TCONS_00059408 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059408
Unique Name	TCONS_00059408
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	625

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_327:199936..209850+

transcript sequence

>TCONS_00059408 ID=TCONS_00059408|Name=TCONS_00059408|organism=Clytia hemisphaerica|type=transcript|length=625bp
atgtacaaacagtatgaagtaagcctgagtaagccctgaatactaaagTA
TCAACTtttaacgaacaaaacttgatttacaaacaggaatatctaaccaa
acgacgtttgatagcttgaacggtcaacttaatcttctttatgatgaacc
tatagtctgcggccgggtcaggaAATTTGTTTTTCACCCGGCTGGTTACC
ANTGAACCtatagtctgcggccgggtcaggaaatttttttttcacccggc
tggtttccggaaacactacatctttttattttcgcctaatcaaatataaa
atttgCGTATCATCTTTGTCTTTCAAATCAGGATTGGCTCCTTTGACCAA
CAaccatctgatgacgtcatgattgttTTATCATGCTGCATAATGCAATG
GTGTGTCTTTCCATTTGTTTTTCCATTGATCAACATTTCGATGGTTTGTT
GATCGAACCTTTCCAAATAGCGAGCATTTCCATTCAAATCAACATTATGG
AGAACTTCCTTACTTTATTAATTCTTGAATGCTAgctcatttttgaaaaa
agtcactATCGAGTGTGACACATTTTTCCTTTGTTTAATTTACAAGAAAT
CCCATACCGACAACCTAACTCAAAC

