TCONS_00059372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059372
Unique NameTCONS_00059372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059372 ID=TCONS_00059372|Name=TCONS_00059372|organism=Clytia hemisphaerica|type=transcript|length=2530bp
GATTAAGATAAGATATTTCGTATAAGCTTACAAAAATACTGGGAGGTTTC
ACTATAAAGGTTTTAACACTCGACGAGTAAAGAGAAGAGGATAGCTTGGA
GAGAAGAAGATGGGCCACGTTTTATTCTATTCAACCATTTTATTGTCTCT
GGCTTACAGCTTTGTTTCAAGTGCATGCCCAAAGGAATGTCGCTGTTCGG
GTAAAAATTATGTTACATGTATAGGGAAAAATATAACGAACGAAGGTGTT
AAAGAAATCGCTGCACAATTGAATGAGACCGAACTTGAACATTTATATTT
TACAGAGAATAAGATCGATCATTTTGAAGTTAgttattttgtcaatttta
ctAAGCTTAAGAACATCGGTCTCCGTAAGAACTTACTAACAAAAGTTCCC
GCTAATGTCTCGATTTTAATTCCATCCATAACCCGACTAGGTCTTTCATA
TAACATGATAAACTCTATCGTTCGCGCGGATTTCGCTGGTTACCGATCTA
TCAAAGATTTGGATTTCAAAGGAAATGGAATTGAAAAACTTGACGCAAAT
CTATTCCAAGATATTCCAAGGCTGACAGATCTGCATTTCAACGACAACAA
AATCAAGGTGATTAAAAATGATACATTAAAAGGTTTAACAGAACTTGTTT
ATATTAACTTTAATGGTAATGGAGTGGAGATCATTGAAAATGGAGTTTTT
AACAACATGACTTATAATGAAGTCGAGGTTTATCTCCGGAATAATAAAAT
CCGGACGCTGGCATCGGGAACGTTCGGCTCGTCCCAGGGTGGAATGTCGG
TGAAATTGTCTGGTAATGAGTTAACACCGAATAGTATTCAACCCAAAGCA
TTTAATGTGGATTCTTTAGAACTAGATAATAATAATTTGACAGCTGTTCA
TCAAGATTGGTTCGCGTCTTCTTTGAATACTTTCTCATTAGAAGGTAACC
CATTAATATGTGATTGTGCTCTATACCAATCACTCGTCTTTACAGGAGGA
TATTTCTTTGGGACATGTAACAAAACATACAATCTAAACAAATTTTCTGG
AGAAAATAAGTTGAATTGTACTTCATGTTTTGGAAATCAATGCCAAAACG
GAGCCCAATGCCAAATTATCGATAAGTCTAATTATAATTGTTCATGCACT
GAAATGCATTCTGGGAGGTTCTGTCAATTGCGTATCAACAGTGATGGTGA
TGATGATGGGATTGCTGTTGGATATATTATATTGATTGTGGTGTTAGTTG
TATTACTGTTGGCTGGATTATTAGCAGTCGTTTGCTATACCAAGAACCGA
AAGGGGAACTGAATGTAGTTTGAGACCATGTttagacgttacggttccgt
tccaaaacggttccgaaacaagtgtgaacgtcaaaattcgaaacgtaaAA
GATGAAGACGTGTTAAAGCAAAACAAATCGGAAGGGTTTCgctacacttt
ttttatcggatcggaactgctccgttttcttgctccgaaacgttccgaaa
ccaaatatgaacacactcgatccgtaacgaaaatcataccggaaaGAAAC
GTAACAGTatcgtgtgaacatggtctgagACTGATGTAGTTTGTGAGACA
ATAACAGGTGTGATCAAATAATCAATCACTATACAATTTTTGAATATAGT
TTCTTCAAACGCTGTCTATATAATCAGaaggttttagtttttttttgtgt
ttgtgtATTTTTATCCATTAGCTCTACATAtgcttttacacgtttttttt
aataagaacatccaaaattttggaagccttggaatgttcttaacttttag
agttttaagcctaaaaatgttcttaacgtgttcttattttcgtcattttt
agagtatttttgtccattttcttatgaaatttggtgttctagagtccgca
aagccttaaaatattcttaacttgttcttaatattttggctatcgaaacC
TTAagttcttatatggtttgttcttataaaaaaacgtgtgctCGATTCAC
GGCAAACATGTTTAGCCCTCCCGTTTTCACCACTTTCACCATCTAACATT
ATAGTTTTAATTTTAGTgcatctaatttttttcttaaagttTTCAAGCTT
AAGGGAGAAAAGGTTATCCCTCTCTTTATAAGGATACCAGGACTTTAAAC
GGCGAGTCCCAGCTGGAccttgttttaacgttcaaataacgttatttgga
cgttatgaatgtcacatggacgttgttttgacgttgtgtgccgtctggaG
TTGACTTCAAGATGAGAAGTAGGGAAGATGTGTACAGATGAACAAATTGc
