TCONS_00059436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059436
Unique NameTCONS_00059436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059436 ID=TCONS_00059436|Name=TCONS_00059436|organism=Clytia hemisphaerica|type=transcript|length=1843bp
CGCAAGAACAAGAATTTTCTATAACTACACgttcttcatttttgaaatTG
CTCGCACAAACTGGCTACAAACAGACGACACAACGCTTCATTAATGAGCT
ACTGGCCGCTGATCAAGCGACATCAACATCTACTACACAACGACAAATTG
TTGTCAACAAGCTCAAAAACAAGATGACGCTTTTCATGAGCAAACCATAC
GATACAGGAGGACCCTTATTATCACCCGTCAACCTTCAAAAAGAATTCAT
TGCTCTTAAACAGGAACGTGATTCAAACGATCGCCAATCGGGATACAtcc
atgatgacgtcattattggaGGACACCATATTGGGGACCATGATAAAGTT
CTTTTTCATGACGACATCCGAGATCGTAATTTATTTGACATGCCGATCGT
CACGACCAACGAATGTTCTATAAACTCTCTCTATCACACTAACGAACCTC
AAACACCGACAGGCCCACATAATCACCATACAACCCCTAGTTTCGTCACA
TACCAAATCTCTTCAAACACGAACCAATCAAATGGCTGGAACAACCTTAT
GGATGATTACTCGCATCCTGGAGGCGACACGAATGACCTTCACGATTCAT
CGGAGACTTTCTCTTCTTTCAATGATCCTGTCTTCACGTTTAAAGACACG
GGCGACCAACACAACGCTGATCCAACCTCGCCACCACACCTTTCAAAACC
ACATTCGCTTCCAGCTCTTATCCTTACTGATAAATCGCCATCTCGTTACA
GCGATCATACTTCACCCACAGGTGTTCCGTTAACGCCCTTGACGCCTCTT
GGCGGTGTCGTTCCATTCGGAAGCCCCCCTCACAACAGTGCTTTCTCTCA
ACCGACCACTAATCGTGATTTATACAAAGACTTATGTTACGCGACCAATC
GGCAACAAGAATACCCGCCCATCTCACCAAATGAAGAAATTCCGCCTCAG
CTCCCACCCCCGATGATTCATCATCAGCAACGAAGCCCGAGTTTCAACGA
AATCCTACCGTCCTCTCAAAATCAAGTTGGTCGTCCAAATAACACtcaag
aaaatgatattttcataCAACAACAGACTCCTCGAGGAGGCGGTGGCGGG
CTTTGTAGTCCTAATGGTCCGCCTACCCAATACATCAAATTGAATTCGTC
TTATCAGCAACCGTGTGGAAATAACACAAGTTCAGTTTTAAATAGTTTAT
ACCAACAGGAACATAACATTAACATGCAATTCGGTGGTAACATGTCAGGA
GTTAGTTTCCTAACCACTGGACCCCCACCTAATGATAATATCGACATTAG
CGCAGGTATGGGACCCATATCGCCGCACAACGGTGGCCCATTTATGccag
aaaaaatcaaagttagTTGTAATGAAGACATAGTCAATGATTTGAATTCA
AAGAAAGTTGGAAATAAAGGATATTTATGTGAGTTGTGTGGGAAGTTGTA
CACAAGGAAGTACGGACTGAAAATTCATATGCGAATCCATACCGGTTTTA
AACCTTTACGATGTCAGTATTGTCAAAAACGTTTTGGAGACCCTTCGAAC
ATGGCTAAACATATTAGACTACACGCTGTTGGTGATACTCCGTATAAATG
CCCTTATTGCGCAAAGGTTTTAGTACGACGCCGAGATTTAGAGCGCCACA
TTAAATCGCGTCATCCGCAGGGGTGATGTCTTTCTTGTATATATAAAAGA
ATTTTATTAGATTTATTGGGGATTTATATTcccttgatttttttattttt
aaccctttaagtgccgatgtcgtatatatacgacatgggctatataggag
ggcgaagccctcctgtaatgcccagtttgagttagaaatcgtt
Run BLAST on NCBI

transcript from alignment at scaffold_327:325479..330350-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059436 ID=TCONS_00059436|Name=TCONS_00059436|organism=Clytia hemisphaerica|type=transcript|length=4872bp|location=Sequence derived from alignment at scaffold_327:325479..330350- (Clytia hemisphaerica)
