TCONS_00059360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059360
Unique NameTCONS_00059360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059360 ID=TCONS_00059360|Name=TCONS_00059360|organism=Clytia hemisphaerica|type=transcript|length=1131bp
GTCTGGCATTGCTCTTTACAGAGGAGTTTTTGTTTAACTAGACTAACTAT
GACAAATTACACTTCCAATACGAAAGTTGActtttttatgataaaaaaac
cAGAAGTTTGAATAAATTATCATGTCACTGGATCATTGTCATTCGGCTAC
TAATCCACTTATCTTGATCAAGGTATATTAATAAGATTGCATTACATTTT
TGTAGCATTTTTCCTTTCGATGTGCAAGGCTGTATGTGTGGTATAAAGTA
TTCTGCAGATCAAAGAAACGGAACACTACTTAAGATGGTGATACAGATAT
CATTTCGTCCAATCATTTTACTTCTGATTGTATCATCTTTAATCGAGTCT
GGGTCGGCTTATTATTTAAAGAAGGGCTTTCGAAAAACAATCGATAATGA
TAACAAAAGAAGTTTTAAACCAATTAGACACGGTTTTGATAATGCAGATG
AACCAATCAGAATTGATTTAGATTCTCTACAACCAATGAGAAATGACCTT
AAAGATTTTTATCAACCAATCAATGAAGATTCAATGGACTTTAAgaaacc
aatcaaatcaaatcattacccttttcaaacaacaaacaaaaaaagaaatt
tcaatgaACAGACCGTAATCGAACCAATAGAAAACGAATTATTGGATTTT
GGACCAATCAGTGAAGACCTGAGTCAAATCAAACCAATAAAAAACGACTT
CTTGGATTTTAAACAAATCAGTGAAGACCTGAATCAAATCGAACCAATGG
ACGACTTGGAATATGACAACGATTGGCGTAAATGTGGACGAAGATGGTGT
GACGGGCAGTATCGCATGTGTGACTCTGTTGCAAAGTCCCCTCGGGAGCA
ATACGAATGTAATATTGAGTTGTGGAAATGTCAAGACATCAGATGCTAAT
ATCAGAAATATCAGTTGAGTAGGTTGAATAAAAGATAAAATAGGTATTTT
TTTAGTATAATAACTAACCAGGACAATTTGAttgtatttgatatttttcc
aaTAACTTGTACTTAATTATATAATCTACTTGAACTTAACATGAAGATAT
GTGCTCTCCCATCTTCAGTTCTTTGGATATTAACGTGTGCGCGACTAAGT
TGTGGTGTTCATgttacttaagggctctgac
Run BLAST on NCBI

transcript from alignment at scaffold_326:394189..397734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059360 ID=TCONS_00059360|Name=TCONS_00059360|organism=Clytia hemisphaerica|type=transcript|length=3546bp|location=Sequence derived from alignment at scaffold_326:394189..397734- (Clytia hemisphaerica)
GTCTGGCATTGCTCTTTACAGAGGAGTTTTTGTTTAACTAGACTAACTAT
GACAAATTACACTTCCAATACGAAAGTTGACTTTTTTATGATAAAAAAAC
CAGAAGTTTGAATAAATTATCATGTCACTGGATCATTGTCATTCGGCTAC
TAATCCACTTATCTTGATCAAGGTATATTAATAAGATTGCATTACATTTT
TGTAGCATTTTTCCTTTCGATGTGCAAGGCTGTATGTGTGGTATAAAGTA
TTCTGCAGATCAAAGAAACGGTAAGTGTAAACTTAAAGGTTTTGTTTTTA
AATAGGAGTGATATCGTTTGCTTACTCATCAATTTCAATTCACAACCTTT
TTCACATTGGATTGACACGGGTGTGGAGCAAGATTGGTCAGAAATGAGAA
AAAAAACAACATTTTTTTGCTTAAATATCAGCACAATATAACAATAGCAA
GACTACTGTCCTGATATGAAATATGTGTCTGATATGAAACGAGAACACTT
GTAAAAATAAAACCTTTAAAGTCAGTCGCTTGGTTTAAATGTGCACTATT
TTTGCTCTTATGGAAACCGCTCCTAAGTGAACACTGTCATGGTTTTCACA
TGGTAACAGATGTACTTTTTAGTTTCATGCATGTTATTTGAGAATTCTCA
AAATGTAGAGATGCTTTTTTTTGAGTTTTAGAGTACTACAGGGTGTTCAT
AATAAAAGTATCGAGTCAAACAACAAGTAAAACGTTTTAATGTGTATTCA
TGATATTCATGACGTAATGTTTTCGACGGAAATACCCCGGTTTTAGCCAG
TAGTGACAAATTCAAACTAGACAAAAGTTGTAAATAATTTGCCACTACTG
GCTAAAACCGGGGTATTTCCGTAGAAAACATTACGTCATGAATATCATGA
ATGCAAGGTGTCCTGAAAAAAAGTCCTGTGTCAGAACACGACTATACAAA
TAGAAAAGTTTTTGTGTGTGTTTGTCAGTATTTACGTGATTTACTATAAT
ACGATCTTTAAAGTCTTTTTTACTTTTTTTGAACGAGACGTTCATTAAAA
TATTTCATTACACAATTAATATCTCGATATGTTTGTAAGTTTATTGCGTT
TCTGTTTCATCGTAGCAAGTGTTAAAAGTGTGAATAATTTTGTTGCATTA
AAGTGAGAAAATAGACATAAACACACAAAAAATCTACTTGTAGTCGTGGT
CTGACACAGTCTTTTTTTTCGCGATACCCTGTATTCACAAAATTGTATCT
