TCONS_00059369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059369
Unique NameTCONS_00059369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059369 ID=TCONS_00059369|Name=TCONS_00059369|organism=Clytia hemisphaerica|type=transcript|length=227bp
ATAAGATCTAAGGATtctcttaaaaaaacttttaaaaacttatataattt
ttacaaaaaaacaatattttggaaaatatttaacattACAGTTCATGATA
TTGCGCGTTATGTACTACCGAAACTTTTCTCAGGTGATTGGCATTCCagt
tttattcagttttaaatAAACCAACAATGGTAATTTTTACTAAGTTTCGT
GTCCAACAAAATTATTGTCAATTAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_326:72275..72501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059369 ID=TCONS_00059369|Name=TCONS_00059369|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at scaffold_326:72275..72501 (Clytia hemisphaerica)
TCTTAATTGACAATAATTTTGTTGGACACGAAACTTAGTAAAAATTACCA
TTGTTGGTTTatttaaaactgaataaaactGGAATGCCAATCACCTGAGA
AAAGTTTCGGTAGTACATAACGCGCAATATCATGAACTGTaatgttaaat
attttccaaaatattgtttttttgtaaaaattatataagtttttaaaagt
ttttttaagagaATCCTTAGATCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037375XLOC_037375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059369-exon-scaffold_326-1491911889:72275..72501TCONS_00059369-exon-scaffold_326-1491911889:72275..72501Clytia hemisphaericaexon
TCONS_00059369-exon-scaffold_326-1510915933:72275..72501TCONS_00059369-exon-scaffold_326-1510915933:72275..72501Clytia hemisphaericaexon
TCONS_00059369-exon-scaffold_326-1575043694:72275..72501TCONS_00059369-exon-scaffold_326-1575043694:72275..72501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:72275..72501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.7776	69.1518	40.1459	22.093	25.4019	15.3499	11.3963	14.67	25.2101	9.2524	6.73545	5.90349	7.36911	19.1322	15.7293	10.128	18.2993	18.7562	7.06711	11.0928	12.8556	18.8115	57.1696	32.3403	1.18963	6.37032	16.7125	17.836	17.2175	25.0598
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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