCTTTGGCACAAAAGC
TTATCTTGGTCTACTACCACAAGGTGAATTATGAGCCGTAGACCATATGT
GACCACGTGAAGTTAACGGGAAGACTGTCAGAAAAGTCCTAAATTAGTAC
ACTTTCAAAATGAGAATATCGAATTTATCCATCCAGTGACAATATCATTA
TCTATACTTAAGGTTGGAGAATGCAGATATAATCCTAATGCGATCGGTGT
CACGTGTACTGGTTGGGCGGATCTTTTGAAGGGCGATGAGAGCGCCCTCC
AAAAAGCAGTGGCGTTAATCGGCCCTATTGCGGTCGGCTTTGATGCCAGT
CACAGGTCCTTCCAGTTCTATTCAAGTGGTGTTTACAGTGAACCTGATTG
TTCAACAAGTCAGATCGATCACACAGCTCTGGTGGTTGGATATGGAGCAG
AGGATGGAGTGGATTATTGGATTGTCAAAAACAGGTATAATTTACTAGAA
TATATGAGTGCGAAGGTAGAGAGTATATCACTATTTTCCCTAACATCGAG
ATTGTCAAAAACAAAATTTGTTTCAATATAATTTAGCAGTGGAAACAAAC
AAGGGATCCACTCCTGTTTGTCTTTTCAACAACACAATTCGCTATCTTTC
GCTAAATTCGAACTCTATCAAAAGAGAGTCTCTGCTGCAAATTATATTGG
GATAGACTTTATTTGAAATATCTTTTAAGATTGAAATTGCAATTATCTTG
ATTAGGCGTTACCCTTTCAATACTTAGTTTTAAACAGCCAGAAAACGATG
AATATGAAAATGGTTTTAGGATAGTCTCAATCTTTTACAAATAACTGAAA
GACTTGTCTTTTTAGCTTTTTTATCTTGGCTTTTCCAACTAGAAAATCAT
AAACTAATAAGAAAAGTTCCATCTTTTTTGCAATCTTGATCGAATTCGTT
CTATTTTTTGACTCCTTGAGGCTTGTAGCAATAAAATCTTAAATAACAAA
TTGAGTTTAAGCATCAATTAAGAGCATGGAGATATATGGAGATTTTTCAG
ATACAATTTTGAAAATCCCAATCAAAATACCTCGGATCTGAGGTTGAATA
CACCAGTATTTTTCTAACTTACACTTTATGAGAGCCAGTAAATTTTGGCT
AAGGCTGGGTTTTCCTTAATTTTATGAAACTCACAGGCTTACATGTTCTC
AATACGCCCAGTTTCTTTATTCAAAAACTTAAACTTGGCTTAAATTTTTT
TTTTAGAGGTCATCGCGTAAGTAATGTTTACCATCTAAACGTTCAAGCAT
TTTCGGAACGTACTAGAGAAATCATATACAAGTCGGTATTGAAAAATATA
AAATATACTATATACCGGAGCCTGTCCCTTTTGGATTTGAATAAAATTCT
ACTAGAATTATGGATTATGTATAAGAAAGAAAGAAAACATTTAAATTTCA
TCTTGAGGGAGTCGTACTCTACCTCTCGATCCGATGCATCTCACTGTAGA
TCTAACGAGTGAGAAGCATATGATCGTTTTGAGAAAGTTTCATGTCTTTT
TGTCTGCTATCATTTCAGCTAGACGCTTGTAAAATAACGTACATTCACGT
TCCATCGCCCCATTTGCCTCAAAAACAAGCGGAGAAAAGGCCCATTTTTG
GCTTAGCTTAAATTCTGTACTTTCTAAGTAATTTCTGAAATCTGAGGCTT
AGGATAGTTTTCAATTTGTTCTTAGGTTTTGGCCGATTTTCAGCCTCTTG
TTCTTATAAAATAGTTCCTATGAAAAAAGCATGTAATTTTCTTTTTTTGC
TATAGTTGGGGAACAAACTGGGGAGAGAAAGGTTATGTCAAAATGCGAAG
AAACTTCAACAACATGTGTGGAATTGCAACTATGGCTAGCTACCCGTATG
TTGAAAGATGAAATGAACTCACAATACTTCTTTGACTATATATATGCTTG
TTAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037365XLOC_037365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059352-exon-scaffold_326-1575043694:274240..274287TCONS_00059352-exon-scaffold_326-1575043694:274240..274287Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1575043694:273492..273748TCONS_00059352-exon-scaffold_326-1575043694:273492..273748Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1575043694:272753..272918TCONS_00059352-exon-scaffold_326-1575043694:272753..272918Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1575043694:271612..271782TCONS_00059352-exon-scaffold_326-1575043694:271612..271782Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1575043694:269404..269675TCONS_00059352-exon-scaffold_326-1575043694:269404..269675Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1575043694:267931..268082TCONS_00059352-exon-scaffold_326-1575043694:267931..268082Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:274240..274287TCONS_00059352-exon-scaffold_326-1510915933