Run BLAST on NCBI

transcript from alignment at scaffold_327:199936..209850+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059408 ID=TCONS_00059408|Name=TCONS_00059408|organism=Clytia hemisphaerica|type=transcript|length=9915bp|location=Sequence derived from alignment at scaffold_327:199936..209850+ (Clytia hemisphaerica)
atgtacaaacagtatgaagtaagcctgagtaagccctgaatactaaagTA
TCAACTtttaacgaacaaaacttgatttacaaacaggaatatctaaccaa
acgacgtttgatagcttgaacggtcaacttaatcttctttatgatgaacc
tatagtctgcggccgggtcaggaAATTTGTTTTTCACCCGGCTGGTTACC
ANTGAACCtatagtctgcggccgggtcaggaaatttttttttcacccggc
tggtttccggaaacactacatctttttattttcgcctaatcaaatataaa
atttgCGTATCATCTTTGTCTTTCAAATCAGGATTGGCTCCTTTGACCAA
CAaccatctgatgacgtcatgattgttTTATCATGCTGCATAATGCAATG
GTGTGTCTTTCCATTTGTTTTTCCATTGATCAACATTTCGATGGTTTGTT
GATCGAACCTTTCCAAATAGCGAGCATTTCCATTCAAATCAACATTATGG
AGAACTTCCTTACTTTATTAATTCTTGAATGCTAgctcatttttgaaaaa
agtcactATCGAGTGTGACACATTTTTCCTTTGTTTAATTTACAAGAAAT
CCCATATCGACAATCAAACTCAAACCTAACGAGTCTTTCACTCGTAAAAT
AAgacaatcaaataaaaaaaatcactttcattttttttcttataaaaaaa
ctcaaaattagcAATAGGGAATTTTATAAGAAGTTAGACGTGATTTAGAA
AGAACCTtgtaaaaacttaaaaaacacTCTGATACAGCCGATATACTGTA
TGCTTGTAAagacaagaaataaatcaaatattTAGCATTCAAGTTCTATC
tatttaaaatcataaaataaattataaataatTAACCGAAAACTTTTGAA
GATAATCGTGTTTTCTATTCATGTTTCCAAGAACATATAAATGTTCTGCA
ATAATCATTTAAGTCAGTTTTTCTGATcatatgaattaaaaaaagttatg
ttgATATACTTTTGAATGTTTAGATATAACAATTTGTTACAAAATATTAC
TAAGAATATTATACAACAGCGTACGAACAAGCACCAAAGATGACCAACAA
CCGCTCTTGTTGTCTAGACCTAAAGACAAAGATCGAAAATGTGGtgtttt
ctggaaatttttatttgttgccAGAATTTTGCTCCATTAAAGGTAAAATT
CCAAAGTGGATATTGAAACCACCTTTTTGTCATGTAAAGTTCACTTACCA
TCTTTGTCTTTCTTATCAGGATTGGTTCCTTTGAGAAACAAcaatctgat
gacgtcatgattgttTTTTTATGCTGCATAACGCAATGGTGTTTCTTTCC
ATTTGTTTCTTCCATCGATCaactttttgatggttttttgatCAAGCCTT
TCCACATAACAAACATTTCCATTCGAGCCAACATTAAAAACCATGTAATT
GCGAATAATGAAATtaagtaattaaaaatttgaaataaaatatttaaaat
ctaataATAACTAATCACCATTTTGTTTGTTCATTGATGAAACTTTCCAT
GTTTCTTCGTGGaaagtttccaaatagggaaCATATCTATGCCtatgaag
aaaatttaaactttacTTACCATCTTTGTCTTTCAATTCAGGATTGGCTC
CTTTGACCAACAaccatctgatgacgtcatgattgttTTTTCATGCTGCA
TAATGCAATGGTGTTTCTTTCCATTTGCTTCTTCCATTGATCAACATTTC
GATGGTTTTTTGATCAAGCCTTTCCACATAAGGAACATTACCATTTGAGC
CAACATTAAAAACCGTGTAATTGCGAATAATgaaattaagaaattaaaaa
tttgaaataaaatatttaaaatctaataATACCATGTTTCTTCATGGAAA
GTTTCCAAATAGCGTAAGCGAACATATCTATGCAtatgaagaaaatttaa
actttacTTACTATCTTTGTCATTCAATTCATGATTGGCTCCTTTGGTCA
ACAAgcatctgatgacgtcatgattgttGTTTCATGCTGCATAATGCAAT
GGTGTGTCTTTCCATTTGTTTCTTCCATTGATCAACATTTCGATGGTTTG
TTGATCGAACCTTTCTAAATAACGAACATTTCCATTTTAAACTAACATTA
TGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TCCTGACAAGCGAGCTGTTTACTACTCAGTGGTCAAGCTGTAACTGATTT
ATGTCTCTCATAGTTCCCTATTTAtactaaaattttttgatattttataa
tTAAACAATACAATCTTTTGTCCCATTGTTATTTAAGATGACAATGAGAA
GAATATAATAGATAATAATACAAGGGTAATAATGTGATTAATCGAATAAT
GCTTCCATCGTTCTTCATTTAATTCCTTTGTGAATTTTCCTCCAAATTTC
