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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059424 ID=TCONS_00059424|Name=TCONS_00059424|organism=Clytia hemisphaerica|type=transcript|length=4137bpRun BLAST on NCBI protein sequence of TCONS_00059424-protein >TCONS_00059424-protein ID=TCONS_00059424-protein|Name=TCONS_00059424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=974bp MPVFHTKTIESILEPVANQVSQLIVIHDQLGEGQYIIAHNLADNVKNVSARun BLAST on NCBI transcript from alignment at scaffold_327:8578..23398- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059424 ID=TCONS_00059424|Name=TCONS_00059424|organism=Clytia hemisphaerica|type=transcript|length=14821bp|location=Sequence derived from alignment at scaffold_327:8578..23398- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_327:8578..23398- >TCONS_00059424 ID=TCONS_00059424|Name=TCONS_00059424|organism=Clytia hemisphaerica|type=CDS|length=55575bp|location=Sequence derived from alignment at scaffold_327:8578..23398- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059424 vs. Swiss-Prot (Human)
Match: VINC (Vinculin OS=Homo sapiens GN=VCL PE=1 SV=4) HSP 1 Score: 336.265 bits (861), Expect = 5.691e-96 Identity = 198/480 (41.25%), Postives = 301/480 (62.71%), Query Frame = 2
Query: 233 MPVFHTKTIESILEPVANQVSQLIVIHDQLGEGQYIIAHNLADNVKNVSAAVNNLVQAGKDTVAKANDDIFRREMPPTFVKVEQASSALVESTQLLTQDVQSKRGQALLISGARGILNGTSALLLTFDDHEVRKILKKCRNVLDYIPVAEVVESLPDTVTYIKNLSPGLLQMAKAVDNRIPDLTHVTHAELLQKHVASVKELATNLPNSMRAYIAA-SQKNVGRAEAQENRNFIVGKMCDDIIEIMRVLQLKVDDE--YDLEDPTNLMRKAQHRMVEKMKLAKEWLANPDGEANGLGERAIRDIIKQARQVGMLANDQKIKDL---CDDLDGLVDKLSALRAKGMGNTPEALALAKEIDGKLEILAKLVDDAIKREVAAGNRLPAATTSGQFEQALNWIDDPRYNPNSVGKRAIDALLADGRRLAENLSGP-EKQELLDTMANIERLTKQLEDLKRAGKGNTPEAQRIAAELKRELEKLK 1651
MPVFHT+TIESILEPVA Q+S L+++H++ GE +L V V AAV+NLV+ GK+TV D I +R+MPP F+KVE A + LV++ Q+L D S + LI G+RGIL+GTS LLLTFD+ EVRKI++ C+ +L+Y+ VAEVVE++ D VTY KNL PG+ +MAK +D R +LTH H +L + +VKEL L ++M+ ++ + KN G EA +NRNF V KM +I EI+RVLQL DE + +D T M++A + K+ AK WL +P GE+AIR I+ +A +VG L ++ +++ C L + D+++ LRA+G G++P A+ A+++ L++L V++A ++ A N + + + + A NW+ DP P G+ I LA+ R++AE P E+ ++L ++ I LT +L DL+R GKG++PEA+ +A ++ L+ L+
Sbjct: 1 MPVFHTRTIESILEPVAQQISHLVIMHEE-GEVDGKAIPDLTAPVAAVQAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDEAEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWDEDAWASKD-TEAMKRALASIDSKLNQAKGWLRDPSASPGDAGEQAIRQILDEAGKVGELCAGKERREILGTCKMLGQMTDQVADLRARGQGSSPVAMQKAQQVSQGLDVLTAKVENAARKLEAMTN--SKQSIAKKIDAAQNWLADPNGGPE--GEEQIRGALAEARKIAELCDDPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQ 474 HSP 2 Score: 276.559 bits (706), Expect = 2.367e-76 Identity = 201/561 (35.83%), Postives = 303/561 (54.01%), Query Frame = 2
