TCONS_00059370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059370
Unique NameTCONS_00059370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059370 ID=TCONS_00059370|Name=TCONS_00059370|organism=Clytia hemisphaerica|type=transcript|length=672bp
CTAAGATTTACAAAATTCATTATATTATTCTAAATATTGAGTCTCTTTAA
CTAGAACCTAACTCAGTGGATACATCTCGATAcattaactcgaacaagtt
ttatcgTTCCTTCAGTTGCATTTTTTTTATGTTAACAAACAACACCAAAG
TATTTCGATTGATACTAAATTTTATAGAAAGCCTGATtgaaaaatatagc
tttttaaaagaataaaatataaaatcgaaGTATCAAAATATAAACACAGA
AAAACACAATGCGAACTATCTAATTTTTGTGTATAACCCAATGAAATGTA
CAATATAAAGGAGTCACTTGAAATACAATTTGAATGATTAAGAAAACTGG
tgcaatttaaaattttcacatctAAAGAAATTGAAATCATCCAACCATGT
CAGGAGTCTGGGCATTTCATATGCCATGTATTACACGTCCATCAAGGTCA
ACGTCATCCTTATGCAATTGTTTGAGAATGAAACAATAGCATTCACCATC
GTGTATTGACAATCTTGAATCGGTAATATACAAGCAAAAATATATCAttc
aaaaacaaaccaaaagttTGACTCTCATATTATTATGACTCAGAAGAAGT
TTGGGTTCTAGTTCACAATGGCAAAAGTTTTGTAATTGAGAacacgtcaa
tgcaatgtcttctgacatttcA
Run BLAST on NCBI

transcript from alignment at scaffold_326:93389..94060

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059370 ID=TCONS_00059370|Name=TCONS_00059370|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at scaffold_326:93389..94060 (Clytia hemisphaerica)
TgaaatgtcagaagacattgcattgacgtgtTCTCAATTACAAAACTTTT
GCCATTGTGAACTAGAACCCAAACTTCTTCTGAGTCATAATAATATGAGA
GTCAaacttttggtttgtttttgaaTGATATATTTTTGCTTGTATATTAC
CGATTCAAGATTGTCAATACACGATGGTGAATGCTATTGTTTCATTCTCA
AACAATTGCATAAGGATGACGTTGACCTTGATGGACGTGTAATACATGGC
ATATGAAATGCCCAGACTCCTGACATGGTTGGATGATTTCAATTTCTTTa
gatgtgaaaattttaaattgcaCCAGTTTTCTTAATCATTCAAATTGTAT
TTCAAGTGACTCCTTTATATTGTACATTTCATTGGGTTATACACAAAAAT
TAGATAGTTCGCATTGTGTTTTTCTGTGTTTATATTTTGATACttcgatt
ttatattttattcttttaaaaagctatatttttcaATCAGGCTTTCTATA
AAATTTAGTATCAATCGAAATACTTTGGTGTTGTTTGTTAACATAAAAAA
AATGCAACTGAAGGAAcgataaaacttgttcgagttaatgTATCGAGATG
TATCCACTGAGTTAGGTTCTAGTTAAAGAGACTCAATATTTAGAATAATA
TAATGAATTTTGTAAATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037376XLOC_037376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059370-exon-scaffold_326-1491911889:93389..94060TCONS_00059370-exon-scaffold_326-1491911889:93389..94060Clytia hemisphaericaexon
TCONS_00059370-exon-scaffold_326-1510915933:93389..94060TCONS_00059370-exon-scaffold_326-1510915933:93389..94060Clytia hemisphaericaexon
TCONS_00059370-exon-scaffold_326-1575043694:93389..94060TCONS_00059370-exon-scaffold_326-1575043694:93389..94060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:93389..94060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.28332	5.23056	2.86307	2.37666	7.64673	7.10408	13.595	13.0964	10.3314	9.51782	9.78166	9.84924	9.98844	10.4789	12.6181	13.9147	15.4161	15.9189	11.5666	11.4217	13.4837	15.5026	10.1915	12.3807	8.1447	11.1604	11.1373	8.40995	8.76001	7.7986
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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