CGTTCTTGAATTTTTGTCCTTTTGATGACCTGCAATGGATGCAATTTAAA
TTAGGGTTTTAGAATATGTTCGTATAATTCATATGTTTATTTTCCACGGA
ATGTCGTGAATATAGACGGCTATATCTTCTTGGCATATTAAACAATTCCA
GTATTTACATATCAAGTTCCTTTTCGGTTTCTtgatttagtttttatttt
tagaccATTGTAGTTCGGTCTAGATTGGTTAGCATATTTTTTTCCGGGGA
TGATTATTAAATCTTCTCCGTCTTTGGGGTGATCCATTTCAAAGGTGATT
CTGGTTTCGGtttttgttggttgataatcTGGTATTCTTGTTACCCATTC
ATTTGCTATGTAGTAAACTTTACATATATTCTTTAGCCTGTCGTTTTCGT
CAGGTGAGCGTAGTACCCAATCgttgttttcgtttttcttttggCAGTCT
TCTCTTCTATCAAAAATGTTATAGAGGTCAAAGTAATCTCCATATTGGTC
AGCACTATCTTNTCgttgttttcgtttttcttttggCAGTCTTCTCTTCT
ATCAAAAATGTTATAGAGGTCAAAGTAATCTCCATATTGGTCAGCACTAT
CTTCTTCTCCTCGACAGCGATAAAGATATGTGGTGTCTTCTAGATAACCA
TCATCTCCACTGGCTCCTTTGAACATTCCTTTTCCTTCTTCTCCCAAATA
GATTTTTGGATTTATTCTCAAGAGTGAATCGGTAAAGATTCCGTCTGGAA
TAGAGGGGATGAGATTTCTTATGAGACTGCAGGTGGGTGCTTCACAAAAT
ATTTGTTGGAGTTTACTATTCCTTTCTCTGTGGAAGGATAGGGTTCCTTT
AGAGGCGTTGGGATGTGTAAGGTTGAAGGCAGTTTCTGTCCACTCTGACA
GGAATTCTcctttttttgtgaaagttcGTTCCAGGTTGTTACTGTTGTTA
GGTCCCAAGTAGGTGATAGTGTTTTGTTTTTCGTCATAATAATTGGGCGA
TCTGTTCAGGATTGTGTGAATTATGTTTAGTGGTAGATAGTGAGTGAACT
CGTATTGCATTTGGTTGCTGGTAAGGATTAcaattttcttgaaagtttGG
TTTTCATTGAAGTAGATTCTGAATAATATTATTCCTTTTCTGATTGGAAA
TGCTCGAATTCTTTCTGCTGTGTCAAAGTGTTCTTTTGGGATCACTCCTT
TTTCTTTTACGGTAGGTAACGTCAGTGTGGCGTTAGGCTTTCGTGGCCAT
TCGTCAGTCCAAATTAAATCTTTTCCTGTGATTTTAAAAGGCTGAAGGCT
CTTTACCTTTTTTAGCATCATTTTAAGGAAGTGGTGGAAGGCTTTTCCTT
TCCAATCACCTTCTTTTCGAGTGCAGTATGACATTTGGGTTTCTATCACT
TCGACTTTCATTTTGTCGTGATGTCTAACCAAGTGCTTTTCGATGATTTC
GTCTAATATCGCTTCCCTAGTATATGGCATTTGGGGATTTGATTTTTGGA
GCGACATTAACTTTCCTTTTACTAGTTGTCTTTGATAATATCGATTCTGG
TACTTTGCGTCGGCGTTTCTACTGATCGTTCTTGTTAGGCAGCTTAGTAT
TCTTGGTCCGAATATGTATATTGCCAGCACTGTTCCTCCTATTATAGCGA
TGGTAGTTAGCACAGCCTCTGCTGTTTTCCAGAAGCAGCTTAGGGAGTCG
TACCAGGCACATTCGTCTTTTTCAGTGTTCTTTTCTGGTTTTAAGGATCC
GTCTTTTATGTCGTTTCTTACATCATTGATTGCTTGTTTTCGGTCCTTGA
TTTCTGTGTTTATTTTGTGGTCCAGATGTTTTACGTCATGTTTAATGACC
TTGATATCTTGtgaattctggttgattttattttcatcactATTCAGTCT
TTTCTTTATTTGGTTTTGGGTTATGTTCAGTCTTGTGATGGAATGCGTGT
TTGCATCAATTCTTACGTCCAtggttttttctttttgtttaaggAGTTCT
TGTTCATTTTGGATTTTAGTTTGGTTTTTTTCTAACtcttggattttctt
ttcatctctttttcttttattcttttccAGATTCAGTTCTTTGGTTACGT
TGTTTAAGGTTTTCGTCAGGATCTTTTCCTGATCAATTATCTCCTGGTTT
TGCTCTTTCAGTTGTTTTGTTTCGTTTTGGACTTGTCctagtttttcttt
catttttaattctCTTGTTTTCCAGTAGTCCTGTCTGGTGGTCAGGTTTG
CTACTTTGTTTAGAATATTCTGGTAGTCATCCTGGAGGTCGTCCAAGTAT
TTGTTTGCCTGTTGTTGGTTCTGTCTGAGTTCGTTTTCAGATTTGGTCAG
GTTGTTATAGTCCTGGGTTAAGATTGCTTCGTTTTCTTCAATATTATTGA
TTCTTTTGGCTGCTTCTGCCCAGTTTTTTCTTAGTGTTTGTTGTTCTTTC
TCTAGCTCGTATGTTTTCAGATCTGTTTTTATCTGTCCATCTATTAAGCC
GGAGATGGTATTTCCTTCATATTGGACTGGGTTGAATTCGTCCGTAGTTT
GTCCCACATCCTTTTTTGTTAGTGTTTTGANTCTATTAAGCCGGAGATGG
TATTTCCTTCATATTGGACTGGGTTGAATTCGTCCGTAGTTTGTCCCACA
TCCTTTTTTGTTAGTGTTTTGactcaatcattttttagagaCATGGTTCG
AATCAAGGAGCTGTTTACTTCTTTTATTGTGTTGTTGTGGACTTGGAAAT
ATTCTTGTCCATTTTTGATGAAGTAATTGATAGGTGAGGTGATGGTAGGA