atatttggaaatttttttatgtatCTTCGTCTTTTCAGTCTCTTTCAGTC
AATATATATTGTAATatatattgtaatacgtaatgTATTGTAATGAAATA
TGGCAAATGCTCTTTCTTATAAGATCAGTTAGCACTTTAATAGAATTATA
ATGTTTTCACTTTGAACCATCTCTCTTTTTCCCGACAACGTCTCCCCTTA
TTCCGTAATACCTTAAAAatggaacttatt
Run BLAST on NCBI

protein sequence of TCONS_00059372-protein

>TCONS_00059372-protein ID=TCONS_00059372-protein|Name=TCONS_00059372-protein|organism=Clytia hemisphaerica|type=polypeptide|length=400bp
MGHVLFYSTILLSLAYSFVSSACPKECRCSGKNYVTCIGKNITNEGVKEI
AAQLNETELEHLYFTENKIDHFEVSYFVNFTKLKNIGLRKNLLTKVPANV
SILIPSITRLGLSYNMINSIVRADFAGYRSIKDLDFKGNGIEKLDANLFQ
DIPRLTDLHFNDNKIKVIKNDTLKGLTELVYINFNGNGVEIIENGVFNNM
TYNEVEVYLRNNKIRTLASGTFGSSQGGMSVKLSGNELTPNSIQPKAFNV
DSLELDNNNLTAVHQDWFASSLNTFSLEGNPLICDCALYQSLVFTGGYFF
GTCNKTYNLNKFSGENKLNCTSCFGNQCQNGAQCQIIDKSNYNCSCTEMH
SGRFCQLRINSDGDDDGIAVGYIILIVVLVVLLLAGLLAVVCYTKNRKGN
Run BLAST on NCBI

transcript from alignment at scaffold_326:109609..112138

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059372 ID=TCONS_00059372|Name=TCONS_00059372|organism=Clytia hemisphaerica|type=transcript|length=2530bp|location=Sequence derived from alignment at scaffold_326:109609..112138 (Clytia hemisphaerica)
aataagttccatTTTTAAGGTATTACGGAATAAGGGGAGACGTTGTCGGG
AAAAAGAGAGATGGTTCAAAGTGAAAACATTATAATTCTATTAAAGTGCT
AACTGATCTTATAAGAAAGAGCATTTGCCATATTTCATTACAATAcatta
cgtattacaatatatATTACAATATATATTGACTGAAAGAGACTGAAAAG
ACGAAGatacataaaaaaatttccaaatatgCAATTTGTTCATCTGTACA
CATCTTCCCTACTTCTCATCTTGAAGTCAACtccagacggcacacaacgt
caaaacaacgtccatgtgacattcataacgtccaaataacgttatttgaa
cgttaaaacaaggTCCAGCTGGGACTCGCCGTTTAAAGTCCTGGTATCCT
TATAAAGAGAGGGATAACCTTTTCTCCCTTAAGCTTGAAaactttaagaa
aaaaattagatgcACTAAAATTAAAACTATAATGTTAGATGGTGAAAGTG
GTGAAAACGGGAGGGCTAAACATGTTTGCCGTGAATCGagcacacgtttt
tttataagaacaaaccatataagaactTAAGgtttcgatagccaaaatat
taagaacaagttaagaatattttaaggctttgcggactctagaacaccaa
atttcataagaaaatggacaaaaatactctaaaaatgacgaaaataagaa
cacgttaagaacatttttaggcttaaaactctaaaagttaagaacattcc
aaggcttccaaaattttggatgttcttattaaaaaaaacgtgtaaaagca
TATGTAGAGCTAATGGATAAAAATacacaaacacaaaaaaaaactaaaac
cttCTGATTATATAGACAGCGTTTGAAGAAACTATATTCAAAAATTGTAT
AGTGATTGATTATTTGATCACACCTGTTATTGTCTCACAAACTACATCAG
TctcagaccatgttcacacgatACTGTTACGTTTCtttccggtatgattt
tcgttacggatcgagtgtgttcatatttggtttcggaacgtttcggagca
agaaaacggagcagttccgatccgataaaaaaagtgtagcGAAACCCTTC
CGATTTGTTTTGCTTTAACACGTCTTCATCTTttacgtttcgaattttga
cgttcacacttgtttcggaaccgttttggaacggaaccgtaacgtctaaA
CATGGTCTCAAACTACATTCAGTTCCCCTTTCGGTTCTTGGTATAGCAAA
CGACTGCTAATAATCCAGCCAACAGTAATACAACTAACACCACAATCAAT
ATAATATATCCAACAGCAATCCCATCATCATCACCATCACTGTTGATACG
CAATTGACAGAACCTCCCAGAATGCATTTCAGTGCATGAACAATTATAAT
