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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059482 ID=TCONS_00059482|Name=TCONS_00059482|organism=Clytia hemisphaerica|type=transcript|length=931bp
CACATTCAAGCCTTTCTtttcaaataaggtcaattttGTTGATGAGAGAA
TTCAGCTCATTGAAGATGATAGCATTTTATCTCGAAATATAGATATTGCT
GAAACCTTCAATGAGCACTATCATACTGTAACTGAACGCTTAGACGTTTC
TCGTTGGAATTCTGTCAATGGTGAAATCTCGGACAACGTCAATTCAGCCA
TAGATAAATTCTCTTGTCATCCAAGCATTataaaaattcgcgaaaatagg
CAAGATATTGACACGTTTGAGCTTTCATTAGTAACAAATTCAGAAACACT
CAAGGTTATAAATAGCCTGAACGATTCTAAGTCAGTCAGTGGTGATATTC
CTACTAAGATCATAAAGTTAGCCAAATTTGTTTGTGCTCCTACACTGACA
TCGTGTTTCAACCACAGTCTTGAATCACAACATTTTCCTGATAGCTTGAA
GCAAGCTGATATTATCCCGGTCCATAAAAAGAAAAGCAAGCACGACAAGG
ATAACTACAGACCCGTCAGTTTGCTCCCTTCCCCggcaaaaatctttgaa
aaactaatATCGAAACAATTAAACATTTTTCTCGAATCCTTCTTCTCTAC
TAAACTCTGTGGTTTTCGCAAACAGTATAGCACACAGAGTGCTTTACTTA
ATATGTTGCGAAAATGGCAGATGTCGCTTTCTAATTCTGAGAAAATTGGA
GCAATTCTGATGGATTTGTCTAAAGCCTTTGACTGCTTGCCTCATAATCT
TCTAATCGCTAAACTTCATGCGTATGGACTTGGAAATAAAAGCCTCGGTC
TTATCCATAGCTATCTTTCCAATAGGAAACACAGGGTCAGAGTGAGTTCA
TCTTACAGTAGTTGGCTACCTTTGCTATTTGGAGTGCCTCAAGGATCTGT
TTTAGGTCCAAtccttttcaatgtttttatc Run BLAST on NCBI protein sequence of TCONS_00059482-protein >TCONS_00059482-protein ID=TCONS_00059482-protein|Name=TCONS_00059482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
TFKPFFSNKVNFVDERIQLIEDDSILSRNIDIAETFNEHYHTVTERLDVS
RWNSVNGEISDNVNSAIDKFSCHPSIIKIRENRQDIDTFELSLVTNSETL
KVINSLNDSKSVSGDIPTKIIKLAKFVCAPTLTSCFNHSLESQHFPDSLK
QADIIPVHKKKSKHDKDNYRPVSLLPSPAKIFEKLISKQLNIFLESFFST
KLCGFRKQYSTQSALLNMLRKWQMSLSNSEKIGAILMDLSKAFDCLPHNL
LIAKLHAYGLGNKSLGLIHSYLSNRKHRVRVSSSYSSWLPLLFGVPQGSV
LGPILFNVFI Run BLAST on NCBI transcript from alignment at scaffold_327:531669..532599 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059482 ID=TCONS_00059482|Name=TCONS_00059482|organism=Clytia hemisphaerica|type=transcript|length=931bp|location=Sequence derived from alignment at scaffold_327:531669..532599 (Clytia hemisphaerica)
gataaaaacattgaaaaggaTTGGACCTAAAACAGATCCTTGAGGCACTC
CAAATAGCAAAGGTAGCCAACTACTGTAAGATGAACTCACTCTGACCCTG
TGTTTCCTATTGGAAAGATAGCTATGGATAAGACCGAGGCTTTTATTTCC
AAGTCCATACGCATGAAGTTTAGCGATTAGAAGATTATGAGGCAAGCAGT
CAAAGGCTTTAGACAAATCCATCAGAATTGCTCCAATTTTCTCAGAATTA
GAAAGCGACATCTGCCATTTTCGCAACATATTAAGTAAAGCACTCTGTGT
GCTATACTGTTTGCGAAAACCACAGAGTTTAGTAGAGAAGAAGGATTCGA
GAAAAATGTTTAATTGTTTCGATattagtttttcaaagatttttgccGGG
