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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059412 ID=TCONS_00059412|Name=TCONS_00059412|organism=Clytia hemisphaerica|type=transcript|length=532bp
aaataaatgaataaataaacaaTAACGAAATAATGTCTTCAATGACCATT
TGTTTGGTAAAGAGAATGTACTGTCCAAAAGTTTGGTTCGCAACATTCTA
GTGTTCATTTGGCCGACTGAACGTAgtgtcaacaacaacaagatcAAATT
GCACTCCATTGAACGGTGGAAGTGCTTGACATGTTTCTCTTGCATCTATA
AAAGTCTGCTCCTGTGATGTGAAGTAGTACGCTGAAGtggctgaaaacaa
aaataacaaattaaatttcctcattattttgtttttctcagTTGCCTTTT
TTTTGGCACGTGATTTCTTGACACGTgtatttgtttcaattttcNATTAA
ATTTCctcattattttgtttttcttagtTGCCTTTTTTTTGGCACGTGAT
TTCTTGACAcgtgtatttttttcaattttctgtaCTGTATTCAGATATTT
AATCGGTGGAAGTTCTTGACATGTTTCTCTTGCATCTGTAAAAGTCTCTA
TCTCTCTGTCACTGTCTCTGTATCTGTCACTG Run BLAST on NCBI transcript from alignment at scaffold_327:213667..217707+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059412 ID=TCONS_00059412|Name=TCONS_00059412|organism=Clytia hemisphaerica|type=transcript|length=4041bp|location=Sequence derived from alignment at scaffold_327:213667..217707+ (Clytia hemisphaerica)
aaataaatgaataaataaacaaTAACGAAATAATGTCTTCAATGACCATT
TGTTTGGTAAAGAGAATGTACTGTCCAAAAGTTTGGTTCGCAACATTCTA
GTGTTCATTTGGCCGACTGAACATGgtgtcaacaacaacaagattAAATT
GCACTCCATTAATCGGTGGAAGTGCTTGACATGTTTCTCTTGCATTTGTA
AAAGTCTCCTCCTCTGATGTGAAGAAATACGCTGAAGNTCACTGctaaaa
tattgtgctattttttccttccccactgaattttctggctcaaaacaatg
gaattcaaatcccagtGATAACAAacaatatcaatccccattgacttttg
atccgttatttttacccccagctcaaaaaatcctaccaggtctgtgagaa
agggatgTTTCAAACTCAATGTTAAGAAAAGGGGGGTCTGTTACAAAACT
TATTTTATGTCGGACGGGTATCTTGCCCCCTTGTCATAAACGGTCGAAAA
ATACTCGAACCACAAGTTATGCTAATTCTGAAAAGGTGGCCGACTGAACA
TAgtgtcaacaacaacaagatcAAATTGTACGCCATTAATCGGTGGAAGT
TCTTGACATGTTTCTCTTGCATTTTTAAAAGTCTCTTCCTCTGATGTGAA
GAAATACGCTGAAGTGGCTTACAACAGtcgctctttgaagtgaattttct
cgagttctatgaacttttagataatgaatctttttgcattAGAAAGggga
aggataaacttaaaatttgaggggTTATTTATTAAATTAAGTCAACTTGA
TTAAAAGTTATGacctaaatgctaaaacatcacttttcaaaaaaagtcta
aaaaagacgaaaaagagGGGATTAAATTCATTCTAAGACAAAGACACAAA
AGGTTTTTTATTCATCAGGAAATGtatttccattttttccaaagcaCTTA
TTTACACGATTAATCATTCCTGCAAAAGCATTTTGAACCATTTGAGGGTC
GAGGTTAGCTGCAACATTTCTAATTGAAGCTTTCAATTGATTAAGGGTCT
GAGGTTGCAAATTTTGGGGTTGTTCCCAGATCTGCGGTTTCATGTAAGCC
CATAAAAAGAAATCACATATAGTGAGATCAGGCGATCTTGGGGGCCACTC
AACATCTCCTCTATTGCTGACCACCTTTCTGGGAAACTGACCACGAAGAT
AGCGAAGTGAAGCGTTGCTTGTGTGGGGAGTTGCTCCGTCTTAAATCCAC
CAAGACGTTGCCTTATTGATCCCAAGCCTCACAAAGTCTTGTTGAATGAC
ATTATAACACACGATTCTCATATATTCCCTTGTATCCAACCTCCCCTGAA
CAAAATGTGGACCCAACACTAATCCATTTCCTGTTAAGCCCATCCAAACC
ATCACCTGATCCGCCCCTTGCTCAAATTCCACATAGTGGTCATCGGGATG
CCATTGACCATGTTCAGAATAGTAAATAACATTACGAGTATTCACATCAG
AGTTCATGCTGAAAGTTGCCTCGTCAGAAATgatcaaatttgataaaaaa
tttgcattatTCATTTCTGAACCAGTTGCAAAAGGTTAATCTTCTTGCTG
GATCttgattttttagtttttacttCTTTACCAACACATAAGGatgaaat
tttatttccttGACGATTCGATTGAAAGTGGATCGAGTAAGGTTGACCCC
GTTCCTTCGACATGAACGACGACCATTTTGCTGTAAAGATCTTCTAACCA
TATTCTTGTTCGCCTGTGTCATCACAGTGGGCCTTCTGCCACTTCGACCT
TTGTTGAGGTTGTGGCAAGTTCCTTCTCTACcaaattttcgaaagttttt
gaGTATGGCTTCTCTTGTCGGAGGAGGAACATTGGGCCATTGGTTAGGCC
ATCGTCTCAGTACTTTTGCGGCATTATTTATGCGTGCAAACTCAATACAC
ACCCAAGTTTTTTGAGGAATAGTTAGGCGAGGCATTTTTCTCAACACACT