GATTGTTTTCGTAGCGTCCTTGTTCGAATGTCTAGAAACCATACTGGTTC
GTCTATGAGCCCTGGCCTTTTGATTTGTAGGCCTATTTCTAGTAACCGGT
TTAGTTTGAAATAAGGTGTTGTCTCCAGGCCATTATCCAACGTGTTCTGG
TTATTACCCTCCCCCTCTCCAGAGAAAGAAGGAACAAGGGTCGAGTCATA
GATTGTTATACACTAGACAAAAATCTTGTGTTATTTAAGTTCCATGAAGT
AAGAAATTATAAgatttgaaaataagaaaatgaaataatagatttaaaaa
attaacaatAACTTATCACCATGTTCAATCCAACTGTCCATTCATATTCT
GGGTTATCTGTTGCAAATTCTCGGCACGTTTGTCGCCGTTGGGCATATCC
ATTCCAACATAGATTCGATATTACGAATaataaaatcatgaaattgaaag
tttcaaataaaatattaaaaatctaaTAATAACTAATCACCATTTTGTTT
GTTCATTAATGAAACTTTCCATGCTTTCTTCATGGaaagtttccaaatag
ggaaCATATCTATGCCtatgaagaaaatttaaactttacTTACCATCTTT
GTCTTTCAATTCAGGATTAGCTCCTTTGACCAACAaccatctgatgacgt
catgattgttGTTTCATGCTGCATAATGCAATGGTGTGTCTTTCCATTTG
TTTCTTCCATTGATCAACATTTCGATGGTTTGTTGATCGAACCTTTCTAA
ATAACGAACATTTCCATTTTAAACTAACATTATGAAGANNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTTCATGGaaagtttc
caaatagggaaCATATCTATGCCtatgaagaaaatttaaactttacTTAC
CATCTTTGTCTTTCAATTCAGGATTAGCTCCTTTGACCAACAaccatctg
atgacgtcatgattgttGTTTCATGCTGCATAATGCAATGGTGTGTCTTT
CCATTTGTTTCTTCCATTGATCAACATTTCGATGGTTTGTTGATCGAACC
TTTCTAAATAACGAACATTTCCATTCAAACTATTATTATTGAGAACATCC
ttactttattaattttttaatgcTAGCTCATTTTTGAGAAAGTCACTATC
GGGTATGACACATTTTTCCTTTGTTTAATTTACAAGAAATCCCATACCGA
CAACCTAACTCAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037397	XLOC_037397	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059408-exon-scaffold_327-1491911889:199936..200506	TCONS_00059408-exon-scaffold_327-1491911889:199936..200506	Clytia hemisphaerica	exon
TCONS_00059408-exon-scaffold_327-1510915933:199936..200506	TCONS_00059408-exon-scaffold_327-1510915933:199936..200506	Clytia hemisphaerica	exon
TCONS_00059408-exon-scaffold_327-1575043694:199936..200506	TCONS_00059408-exon-scaffold_327-1575043694:199936..200506	Clytia hemisphaerica	exon
TCONS_00059408-exon-scaffold_327-1491911889:209797..209850	TCONS_00059408-exon-scaffold_327-1491911889:209797..209850	Clytia hemisphaerica	exon
TCONS_00059408-exon-scaffold_327-1510915933:209797..209850	TCONS_00059408-exon-scaffold_327-1510915933:209797..209850	Clytia hemisphaerica	exon
TCONS_00059408-exon-scaffold_327-1575043694:209797..209850	TCONS_00059408-exon-scaffold_327-1575043694:209797..209850	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_327	supercontig	scaffold_327:199936..209850 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.345235	0.502184	0.690062	0.882763	1.21725	0.522311	0.335775	0.211517	0.267288	0.592792	0	0.0572237	0.227607	0.297351	0.0833348	0.179322	0.384996	0.165985	0.0906578	0.189734	0.10506	0.990864	0.199152	0.605828	0.275856	0.202369	0.27564	0.323072	0	0.300537

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00059408 vs. Swiss-Prot (Human)

BLAST of TCONS_00059408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00059408 (transcript) - C. hemisphaerica