TCONS_00059479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059479
Unique NameTCONS_00059479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059479 ID=TCONS_00059479|Name=TCONS_00059479|organism=Clytia hemisphaerica|type=transcript|length=619bp
TGAAGATCAGGgaacttaaagggataatcagatgacAAATTAAATTTGGC
TTATAGACATCTTCCATGGTCTGAAgtaaaacccaaaaatattttagccc
aattattttcaaaagtcgtTGCCTGTTTGAGCAATACGGTATGGTAATTT
ACTTGTCATCTGTCAAGGCATTGTGCTTTATTTTAAGGACCCTCAGGGTT
TGAATTAAAAACTTTGTGAATTGTGAATCACAGAGTCAACTTTAgctctt
ataaagaaaatcacGAATCAAAAGCAACAATCCATTGTCGTTTGaagctt
caaaatttcaagaagtTCATTCAAACCACTTATAATGCGCAACAAATTCT
ATTTGCCCAAACCATGATGCGTTGGCGtaaccaaaatattaaaatgaaaG
ATTGGCAGGTTGTCGTTTACATTGTTGATTTACATTAGAATTGTGAAGTC
tattctaaccaatagaatgtcttGGTGTATAGAtaaataaatattcaatt
tcattttggttCAATTGTATATAATAAAAAGTTTATTTATGTTCTGaatt
catttttgtaaaaacgttttcatatttcaaaataagtTCTAAGCACAGGG
ATGACCCACTATGACGTCA
Run BLAST on NCBI

transcript from alignment at scaffold_327:492024..492642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059479 ID=TCONS_00059479|Name=TCONS_00059479|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_327:492024..492642 (Clytia hemisphaerica)
TGACGTCATAGTGGGTCATCCCTGTGCTTAGAacttattttgaaatatga
aaacgtttttacaaaaatgaattCAGAACATAAATAAACTTTTTATTATA
TACAATTGaaccaaaatgaaattgaatatttatttaTCTATACACCaaga
cattctattggttagaataGACTTCACAATTCTAATGTAAATCAACAATG
TAAACGACAACCTGCCAATCtttcattttaatattttggttaCGCCAACG
CATCATGGTTTGGGCAAATAGAATTTGTTGCGCATTATAAGTGGTTTGAA
TGAacttcttgaaattttgaagcttCAAACGACAATGGATTGTTGCTTTT
GATTCgtgattttctttataagagcTAAAGTTGACTCTGTGATTCACAAT
TCACAAAGTTTTTAATTCAAACCCTGAGGGTCCTTAAAATAAAGCACAAT
GCCTTGACAGATGACAAGTAAATTACCATACCGTATTGCTCAAACAGGCA
acgacttttgaaaataattgggctaaaatatttttgggttttacTTCAGA
CCATGGAAGATGTCTATAAGCCAAATTTAATTTgtcatctgattatccct
ttaagttcCCTGATCTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037442XLOC_037442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059479-exon-scaffold_327-1491911889:492024..492642TCONS_00059479-exon-scaffold_327-1491911889:492024..492642Clytia hemisphaericaexon
TCONS_00059479-exon-scaffold_327-1510915933:492024..492642TCONS_00059479-exon-scaffold_327-1510915933:492024..492642Clytia hemisphaericaexon
TCONS_00059479-exon-scaffold_327-1575043694:492024..492642TCONS_00059479-exon-scaffold_327-1575043694:492024..492642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:492024..492642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24981	2.44706	1.46962	1.24609	0.58346	0.184423	0.111249	0.208301	0.145836	0	0.175335	0.0576292	0	0	0.0982704	0.0527296	0.45471	0.0665804	0.0919845	0.0962551	0.250989	0	0.396859	0.721605	0	0.331661	0.118651	0.126628	0.576257	0.293557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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