GAAGGGAGCAAACTGACGGGTCTGTAGTTATCCTTGTCGTGCTTGCTTTT
CTTTTTATGGACCGGGATAATATCAGCTTGCTTCAAGCTATCAGGAAAAT
GTTGTGATTCAAGACTGTGGTTGAAACACGATGTCAGTGTAGGAGCACAA
ACAAATTTGGCTAACTTTATGATCTTAGTAGGAATATCACCACTGACTGA
CTTAGAATCGTTCAGGCTATTTATAACCTTGAGTGTTTCTGAATTTGTTA
CTAATGAAAGCTCAAACGTGTCAATATCTTGcctattttcgcgaattttt
atAATGCTTGGATGACAAGAGAATTTATCTATGGCTGAATTGACGTTGTC
CGAGATTTCACCATTGACAGAATTCCAACGAGAAACGTCTAAGCGTTCAG
TTACAGTATGATAGTGCTCATTGAAGGTTTCAGCAATATCTATATTTCGA
GATAAAATGCTATCATCTTCAATGAGCTGAATTCTCTCATCAACaaaatt
gaccttatttgaaaAGAAAGGCTTGAATGTG Coding sequence (CDS) from alignment at scaffold_327:531669..532599 >TCONS_00059482 ID=TCONS_00059482|Name=TCONS_00059482|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_327:531669..532599 (Clytia hemisphaerica)
gataaaaacattgaaaaggaTTGGACCTAAAACAGATCCTTGAGGCACTC
CAAATAGCAAAGGTAGCCAACTACTGTAAGATGAACTCACTCTGACCCTG
TGTTTCCTATTGGAAAGATAGCTATGGATAAGACCGAGGCTTTTATTTCC
AAGTCCATACGCATGAAGTTTAGCGATTAGAAGATTATGAGGCAAGCAGT
CAAAGGCTTTAGACAAATCCATCAGAATTGCTCCAATTTTCTCAGAATTA
GAAAGCGACATCTGCCATTTTCGCAACATATTAAGTAAAGCACTCTGTGT
GCTATACTGTTTGCGAAAACCACAGAGTTTAGTAGAGAAGAAGGATTCGA
GAAAAATGTTTAATTGTTTCGATattagtttttcaaagatttttgccGGG
GAAGGGAGCAAACTGACGGGTCTGTAGTTATCCTTGTCGTGCTTGCTTTT
CTTTTTATGGACCGGGATAATATCAGCTTGCTTCAAGCTATCAGGAAAAT
GTTGTGATTCAAGACTGTGGTTGAAACACGATGTCAGTGTAGGAGCACAA
ACAAATTTGGCTAACTTTATGATCTTAGTAGGAATATCACCACTGACTGA
CTTAGAATCGTTCAGGCTATTTATAACCTTGAGTGTTTCTGAATTTGTTA
CTAATGAAAGCTCAAACGTGTCAATATCTTGcctattttcgcgaattttt
atAATGCTTGGATGACAAGAGAATTTATCTATGGCTGAATTGACGTTGTC
CGAGATTTCACCATTGACAGAATTCCAACGAGAAACGTCTAAGCGTTCAG
TTACAGTATGATAGTGCTCATTGAAGGTTTCAGCAATATCTATATTTCGA
GATAAAATGCTATCATCTTCAATGAGCTGAATTCTCTCATCAACaaaatt
gaccttatttgaaaAGAAAGGCTTGAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059482-exon-scaffold_327-1491911889:531669..532599 | TCONS_00059482-exon-scaffold_327-1491911889:531669..532599 | Clytia hemisphaerica | exon |
| TCONS_00059482-exon-scaffold_327-1510915933:531669..532599 | TCONS_00059482-exon-scaffold_327-1510915933:531669..532599 | Clytia hemisphaerica | exon |
| TCONS_00059482-exon-scaffold_327-1575043694:531669..532599 | TCONS_00059482-exon-scaffold_327-1575043694:531669..532599 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:531669..532599 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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