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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059374 ID=TCONS_00059374|Name=TCONS_00059374|organism=Clytia hemisphaerica|type=transcript|length=2250bp
taagaaacatcctaaggcttcaaaaatttttggatgttcatataaaaaac
gtgtacgtctCTTAGCTATACTCGAGGGGTAGTATTTATAGTCTGAGAGC
ATAAGAGATTAGAAGTATTTCTGTACTTCACTCTCTCATCTCTCTGTATA
TTCGATTTTTGATAGCAAAAAATGCTGGTGACATTATCATTTGTTTTGCT
TTGCATTATTTCACCATGCGATGGCAGCAAAGATCTGTTGAATTTGTCGA
ATGATATACAACAAATGCTAAGCTGTCTTCAACAAAGGAATATCACAGTG
TTTGCTCATTATGCATTACCAAGAtattttgataaactttttgagctttt
caaGTCTGAATTTGTCGATAATGAATTTTGTTACATTGTTAATTTTTATC
TCCGAGACGAGGACCGTATCATCAGACTGacaaaagaagcaaacaaaaat
gttattgaaaaatattcttcatcgAAATATCATTATACAGCCCACTTGAG
AATGAAAAAACTGATGAATCAGATTTACGAGGATACCATTATGTTTGGGA
AAGACTTTTTCGCGACAAAacaaacttttgtttttatttttgacgaATAT
TTCCCCTACGTTCATATTCTGCTACCATACATAGAAAAACTCCGAGAAAC
CGGTATTTTTGAGGTTATCATATACGGAGATGCTTCCCGCTACGAGTCAA
TTGCAAATCTGAAAATACCGCTCCACAACCTCTTCTTAACAGGAACACCA
GATTTTACGGAGCTATCGCTAAAAAATCTAATAGATGTCATTAAAAATAC
TGATTTCAATCGATATAATTTCTACCGCTCAATACAtttccaaaaagatt
ttttaaaccaTACTTGTTTAAACGGTATTGGAACAATCCACATCAAGATA
GCATCGATAGATGATCTGTATTTACCAATGGCTCTGGCGATTTTGCAAAA
GGAGAATGAACATCGAAAGAGAATGGGGAATTTCAAATTCATGAAAATCA
TATTCTATTCATTATATGAAGTACCAGATTTAGTGAATTTTATTGATGAT
AATTTGAAAGTATTTTCCATACATCGTTTTCCAGAATGGCAACGaggaat
gaaaaatatatttctttcaaTTCTCGATAACAGTTTATATAATACTAATA
TTGTGGCCTTTGAAGATGAATATGTTTACCGCATCCCATCCGTTCAACCT
CcagaaacatatcaaaatctaAAATGGGTACTTTTTGAAAGTGCAGATGA
ATTTTATTACAAATTGAACGCAGATATTTGCAATTAAGATAAAACAAACT
GAGTGCTTTACTCGTTTGAAACAACCAGGCTTGAATATTGTTATGAATTC
GTTATTGTATTTCAAACTGCACTTAACGTTGTTCCAATATTAACATTAAC
GTCATTTTAGCATAAACAACGTTCTGACGTAACGTTATGGACGTTGTCTT
GATGTTTCGAGAGAAATCTATTTAATTACTGGATTGGGAATAAACTTATA
AAAGTTGAAGATTAAACTCAATTTTACCACTTCAGTTCACCAAactatta
tatgtaaccattcTCCCTACTACCCTCATCTCAGATTAGgctttttccag
aaaaaaaattgaatacggggtggaggatataaataacatttctaagaaat
ttaccccctggacattgtgacttttgaccccccggacagcaggtcttaac
ccctggacaagcatcagttgaccccctggacattaaAAATTACTCTTAAA
CAGGGCGGaatcccccccaaaaaaaaaacaaatttaccccccagacaagg
taaattttgtagatttttcactacccccccggacattatatcctccaccc
ccatgtacggacattttctggaaaagtccattttcgagttcattatgcTT
TGCAATCACTACCCAGTGGAGGATGGACCTTATGTAGAAATTCGTTTTTA
ACTGAAATTAACATCCATACTGATTTTCTGTCTCATTTTTCTTACTAGCA
TACTAGGCAGCAGCAAGCACGGACAGTTGTTTGTCTATATATTCCTGTCA
AAAACCAATGGCTTTGAGGTTTGACGAGCTTGGGATTTGAGTAGCAGGTA
TACACTGAGTTTCTGATTGTATGTATTGGCTAGATATGCTCTGTTGGGTT
GTCGCGGAGGATGCGAGGATTTCTTGAGTTTTAAAAGATATATAGAGAAG
