TCONS_00059478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059478
Unique NameTCONS_00059478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059478 ID=TCONS_00059478|Name=TCONS_00059478|organism=Clytia hemisphaerica|type=transcript|length=604bp
ttctcTTCCTTTCTTGATATCACAATACTAGAAAAttttatagctttttt
atttccatACTTATAAGTCCGTGTAGAAGATTATCTCATTCTTACTCAGC
TACAATTTCAGacctttttaagtttttcacAATATAACTTTggtgtttct
ttcatttcattgttgacTCTAAcatgaataaaaattttttttgggaactA
ACTTTATAAATTGgtcatttttcagcatttttcaagttttacatAAATTT
TATAATTGCTAATAGGGTCTGGCAGGGTGTTTCAATGACATTACCTCTTT
GAGTAGAGAGCAATCTCTACTGAAATTAAATCAAGTTTTTTTTCTGTTCA
ACTATCTTCTATCAGGAGATTTGGGTTTGATATCTGATTTAcatgttttt
cataaaaatagtTTCTTTTAGGCTGATAGGGGACTATTAGAAATCTTGAA
TTGAgagatatattttttatttttcatatgtTGTGTTCATGGAAAAATTA
CATGTTTTATTCAAATGatctatttttctcaaaaatcttgaCAGTTAAAA
tgcttttcaaaagaaaaaatttagttTTACCTTAATACTATTGGTAGTTA
TGTG
Run BLAST on NCBI

transcript from alignment at scaffold_327:452128..452731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059478 ID=TCONS_00059478|Name=TCONS_00059478|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_327:452128..452731 (Clytia hemisphaerica)
CACATAACTACCAATAGTATTAAGGTAAaactaaattttttcttttgaaa
agcaTTTTAACTGtcaagatttttgagaaaaatagatCATTTGAATAAAA
CATGTAATTTTTCCATGAACACAacatatgaaaaataaaaaatatatctc
TCAATTCAAGATTTCTAATAGTCCCCTATCAGCCTAAAAGAAactatttt
tatgaaaaacatgTAAATCAGATATCAAACCCAAATCTCCTGATAGAAGA
TAGTTGAACAGAAAAAAAACTTGATTTAATTTCAGTAGAGATTGCTCTCT
ACTCAAAGAGGTAATGTCATTGAAACACCCTGCCAGACCCTATTAGCAAT
TATAAAATTTatgtaaaacttgaaaaatgctgaaaaatgacCAATTTATA
AAGTTagttcccaaaaaaaatttttattcatgTTAGAgtcaacaatgaaa
tgaaagaaacaccAAAGTTATATTgtgaaaaacttaaaaaggtCTGAAAT
TGTAGCTGAGTAAGAATGAGATAATCTTCTACACGGACTTATAAGTatgg
aaataaaaaagctataaaaTTTTCTAGTATTGTGATATCAAGAAAGGAAg
agaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037441XLOC_037441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059478-exon-scaffold_327-1491911889:452128..452731TCONS_00059478-exon-scaffold_327-1491911889:452128..452731Clytia hemisphaericaexon
TCONS_00059478-exon-scaffold_327-1510915933:452128..452731TCONS_00059478-exon-scaffold_327-1510915933:452128..452731Clytia hemisphaericaexon
TCONS_00059478-exon-scaffold_327-1575043694:452128..452731TCONS_00059478-exon-scaffold_327-1575043694:452128..452731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:452128..452731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.191427	0.115474	0.108105	0.151374	0.656255	0.54598	0.538359	0.238938	0.310174	0.153003	0	0.0674253	0.138218	0.286433	0.599462	0.434201	0.635364	0	0	0.192865	0.430319	0.123157	0.525746	0.19938	0.203137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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