TAGACTTATCGATAATTTGGCATTGGGCTCCGTTTTGGCATTGATTTCCA
AAACATGAAGTACAATTCAACTTATTTTCTCCAGAAAATTTGTTTAGATT
GTATGTTTTGTTACATGTCCCAAAGAAATATCCTCCTGTAAAGACGAGTG
ATTGGTATAGAGCACAATCACATATTAATGGGTTACCTTCTAATGAGAAA
GTATTCAAAGAAGACGCGAACCAATCTTGATGAACAGCTGTCAAATTATT
ATTATCTAGTTCTAAAGAATCCACATTAAATGCTTTGGGTTGAATACTAT
TCGGTGTTAACTCATTACCAGACAATTTCACCGACATTCCACCCTGGGAC
GAGCCGAACGTTCCCGATGCCAGCGTCCGGATTTTATTATTCCGGAGATA
AACCTCGACTTCATTATAAGTCATGTTGTTAAAAACTCCATTTTCAATGA
TCTCCACTCCATTACCATTAAAGTTAATATAAACAAGTTCTGTTAAACCT
TTTAATGTATCATTTTTAATCACCTTGATTTTGTTGTCGTTGAAATGCAG
ATCTGTCAGCCTTGGAATATCTTGGAATAGATTTGCGTCAAGTTTTTCAA
TTCCATTTCCTTTGAAATCCAAATCTTTGATAGATCGGTAACCAGCGAAA
TCCGCGCGAACGATAGAGTTTATCATGTTATATGAAAGACCTAGTCGGGT
TATGGATGGAATTAAAATCGAGACATTAGCGGGAACTTTTGTTAGTAAGT
TCTTACGGAGACCGATGTTCTTAAGCTTagtaaaattgacaaaataacTA
ACTTCAAAATGATCGATCTTATTCTCTGTAAAATATAAATGTTCAAGTTC
GGTCTCATTCAATTGTGCAGCGATTTCTTTAACACCTTCGTTCGTTATAT
TTTTCCCTATACATGTAACATAATTTTTACCCGAACAGCGACATTCCTTT
GGGCATGCACTTGAAACAAAGCTGTAAGCCAGAGACAATAAAATGGTTGA
ATAGAATAAAACGTGGCCCATCTTCTTCTCTCCAAGCTATCCTCTTCTCT
TTACTCGTCGAGTGTTAAAACCTTTATAGTGAAACCTCCCAGTATTTTTG
TAAGCTTATACGAAATATCTTATCTTAATC

Coding sequence (CDS) from alignment at scaffold_326:109609..112138

>TCONS_00059372 ID=TCONS_00059372|Name=TCONS_00059372|organism=Clytia hemisphaerica|type=CDS|length=1203bp|location=Sequence derived from alignment at scaffold_326:109609..112138 (Clytia hemisphaerica)
TCAGTTCCCCTTTCGGTTCTTGGTATAGCAAACGACTGCTAATAATCCAG
CCAACAGTAATACAACTAACACCACAATCAATATAATATATCCAACAGCA
ATCCCATCATCATCACCATCACTGTTGATACGCAATTGACAGAACCTCCC
AGAATGCATTTCAGTGCATGAACAATTATAATTAGACTTATCGATAATTT
GGCATTGGGCTCCGTTTTGGCATTGATTTCCAAAACATGAAGTACAATTC
AACTTATTTTCTCCAGAAAATTTGTTTAGATTGTATGTTTTGTTACATGT
CCCAAAGAAATATCCTCCTGTAAAGACGAGTGATTGGTATAGAGCACAAT
CACATATTAATGGGTTACCTTCTAATGAGAAAGTATTCAAAGAAGACGCG
AACCAATCTTGATGAACAGCTGTCAAATTATTATTATCTAGTTCTAAAGA
ATCCACATTAAATGCTTTGGGTTGAATACTATTCGGTGTTAACTCATTAC
CAGACAATTTCACCGACATTCCACCCTGGGACGAGCCGAACGTTCCCGAT
GCCAGCGTCCGGATTTTATTATTCCGGAGATAAACCTCGACTTCATTATA
AGTCATGTTGTTAAAAACTCCATTTTCAATGATCTCCACTCCATTACCAT
TAAAGTTAATATAAACAAGTTCTGTTAAACCTTTTAATGTATCATTTTTA
ATCACCTTGATTTTGTTGTCGTTGAAATGCAGATCTGTCAGCCTTGGAAT
ATCTTGGAATAGATTTGCGTCAAGTTTTTCAATTCCATTTCCTTTGAAAT
CCAAATCTTTGATAGATCGGTAACCAGCGAAATCCGCGCGAACGATAGAG
TTTATCATGTTATATGAAAGACCTAGTCGGGTTATGGATGGAATTAAAAT
CGAGACATTAGCGGGAACTTTTGTTAGTAAGTTCTTACGGAGACCGATGT
TCTTAAGCTTagtaaaattgacaaaataacTAACTTCAAAATGATCGATC
TTATTCTCTGTAAAATATAAATGTTCAAGTTCGGTCTCATTCAATTGTGC
AGCGATTTCTTTAACACCTTCGTTCGTTATATTTTTCCCTATACATGTAA
CATAATTTTTACCCGAACAGCGACATTCCTTTGGGCATGCACTTGAAACA