CTCGCGTTTTGCATGCTCAGAGCAgatcaatttttttgacaaaatcttcG Run BLAST on NCBI protein sequence of TCONS_00059374-protein >TCONS_00059374-protein ID=TCONS_00059374-protein|Name=TCONS_00059374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MLVTLSFVLLCIISPCDGSKDLLNLSNDIQQMLSCLQQRNITVFAHYALP
RYFDKLFELFKSEFVDNEFCYIVNFYLRDEDRIIRLTKEANKNVIEKYSS
SKYHYTAHLRMKKLMNQIYEDTIMFGKDFFATKQTFVFIFDEYFPYVHIL
LPYIEKLRETGIFEVIIYGDASRYESIANLKIPLHNLFLTGTPDFTELSL
KNLIDVIKNTDFNRYNFYRSIHFQKDFLNHTCLNGIGTIHIKIASIDDLY
LPMALAILQKENEHRKRMGNFKFMKIIFYSLYEVPDLVNFIDDNLKVFSI
HRFPEWQRGMKNIFLSILDNSLYNTNIVAFEDEYVYRIPSVQPPETYQNL
KWVLFESADEFYYKLNADICN Run BLAST on NCBI transcript from alignment at scaffold_326:200652..202901 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059374 ID=TCONS_00059374|Name=TCONS_00059374|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_326:200652..202901 (Clytia hemisphaerica)
CgaagattttgtcaaaaaaattgatcTGCTCTGAGCATGCAAAACGCGAG
CTTCTCTATATATCTTTTAAAACTCAAGAAATCCTCGCATCCTCCGCGAC
AACCCAACAGAGCATATCTAGCCAATACATACAATCAGAAACTCAGTGTA
TACCTGCTACTCAAATCCCAAGCTCGTCAAACCTCAAAGCCATTGGTTTT
TGACAGGAATATATAGACAAACAACTGTCCGTGCTTGCTGCTGCCTAGTA
TGCTAGTAAGAAAAATGAGACAGAAAATCAGTATGGATGTTAATTTCAGT
TAAAAACGAATTTCTACATAAGGTCCATCCTCCACTGGGTAGTGATTGCA
AAgcataatgaactcgaaaatggacttttccagaaaatgtccgtacatgg
gggtggaggatataatgtccgggggggtagtgaaaaatctacaaaattta
ccttgtctggggggtaaatttgttttttttttgggggggattCCGCCCTG
TTTAAGAGTAATTTttaatgtccagggggtcaactgatgcttgtccaggg
gttaagacctgctgtccggggggtcaaaagtcacaatgtccagggggtaa
atttcttagaaatgttatttatatcctccaccccgtattcaatttttttt
ctggaaaaagcCTAATCTGAGATGAGGGTAGTAGGGAgaatggttacata
taatagtTTGGTGAACTGAAGTGGTAAAATTGAGTTTAATCTTCAACTTT
TATAAGTTTATTCCCAATCCAGTAATTAAATAGATTTCTCTCGAAACATC
AAGACAACGTCCATAACGTTACGTCAGAACGTTGTTTATGCTAAAATGAC
GTTAATGTTAATATTGGAACAACGTTAAGTGCAGTTTGAAATACAATAAC
GAATTCATAACAATATTCAAGCCTGGTTGTTTCAAACGAGTAAAGCACTC
AGTTTGTTTTATCTTAATTGCAAATATCTGCGTTCAATTTGTAATAAAAT
TCATCTGCACTTTCAAAAAGTACCCATTTtagattttgatatgtttctgG
AGGTTGAACGGATGGGATGCGGTAAACATATTCATCTTCAAAGGCCACAA
TATTAGTATTATATAAACTGTTATCGAGAAttgaaagaaatatatttttc
attcctCGTTGCCATTCTGGAAAACGATGTATGGAAAATACTTTCAAATT
ATCATCAATAAAATTCACTAAATCTGGTACTTCATATAATGAATAGAATA
TGATTTTCATGAATTTGAAATTCCCCATTCTCTTTCGATGTTCATTCTCC
TTTTGCAAAATCGCCAGAGCCATTGGTAAATACAGATCATCTATCGATGC
TATCTTGATGTGGATTGTTCCAATACCGTTTAAACAAGTAtggtttaaaa
aatctttttggaaaTGTATTGAGCGGTAGAAATTATATCGATTGAAATCA
GTATTTTTAATGACATCTATTAGATTTTTTAGCGATAGCTCCGTAAAATC
TGGTGTTCCTGTTAAGAAGAGGTTGTGGAGCGGTATTTTCAGATTTGCAA
TTGACTCGTAGCGGGAAGCATCTCCGTATATGATAACCTCAAAAATACCG
GTTTCTCGGAGTTTTTCTATGTATGGTAGCAGAATATGAACGTAGGGGAA
ATATtcgtcaaaaataaaaacaaaagtttgtTTTGTCGCGAAAAAGTCTT
TCCCAAACATAATGGTATCCTCGTAAATCTGATTCATCAGTTTTTTCATT