CGAATTCTCACTTTTTTTCTTTGACTTTCTAAAAACGTACATTTGTACAA
CAAAGAAAGAACTAAAAAGGGCCTGTAGTTAAAATTAACTTTTGTAAAAA
TCCTATATGATGGAGTACTTTCTTATATTTTGGCGATAACAGACAAAGGA
GACAAAGCCCTTCTACAATCATGGTCAAAATAGAATGAGAATTCCGGTTA
TTTTAACGTTTTTCAAGATTTAAAGTTCTGGCGAGAAAGTCGATTTTGGG
CTATCTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCTACTCTTCAAACCTA
CTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAACTTCCCGGTGGATT
TCCCTTTTTTCTCAAATATTACGACCATGATTGTACTTGACATGTTCAAA
CTCGATATTTCTTCCGGATATTCTGTACTGCGAGGAATTTTTTAACCATC
GTTATCCCAGAAATGAAGCCAAAAACCAAATGGGGTTTTCCACTTGGGAA
TTCTTTTGGCCTTTTCGTTCACCGTGGGCTTGATGATATTCCACTCTGGT
TGTAACATAAGGTTTTGTCCCGGGGGGGGGGGGACANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTCGAGTCCCACGTAGGGTCCATTTTTCGAACCTCAG
CAGAGCACCCCCGTCGGTCAACAAGGGTAGTACCCCCCCCCCGGGGGTTT
TGTTTATAAAACAATTTTCTCGCATCTCGCAAGTAGGAAGTGAGTTGTTA
TAATCGAGTTTTAATATAAATCCGTTTTTTTTCAGGAACACTACTTAAGA
TGGTGATACAGATATCATTTCGTCCAATCATTTTACTTCTGATTGTATCA
TCTTTAATCGAGTCTGGGTCGGCTTATTATTTAAAGAAGGGCTTTCGAAA
AACAATCGATAATGATAACAAAAGAAGTTTTAAACCAATTAGACACGGTT
TTGATAATGCAGATGAACCAATCAGAATTGATTTAGATTCTCTACAACCA
ATGAGAAATGACCTTAAAGATTTTTATCAACCAATCAATGAAGATTCAAT
GGACTTTAAGAAACCAATCAAATCAAATCATTACCCTTTTCAAACAACAA
ACAAAAAAAGAAATTTCAATGAACAGACCGTAATCGAACCAATAGAAAAC
GAATTATTGGATTTTGGACCAATCAGTGAAGACCTGAGTCAAATCAAACC
AATAAAAAACGACTTCTTGGATTTTAAACAAATCAGTGAAGACCTGAATC
AAATCGAACCAATGGACGACTTGGAATATGACAACGATTGGCGTAAATGT
GGACGAAGATGGTGTGACGGGCAGTATCGCATGTGTGACTCTGTTGCAAA
GTCCCCTCGGGAGCAATACGAATGTAATATTGAGTTGTGGAAATGTCAAG
ACATCAGATGCTAATATCAGAAATATCAGTTGAGTAGGTTGAATAAAAGA
TAAAATAGGTATTTTTTTAGTATAATAACTAACCAGGACAATTTGATTGT
ATTTGATATTTTTCCAATAACTTGTACTTAATTATATAATCTACTTGAAC
TTAACATGAAGATATGTGCTCTCCCATCTTCAGTTCTTTGGATATTAACG
TGTGCGCGACTAAGTTGTGGTGTTCATGTTACTTAAGGGCTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037368XLOC_037368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059360-exon-scaffold_326-1575043694:397465..397734TCONS_00059360-exon-scaffold_326-1575043694:397465..397734Clytia hemisphaericaexon
TCONS_00059360-exon-scaffold_326-1575043694:394189..395049TCONS_00059360-exon-scaffold_326-1575043694:394189..395049Clytia hemisphaericaexon
TCONS_00059360-exon-scaffold_326-1510915933:397465..397734TCONS_00059360-exon-scaffold_326-1510915933:397465..397734Clytia hemisphaericaexon
TCONS_00059360-exon-scaffold_326-1510915933:394189..395049TCONS_00059360-exon-scaffold_326-1510915933:394189..395049Clytia hemisphaericaexon
TCONS_00059360-exon-scaffold_326-1491911889:397465..397734TCONS_00059360-exon-scaffold_326-1491911889:397465..397734Clytia hemisphaericaexon
TCONS_00059360-exon-scaffold_326-1491911889:394189..395049TCONS_00059360-exon-scaffold_326-1491911889:394189..395049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:394189..397734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.19509	8.07	3.15657	1.80682	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.99555	0.648812	0	0	99.0053	70.7964	0.690834	0.70385
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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