CGCAAGAACAAGAATTTTCTATAACTACACGTTCTTCATTTTTGAAATGT
AAGACAATTTTTACGCATCTCTCAGTCTACAGGCTGAGACAGACAATGAC
CTTAATTATAATAGGGTAAATTTCAGTAAGCTGTCAGACCAATTTTATAA
AAACAATGAACCAGGCTTAAAGATTACTATACTATATACCAAAAGAAGAA
AATAATTTGTGAACGACGCTCAGCCTTGATTCGCTGGAGTTAAAGTATCT
TACGGTATGGGCTTTATGTAATATAAAAGTGGAGAGTAAACTTAAAATTT
GCCCAAAATAGTAAGGTGAGATCTTAGAGCAGTTTGTGGCCCATAGGGCT
AGAGAAATACTTTTTATTGCTTAAATTTTGTTGAAAAACTTTTGTTTATG
GGCCACTCACATATCGATGTTTCACATGTCTAACGTCAAATTGACGCGAA
GGGGTGTGGGGGTCGAGACGCTAAGAAAATCAATCAAAACATCGGATCTT
CGGGGCTGGTTGAATTCTAATTTTTCTAACGTTAAGCCAGATATTTTTTA
TTTTGTTAACTTCTCTCGCTAAGTATAGTCACGGTATTTTTCATGGTTTT
AGCACAAAAATTGGTGTCAAGACGAGACGTGCCAATCCATTTTCGAAATT
AAAAAAAAAAAAAAGGTTGCTTGGTTGCATCGTGTAAAATAGATGATATT
ATCCTCGCAACTTTTTAATGGTTAATGTGTGAAAAGAACAAATTACGATT
TCATCGATTATCGGTGGCTGACGCTAAGGGTAGGGGGTTAAAGGTTTTTG
ACATAGCGTTGGAATGACACTAGTTATGGGAAAATCGATATGTAAGTGGC
CTTTTTAAAACATCTTATAAAGAAAAATAAGGCCCAAAAACACCGAGAAA
TAGGAATATTTTAAAATCTATAAGAAAATTTAGGCTGAAATATAGGGAAA
ATAAGGACATCATAAGAACATGGGAATAGCCTGAGAATTTAAAAGATTAT
CTAATCTTGCTCAAAATTATCTGGATTCATAAGAAACCTTCGTAACTGAA
ATGCACGTTGTTGTTTTCATAAGGAACCTTAACTTGGCTTCGAGCCTGGT
GTTCCTTATATTTCCAGAGAATCTCAGCCTCGAGGTTTCTTATCGAGTTC
CTTATTTACTTAGCTGCTAAGCTTGGACTGATTTGATGCTGTGTTCAACA
ACTAACATTACATTATACAAAAAAAAGACGTCCATTGAATGTTGTTTCAT
CAATATTTTGATGATATTTTGAACTGTTTTTGTGAATCTGTGCAAGTTCA
AGTTTAATTCTTACTGTTCATTCACTTGTTTTCTTATCCTCAGCCTAGGC
AGTTTCTTAACAATTCCTTATGTTTTGGACCATTTTCAGTCTCAAGTTCC
TTATAAACGTGTTCCTTATAAAAAAACGTGTAATTCTGCAAGCTCATTTG
GAGAATTGTGTTTCGCCCTAATATGCAGACAATATTCACATTTATGAAAT
CGCGAAAATTAAGCCGATCAAACGAGCACTGTAATCTCCAGCAGTGCTTG
GATTAATTTGCCACATTTGCTGCATCAACTTCGGGATCGACTTTCACTGT
GCTTACACAACTATGAAAGTTAATTGACCGCAGGAGTATTTCTATGTTGA
AGGCAGATCAAAGACTTTTTTTTACTGTTGACTACAAAACTACCGTACAC
GTTTTTTTTATAAGAACATCCAAAATTTTTGATGCCTTCGGATGTTCTTA
ACTTTTTGAGTTTTAAGCCCGGGGGGGGGGGGACTTAGGCAAAAATGGAT
GATAGGTATGTGCGGACGGTAAGGGATATACCCCTCATTCGCCAACCCTA
GTGTCCCCCCTCCGGGGGTTTTAAGCCTAAAAATAGTCTTAATATGTTCT
TATTCTTCCTAAGAAATACAGTAGATTGTTTTTGAGTCTGTAAAGCCTTA
AAAGGGCCCTTAAAATGTCCTAAACTTGTTCTTAAGATTTTGGCCATCGA
AGCCTTGTGTTCTTATATAGTTTGTTCTCTTAAAAAAACGTGTATTCTTT
TTTTTTTTATCACTCTGACTTTTTAAATTGGTCTCGCTTATCCGTTTTTT
AGTGAAAAAAAAAGAAGATATTTCAGGCTTTATACCCGATTTTTACTACA
TAAACCCACCGTCAAATTATTCGAAATTCAAAAATTCCGGGCTCAGCTTA
GTTCTTAAATTGCTCCTATATATGACGGTTTTGAGCCTCACTGTGCTAGT