AAGCTGTAAGCCAGAGACAATAAAATGGTTGAATAGAATAAAACGTGGCC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037378XLOC_037378Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059372-proteinTCONS_00059372-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059372-exon-scaffold_326-1491911889:109609..112138TCONS_00059372-exon-scaffold_326-1491911889:109609..112138Clytia hemisphaericaexon
TCONS_00059372-exon-scaffold_326-1510915933:109609..112138TCONS_00059372-exon-scaffold_326-1510915933:109609..112138Clytia hemisphaericaexon
TCONS_00059372-exon-scaffold_326-1575043694:109609..112138TCONS_00059372-exon-scaffold_326-1575043694:109609..112138Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:109609..112138 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201835	0.192355	0.580856	0.834877	4.0719	3.47468	3.21981	3.29136	1.6751	1.96828	0.67164	1.06549	1.01335	1.13506	0.786999	0.894528	19.3401	15.6288	0.626158	0.671803	26.7059	24.8375	5.73685	8.18543	4.36734	4.12475	4.12757	2.97528	1.02312	1.28121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675L_dom-like
IPR013032EGF-like_CS
IPR000742EGF-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00059372 vs. Swiss-Prot (Human)
Match: LRRT4 (Leucine-rich repeat transmembrane neuronal protein 4 OS=Homo sapiens GN=LRRTM4 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.431e-17
Identity = 82/301 (27.24%), Postives = 135/301 (44.85%), Query Frame = 2 
Query:  173 ACPKECRCSGKNYVTC-------IGKNITNEGVKEIAAQLNETE------------LEHLYFTENKIDHFEVSYFVNFTKLKNIGLRKNLLTKVPANVSILIPSITRLGLSYNMINSIVRADFAGYRSIKDLDFKGNGIEKLDANLFQDIPRLTDLHFNDNKIKVIKNDTLKGLTELVYINFNGNGVEIIENGVFNNMTYNEVEVYLRNNKIRTLASGTFGSSQGGMSVKLSGNELTPNSIQPKAF----NVDSLELDNNNLTAVHQD----WFASSLNTFSLEGNPLICD---CALYQSL 985
            ACPK CRC GK  V C       I +NI+  G + ++ + N  +            L  LY   N I   +   F    +LK + L  N +T +       +P++  L LSYN + ++    F G R +  L  + N ++ +   +FQD   L  L    N+++ +  +   GL +L  ++   N    I    F  + +N   +YL+ N+IR+++ G   +     ++ LSGN++    I+P  F    N+  L LD+N LT + Q+    W   SL + +L GN   C    C L+  L
Sbjct:   33 ACPKNCRCDGK-IVYCESHAFADIPENISG-GSQGLSLRFNSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLDLSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKELHLEHNQFSKINFAHFPRL-FNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDI--QGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWI--SLISITLSGNMWECSRSICPLFYWL 326
The following BLAST results are available for this feature:
BLAST of TCONS_00059372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRT42.431e-1727.24Leucine-rich repeat transmembrane neuronal protein... [more]
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