TGATACAAGCTTTTTCCTTCTCACTCTCAACAATGTGTacaaaaaaagct
ttgaaaactCTTGGTAAGATTTTGATGAATGTTTGGATCTCGTGCCCCTT
GATTATGCCCATGGGAGCTCGTTAAATtagacaaagaaaagaaaaggaat
taacaataaaataaagacACCTTAAAGAACTGTATGGAAAAAACTTTGAG
CGTAAATAAATTGGCAACAGAAGtgctttctttatgatgatttgATCTCc
tcttttttcgtctttttttgacttttttgaaaagtgatgttttagcattt
aggctataacttttgatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtttaataaatgacccctcaaaatttaagtttatccttcc
tctttccaatgcaaaaagattcattatttaaaagttcatagaactcgaga
aaattcacttcaaagggcggaactttttttctgggacacccggcaCTTCC
TTTGTTTTCCTTCATGGACTTaggttttttgttgttttcaccATTGACAC
CAAAAGCTGTGAACAAAATATTATGTTTCCATAATAAAGTAAATAAGACG
TAATGTAaccattattttttaaatacttaAAATACTTACTTACGTTCGTT
TAAATTTGTCTGTTCCATTGATCAACATTTCGATTGTTTGTTgaccaaat
ttttccaaatgacGAACTGTTCCATTCATACCAACCCAATGAAGAACGTT
CCAACCTTCATCATCCACGAGTGAAACATCCTGATAATATTCCATCAAGT
GAACGAAAACGTTGCCGTTAACAATATATTTGTATTagggaatttatttt
caaagtcttttagGAACGAATGAATTGTCAGgctttttttatttacaatt
tCCATTATTTTCTTGTACGACGACAAAAATGTACTGTTGTGAAGATTAGA
ACCGGTTACTTAAAATATGAAATCAACAAATATGTATCATAACAAATATG
TATCATAACAAATGAAAATCACATGATAGAACTTTTGGCCATCACTTCAG
ACAATCTTGAAAGGTTTagtttctttttcagtttttgcaGAAAGTTTGCT
GAATTATGTCCCGTAGTGATTCTTTTCTATTGACAGTATTGGAAGTTCGT
TGTCTCAGCTACATCTTGGATAGCAGCCCGCCATGTTGTTAGTAGTCCAT
TTTTTTGTCCAATTATAATGATTAATTGCCAGGAGAGCATTGCACAAAAC
AGATAAAAGCTAAGAAACATTAAAACATATTTATTTGCTCTTATTACAAA
CCTATGATGCTAAAGGCTTTCGGGGGTAGCCCCTCCATACCCATCAGAGC
AACACAACAAAATcgcaaacaaataaataaataaataaataaataataat
gaaataaatgaataaattaataaataaacaaTAACGAAATATTGTCTTCA
ATGACCATTTGTTTGGTAAAGAGAATGTACTGTCCAAAAGTTTTGTTCGC
AACATTCTAGTGTTTATTTGGCCGACTGAACGTAgtgtcaacaacaacaa
gatcAAATTGCACTCCATTGAACGGTGGAAGTGCTTGACATGTTTCTCTT
GCATCTATAAAAGTCTGCTCCTGTGATGTGAAGTAGTACGCTGAAGtggc
tgaaaacaaaaataacaaattaaatttcctcattattttgtttttctcag
TTGCCTTTTTTTTGGCACGTGATTTCTTGACACGTgtatttgtttcaatt
ttcNATTAAATTTCctcattattttgtttttcttagtTGCCTTTTTTTTG
GCACGTGATTTCTTGACAcgtgtatttttttcaattttctgtaCTGTATT
CAGATATTTAATCGGTGGAAGTTCTTGACATGTTTCTCTTGCATCTGTAA
AAGTCTCTATCTCTCTGTCACTGTCTCTGTATCTGTCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059412-exon-scaffold_327-1491911889:213667..213788 | TCONS_00059412-exon-scaffold_327-1491911889:213667..213788 | Clytia hemisphaerica | exon |
| TCONS_00059412-exon-scaffold_327-1510915933:213667..213788 | TCONS_00059412-exon-scaffold_327-1510915933:213667..213788 | Clytia hemisphaerica | exon |
| TCONS_00059412-exon-scaffold_327-1575043694:213667..213788 | TCONS_00059412-exon-scaffold_327-1575043694:213667..213788 | Clytia hemisphaerica | exon |
| TCONS_00059412-exon-scaffold_327-1491911889:217298..217707 | TCONS_00059412-exon-scaffold_327-1491911889:217298..217707 | Clytia hemisphaerica | exon |
| TCONS_00059412-exon-scaffold_327-1510915933:217298..217707 | TCONS_00059412-exon-scaffold_327-1510915933:217298..217707 | Clytia hemisphaerica | exon |
| TCONS_00059412-exon-scaffold_327-1575043694:217298..217707 | TCONS_00059412-exon-scaffold_327-1575043694:217298..217707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:213667..217707 + |
Blast
The following BLAST results are available for this feature:
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