GTGGAATTTTACAGAATCTCCTTTTTCCTCGTAGTAAAATGGTCCTTTCT
TTCAAGGTAATTCAAGTCTCAGCAATTTTTAGTTTAGAGAGCTTATGGGA
GTGGTTTTTTGACATGAAAATTTCATCAATTCATTGAAATAAACGTTTTG
TTTTATATTTTGTTTCTCATAAGAGATTGAGCATGATTTTGCTAGAAGAA
AGAATTTGTTTACTCACGTTTTGCAATATATTATAAATAAAACGAAAAAT
TAAGTGAAAAAAAAAAAGATGTTCAAGCTCCTTTTCAGCATTTTAGTAAG
ATAGTGCGCCAAATTCTCATAAATTTTCCGGGAGAGTTTGCACTATTTTC
CGTCTTGATTAGCCAAGCTACGTCTTGATTTGAGATCTTCGTATGAAAAA
GTCGAAAATATTTTATTAGACCAATTATACTTCAAAACGTAAAACAATTT
CCCCTTCACATGTCAAAAAGAAATCTTTTCCATGTAAAGCTGGTGCAACT
TTCAAAGAAAGACAAAAGAGAACTCCAGCAAACAAATTAATCTGATTGGT
TTAAATTTCAAAACTCGTGTCCACACCCTTTTTGAGTATAGCTGTATTGT
TAAACAATGAAAACAAAAAATCTTTTTTTTTTTTTGCGTTTGAAAAATAC
TACGACGAACTCAAAAAATTGTATTTTCACAAGATTTCTCAATTTTGAAC
TTTTTGATTTTCTGTTTTGCTTTTTAGAATTTTCATTGAAGAAAATTTCA
TTCACCTATTATAGAATTTCTCTTCTTTAGTTTTAACTACGTAGATTTTA
TATACGATCCTTGTCTACTCTCTTTAGTGCTCGCACAAACTGGCTACAAA
CAGACGACACAACGCTTCATTAATGAGCTACTGGCCGCTGATCAAGCGAC
ATCAACATCTACTACACAACGACAAATTGTTGTCAACAAGCTCAAAAACA
AGATGACGCTTTTCATGAGCAAACCATACGATACAGGAGGACCCTTATTA
TCACCCGTCAACCTTCAAAAAGAATTCATTGCTCTTAAACAGGAACGTGA
TTCAAACGATCGCCAATCGGGATACATCCATGATGACGTCATTATTGGAG
GACACCATATTGGGGACCATGATAAAGTTCTTTTTCATGACGACATCCGA
GATCGTAATTTATTTGACATGCCGATCGTCACGACCAACGAATGTTCTAT
AAACTCTCTCTATCACACTAACGAACCTCAAACACCGACAGGCCCACATA
ATCACCATACAACCCCTAGTTTCGTCACATACCAAATCTCTTCAAACACG
AACCAATCAAATGGCTGGAACAACCTTATGGATGATTACTCGCATCCTGG
AGGCGACACGAATGACCTTCACGATTCATCGGAGACTTTCTCTTCTTTCA
ATGATCCTGTCTTCACGTTTAAAGACACGGGCGACCAACACAACGCTGAT
CCAACCTCGCCACCACACCTTTCAAAACCACATTCGCTTCCAGCTCTTAT
CCTTACTGATAAATCGCCATCTCGTTACAGCGATCATACTTCACCCACAG
GTGTTCCGTTAACGCCCTTGACGCCTCTTGGCGGTGTCGTTCCATTCGGA
AGCCCCCCTCACAACAGTGCTTTCTCTCAACCGACCACTAATCGTGATTT
ATACAAAGACTTATGTTACGCGACCAATCGGCAACAAGAATACCCGCCCA
TCTCACCAAATGAAGAAATTCCGCCTCAGCTCCCACCCCCGATGATTCAT
CATCAGCAACGAAGCCCGAGTTTCAACGAAATCCTACCGTCCTCTCAAAA
TCAAGTTGGTCGTCCAAATAACACTCAAGAAAATGATATTTTCATACAAC
AACAGACTCCTCGAGGAGGCGGTGGCGGGCTTTGTAGTCCTAATGGTCCG
CCTACCCAATACATCAAATTGAATTCGTCTTATCAGCAACCGTGTGGAAA
TAACACAAGTTCAGTTTTAAATAGTTTATACCAACAGGAACATAACATTA
ACATGCAATTCGGTGGTAACATGTCAGGAGTTAGTTTCCTAACCACTGGA
CCCCCACCTAATGATAATATCGACATTAGCGCAGGTATGGGACCCATATC
GCCGCACAACGGTGGCCCATTTATGCCAGAAAAAATCAAAGTTAGTTGTA
ATGAAGACATAGTCAATGATTTGAATTCAAAGAAAGTTGGAAATAAAGGA
TATTTATGTGAGTTGTGTGGGAAGTTGTACACAAGGAAGTACGGACTGAA
AATTCATATGCGAATCCATACCGGTTTTAAACCTTTACGATGTCAGTATT
GTCAAAAACGTTTTGGAGACCCTTCGAACATGGCTAAACATATTAGACTA