:274240..274287Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:273492..273748TCONS_00059352-exon-scaffold_326-1510915933:273492..273748Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:272753..272918TCONS_00059352-exon-scaffold_326-1510915933:272753..272918Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:271612..271782TCONS_00059352-exon-scaffold_326-1510915933:271612..271782Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:269404..269675TCONS_00059352-exon-scaffold_326-1510915933:269404..269675Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1510915933:267931..268082TCONS_00059352-exon-scaffold_326-1510915933:267931..268082Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:274240..274287TCONS_00059352-exon-scaffold_326-1491911889:274240..274287Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:273492..273748TCONS_00059352-exon-scaffold_326-1491911889:273492..273748Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:272753..272918TCONS_00059352-exon-scaffold_326-1491911889:272753..272918Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:271612..271782TCONS_00059352-exon-scaffold_326-1491911889:271612..271782Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:269404..269675TCONS_00059352-exon-scaffold_326-1491911889:269404..269675Clytia hemisphaericaexon
TCONS_00059352-exon-scaffold_326-1491911889:267931..268082TCONS_00059352-exon-scaffold_326-1491911889:267931..268082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:267931..274287 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.35078	2.83538	1.22617	0.000681837	8.20111	9.36279	6.33371	14.5538	21.045	27.7482	12.6821	13.1542	4.20004	3.29623	36.3985	27.1027	4.14644	1.05731	4.06374	8.56205	20.4281	13.9218	1.08854	0	19.9801	11.426
Blast
[Close]
BLAST of TCONS_00059352 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 9.111e-96
Identity = 160/334 (47.90%), Postives = 202/334 (60.48%), Query Frame = 1 
Query:   55 LLALFCLIGVCVAYTIEKNPQVTDNEWHVWRLTHKKVYKDLDEKRVRYAIWKDNVQYITEFN---AQNRH-MKLKINHFGDYTNLEFRYLTNGLSLENRTSKATSFLQQGDDGLPDSVDWRSKGYVTPVKNQGVMGKCWAFSVTGAFEGQLFKKTGKLVSLSEQNLADCVKGFGS-------IDNGYNYVMENGGLDTAEGYPGPGKVGECRYNPNAIGVTCTGWADLLKGDESALQKAVALIGPIAVGFDASHRSFQFYSSGVYSEPDCSTSQIDHTALVVGYGAE----DGVDYWIVKNSWGTNWGEKGYVKMRRNFNNMCGIATMASYPYV 1011
            +LA FCL    +A  + K  Q  D +W+ W+ TH+++Y   +E+  R A+W+ N++ I   N   +Q +H   + +N FGD TN EFR +  G     +  K   F +     LP SVDWR KGYVTPVKNQ   G CWAFS TGA EGQ+F+KTGKLVSLSEQNL DC +  G+       +   + YV ENGGLD+ E YP       C+Y P       TG+  +  G E AL KAVA +GPI+V  DA H SFQFY SG+Y EPDCS+  +DH  LVVGYG E    +   YW+VKNSWG  WG  GYVK+ ++ NN CGIAT ASYP V
Sbjct:    6 VLAAFCL---GIASAVPKFDQNLDTKWYQWKATHRRLY-GANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMM-GCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00059352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL29.111e-9647.90Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
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