CTCAAGTGGGCTGTATAATGATATTTcgatgaagaatatttttcaataac
atttttgtttgcttcttttgtCAGTCTGATGATACGGTCCTCGTCTCGGA
GATAAAAATTAACAATGTAACAAAATTCATTATCGACAAATTCAGACttg
aaaagctcaaaaagtttatcaaaataTCTTGGTAATGCATAATGAGCAAA
CACTGTGATATTCCTTTGTTGAAGACAGCTTAGCATTTGTTGTATATCAT
TCGACAAATTCAACAGATCTTTGCTGCCATCGCATGGTGAAATAATGCAA
AGCAAAACAAATGATAATGTCACCAGCATTTTTTGCTATCAAAAATCGAA
TATACAGAGAGATGAGAGAGTGAAGTACAGAAATACTTCTAATCTCTTAT
GCTCTCAGACTATAAATACTACCCCTCGAGTATAGCTAAGagacgtacac
gttttttatatgaacatccaaaaatttttgaagccttaggatgtttctta
Coding sequence (CDS) from alignment at scaffold_326:200652..202901 >TCONS_00059374 ID=TCONS_00059374|Name=TCONS_00059374|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_326:200652..202901 (Clytia hemisphaerica)
TTAATTGCAAATATCTGCGTTCAATTTGTAATAAAATTCATCTGCACTTT
CAAAAAGTACCCATTTtagattttgatatgtttctgGAGGTTGAACGGAT
GGGATGCGGTAAACATATTCATCTTCAAAGGCCACAATATTAGTATTATA
TAAACTGTTATCGAGAAttgaaagaaatatatttttcattcctCGTTGCC
ATTCTGGAAAACGATGTATGGAAAATACTTTCAAATTATCATCAATAAAA
TTCACTAAATCTGGTACTTCATATAATGAATAGAATATGATTTTCATGAA
TTTGAAATTCCCCATTCTCTTTCGATGTTCATTCTCCTTTTGCAAAATCG
CCAGAGCCATTGGTAAATACAGATCATCTATCGATGCTATCTTGATGTGG
ATTGTTCCAATACCGTTTAAACAAGTAtggtttaaaaaatctttttggaa
aTGTATTGAGCGGTAGAAATTATATCGATTGAAATCAGTATTTTTAATGA
CATCTATTAGATTTTTTAGCGATAGCTCCGTAAAATCTGGTGTTCCTGTT
AAGAAGAGGTTGTGGAGCGGTATTTTCAGATTTGCAATTGACTCGTAGCG
GGAAGCATCTCCGTATATGATAACCTCAAAAATACCGGTTTCTCGGAGTT
TTTCTATGTATGGTAGCAGAATATGAACGTAGGGGAAATATtcgtcaaaa
ataaaaacaaaagtttgtTTTGTCGCGAAAAAGTCTTTCCCAAACATAAT
GGTATCCTCGTAAATCTGATTCATCAGTTTTTTCATTCTCAAGTGGGCTG
TATAATGATATTTcgatgaagaatatttttcaataacatttttgtttgct
tcttttgtCAGTCTGATGATACGGTCCTCGTCTCGGAGATAAAAATTAAC
AATGTAACAAAATTCATTATCGACAAATTCAGACttgaaaagctcaaaaa
gtttatcaaaataTCTTGGTAATGCATAATGAGCAAACACTGTGATATTC
CTTTGTTGAAGACAGCTTAGCATTTGTTGTATATCATTCGACAAATTCAA
CAGATCTTTGCTGCCATCGCATGGTGAAATAATGCAAAGCAAAACAAATG
ATAATGTCACCAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059374-exon-scaffold_326-1491911889:200652..202901 | TCONS_00059374-exon-scaffold_326-1491911889:200652..202901 | Clytia hemisphaerica | exon |
| TCONS_00059374-exon-scaffold_326-1510915933:200652..202901 | TCONS_00059374-exon-scaffold_326-1510915933:200652..202901 | Clytia hemisphaerica | exon |
| TCONS_00059374-exon-scaffold_326-1575043694:200652..202901 | TCONS_00059374-exon-scaffold_326-1575043694:200652..202901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_326 | supercontig | scaffold_326:200652..202901 . |
Blast
The following BLAST results are available for this feature:
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