Query: 1025 MRKAQHRMVEKMKLAKEWLANPDGEANGLGERAIRDIIKQARQVGMLANDQKIKD----LCDDLDGLVDKLSALRAKGMGNTPEALALAKEIDGKLEILAKLVDDAIKREVAAGNRLPAATT---SGQFEQALNWIDDPRYNPNSVGKRAIDALLADGRRLAENLSGPEKQELLDTMANIERLTKQLEDLKRAGKGNTPEAQRIAAELKRELEKLKGILQRGAVRGVVDNFKDILSPIKQLAKAAKAPVDTPNREQDFEEKAGAFEYHTSKMVDSAEQTAIHGKHATKQLVDNIHTATKELAELTPQVSHAGKLLLLNPGDKVIEANFDMLKQKWENKAEEVMGLVDAATDAADFVKATEDAMRAE---QKVAFDGLQKENPAVVVAKGGNMARMGNRVAQVANAEAENSEDPEFKHXXXXXXXXXXDSIKPLVASTKNVALNPRHQPIQIEFKQTSEGLIGRVVDVRNALXXXXXXXXXXXXXXXXXXXLDFEVPDISDIKLQDE-GPARPP---PPVVEGIINADESRELHSMLESAPDADNR-MAFAAHQLHVEANKW 2662
M ++ + +K+ A+ WLA+P+G G E IR + +AR++ L +D K +D ++ L KL+ LR +G G++PEA ALAK++ L+ L + A+ N PA G+ EQA WID+P + VG+ AI L+A+G RLA + GP +Q+LL +++LT QL DL G+G +P+A+ +A++L+ L+ LK +Q + V D F D +PIK LA AA AP D PNRE+ F+E+A FE H+ K+ +AE+ A G A K V+ I + K ELTPQV A ++LL NPG++ +F+ +K +W + E++ GLVD A D + A+E+A++ + KVA +Q P ++VA ++AR NR+ VA E ENSEDP+F+ AV +A+ +S +I P+V K VA N +Q F + ++G V VR A +P P P PPP + ++L DE P +PP V E ++ + A + N+ M AA QLH EA KW
Sbjct: 377 MTNSKQSIAKKIDAAQNWLADPNGGPEG--EEQIRGALAEARKIAELCDDPKERDDILRSLGEISALTSKLADLRRQGKGDSPEARALAKQVATALQNLQTKTNRAV------ANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGHRLANVMMGPYRQDLLAKCDRVDQLTAQLADLAARGEGESPQARALASQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPPDAPNREEVFDERAANFENHSGKLGATAEKAAAVGT-ANKSTVEGIQASVKTARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDTKSLLDASEEAIKKDLDKCKVAMANIQ---PQMLVAGATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEPDFPPPPPD-------------LEQLRLTDELAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEVINQPMMMAARQLHDEARKW 912 HSP 3 Score: 152.14 bits (383), Expect = 6.149e-37 Identity = 93/201 (46.27%), Postives = 125/201 (62.19%), Query Frame = 2
Query: 2525 PPPPVVEGIINADESRELHSMLESAPDADNRMAFAAHQLHVEANKWEEDGNELIQLARQMALLFAKMSKFITDEEYFLTQPKKMLIDTAKQIAKVSSEFSKKAREISHQCPDKRMKHDLNLTIDRIPTISTQLKILATVKATMFG---ANDPQADFEATEMLVGCAENLMGSARSVVKDCEAASIKIRTGAGKVQRWKRDT 3118
P PP +E D EL M + P + + AA LH EA KW GN++I A++MALL A+MS+ + + K+ LI AK IAK S E ++ A+E++ QC DKR++ +L +RIPTISTQLKIL+TVKATM G +D +++ +ATEMLV A+NLM S + V++ EAASIKIRT AG RW R T
Sbjct: 940 PVPPDMED----DYEPELLLMPSNQP-VNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGG----SGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESE-QATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKT 1130 The following BLAST results are available for this feature:
BLAST of TCONS_00059424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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