CACGCTGTTGGTGATACTCCGTATAAATGCCCTTATTGCGCAAAGGTTTT
AGTACGACGCCGAGATTTAGAGCGCCACATTAAATCGCGTCATCCGCAGG
GGTGATGTCTTTCTTGTATATATAAAAGAATTTTATTAGATTTATTGGGG
ATTTATATTCCCTTGATTTTTTTATTTTTAACCCTTTAAGTGCCGATGTC
GTATATATACGACATGGGCTATATAGGAGGGCGAAGCCCTCCTGTAATGC
CCAGTTTGAGTTAGAAATCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037413XLOC_037413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059436-exon-scaffold_327-1575043694:330303..330350TCONS_00059436-exon-scaffold_327-1575043694:330303..330350Clytia hemisphaericaexon
TCONS_00059436-exon-scaffold_327-1575043694:325479..327273TCONS_00059436-exon-scaffold_327-1575043694:325479..327273Clytia hemisphaericaexon
TCONS_00059436-exon-scaffold_327-1510915933:330303..330350TCONS_00059436-exon-scaffold_327-1510915933:330303..330350Clytia hemisphaericaexon
TCONS_00059436-exon-scaffold_327-1510915933:325479..327273TCONS_00059436-exon-scaffold_327-1510915933:325479..327273Clytia hemisphaericaexon
TCONS_00059436-exon-scaffold_327-1491911889:330303..330350TCONS_00059436-exon-scaffold_327-1491911889:330303..330350Clytia hemisphaericaexon
TCONS_00059436-exon-scaffold_327-1491911889:325479..327273TCONS_00059436-exon-scaffold_327-1491911889:325479..327273Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:325479..330350 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.954814	0.476471	2.35703	1.01804	6.65454	7.0452	0.534752	7.28751	0.00143313	0.489288	2.06624	1.46257	2.42627	0.390189	2.64511e-05	1.76018	1.01176e-07	1.89957e-07	3.00969e-05	0	0	1.70113	0.281651	1.51442e-09	2.74915	2.43703	1.40911	0	0	0.420001
Blast
[Close]
BLAST of TCONS_00059436 vs. Swiss-Prot (Human)
Match: PRD13 (PR domain zinc finger protein 13 OS=Homo sapiens GN=PRDM13 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.514e-36
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 3 
Query: 1419 GYLCELCGKLYTRKYGLKIHMRIHTGFKPLRCQYCQKRFGDPSNMAKHIRLHAVGDTPYKCPYCAKVLVRRRDLERHIKSRHP 1667
            G+LC  CGKLY+RKYGLKIHMR HTG+KPL+C+ C + FGDPSN+ KHIRLHA G+TPY+C +C KVLVRRRDLERH+KSRHP
Sbjct:  572 GHLCLYCGKLYSRKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPYRCEFCGKVLVRRRDLERHVKSRHP 654
The following BLAST results are available for this feature:
BLAST of TCONS_00059436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRD131.514e-3674.70PR domain zinc finger protein 13 OS=Homo sapiens G... [more]
back to top