Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=transcript|length=501bp GCTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGC AAAGGAGAATTCTCATTGGAAACTATGGcacaaataacaaaaatttactt tcaTGAAAAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGgaatatt tttgcatacataCAGAGTACAATAGGACATCAAGCAAGGCACCTAGACCA ACTATTCTTGGAAGCGTAGACACTAAACTTTCgggcaaatttaaaaaaag tgctGCTATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTGNGAAAG AAGTGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGCGTACTTGATG TCTGGATGTCTACTGAAAGAATATCATCGTCCGCGGGTGTTAACGATAAg ttaactttcaaaaaactccagaTGACACGTGGCAAATGTGGAGAACAGCA AGGACGTAAACGTTGAGAAAATCCTAACGAGAATGGACCGACCATTTAGG C Run BLAST on NCBI protein sequence of TCONS_00059486-protein >TCONS_00059486-protein ID=TCONS_00059486-protein|Name=TCONS_00059486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
LNEWVHERCPVTCGKCKGEFSLETMAQITKIYFHEKASSLCGGSKSREYF CIHTEYNRTSSKAPRPTILGSVDTKLSGKFKKSAAINCGNGNPQRVLXKE VFILIVVM Run BLAST on NCBI transcript from alignment at scaffold_328:33821..37757- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=transcript|length=3937bp|location=Sequence derived from alignment at scaffold_328:33821..37757- (Clytia hemisphaerica) GCTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGC
AAAGGAGGTATACCCGCTTTTTATAAGAGTTATTACTCTCTGATGAAGCT
GGCCAAAAGTTAAGAACTAGCTCTGGTGGACGCAATTAAGCAATAATCTT
TACGAAGTAGGAAAGGAATCGCATGAAAAAATCAAATTTTCGAATTTTTT
AACATAACTCAATACTTTAAAAAATTCCTTATTTTTAGTAGGGGGAAACC
CTTATGATCCGCACCATCTTTCGTGGGACGCAACTACGTTTAATTGGTTT
GCAAATAGATGATAGTCTGTTCCAAACTCTTCTTCGCTGACTAAAAAGAT
GAAAAAAATAACGCGAAGTTCGATTTGTTACTGATAGGAAACATTCCGTG
TTCCAGACATTTTTACGCAAATCTCTGAATGTCTCTGTGGTGGAGCGTAG
CTATTTTAAGCAATCTAATTCGACTAAAGTGACTTTACATTTAACGCATC
AATGCAATGGTATCTGTCACTTATAAAAAGGGCACTCCTACGGTTTTGTT
TTCTTGGATTTTGTATCAGAAAACTGGGACAAACTAAGGCAGCCACATAA
TCTGCTCATTAAAAAAGGCACTCCTACAGAAAACTCCCAGAAAAGTGGGA
CAAACTGAGGCACAGAATCTGCTCGCTAACCAAAACAGACCGACATACGG
TAAGTTTTTTCAAAATACAAAAAAAACGCCCGTGAGTGGGTACAGCTAGA
GGCTAAAAATGATAGGATTTTGAAACTTTTTTGAGTGACCAAGCAAAAGT
TTTTTATGACCAAAAAACTCTCAACCCCCAAAAGGAGTAAACAATTTGAC
GGTCTTCAAGGTCAAATTAAACTACCAGTAGCTTGCGCTATGAAAATTAA
GTAAAAATGATTGTTCTTATTGTATAGTACCCTGGGTATCAGAGGTTCAG
TTTTCAAAGAATATATTAACCTCTGGAGACCAATAATATATATTTTATCG
CGCATGTGCCAATCTAATCACTGTAGAAAAAATCAAAAATGAAGAGCAAA
TATTCATATTAATGTCTACAGACTGTATCAGTATACAGTTTACTATTTAC
GAATTCCCCAGAAACCTCTAAGTGTAATTGAAATCTTTTACACCATCCCC
AAATGTATAACAGTAATTACTAATTTTTTGATTAAAGAAATCTCACTTTA
ATTGAATCAAAATAATAGACAGACTTTATGTTATGATTCTCTATCACTGG
GCGCGTTCACACTGGAAAGTTTACTTAATTAAATCTATCAAAGTTAAACA
AAGAGATTTATGATGGATGAATACACTGGTTTATTACAGTTCTTTGTAGG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGCTTACGACTCTTAATTAAGGAAGATCGATTAAA
AATTACAATACTACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTG
TAGTCAACAAAAGATTCTCCGAACTACATTTTTATTAAGGAAGGTCTGTA
GTGTGAACACGACCACTGACTCCTTTTACAAAGCATTGATGACTTTTTTT
AAGTTGTGTTTTCAAAGACGGGAATAAAAGTACCAACTTTGAATTTCATC
CAAGATCTTGGATGGTCGTCATTGTTACTTTTGTCTTCGTTGATTGCGCG
CTGAATAGAATCTCGATTCGTCGGCACAGCGTTAATATATGATTTTGACC
TGTGCTATTCATGGTACGTATATAGAGCATAAGATTCTAAGCAAATAAGT
ATATACAAAACTTATACTCAAACACACAAAAAAATAATTTCTGCGCAGTT
TTGTAATTGCACCCTTGCGCACTTTTGCAATTTTAGAAAAAAATCGTACA
TTTTTATCCAATACTTTTCTTTTCAGATTCGTCTTCTTTGTGATTGACCT
TATTCGAGGATACTTAAAAAGCTTTTTAAAAAGCACTTTACTTTATTCTT
AGATGATTCATTGATCAAAGAACTATTATGCTGAAAAAGTCACAAAAAGC
CGAATTTACAATGAAGAGTTATTCCGAGTTGTTCCCATTTGTACCTAAAC
AGATACGTTTTTGATATTTTTTGATTGGCTGTGCGCTTTTCATTAACTAA
AATCAGCTCTATCATGAACCTTTGTTGCTTCATTAAAGAGTTATGCCGAA
ATATGTAATGCCTAGTTATAACTCTTTCAACTTTTAAATTCGAAATAACT
TAAGTGGTTACATAGTATGAATGTATTGTAAAATACATTCATTCATTCTC
TTGAAAAGAGTAGTGATACTGATTATGACGCAAAATGATTGAAATTAAGA
GTTGGATTTTTTATCTAATATCTCAAAGGAAAATTTGGACGATTTTTTGT
CAAAATTACAAAAGTGGGCAGAAAAATTACAAATCTGCGCAGAAATTATA
AAACTGCGCATAACACCATTCAAAGTTCAAAATCATGTGAAGTCTTTTCC
AGTTTAAGCTAAATTTAACGTCAATTATACTCTAACATAATTTTGAACTT
TGAAAGCCTATACTTTTTCTATATGTTTGAGTACAAGATTTGTTGTAAAG
TATTTTTTTCTATATGTTCTATCCGATGGTACCAATCATTTGCGCTAAAT
CAAATTTTAAAAAATCCTCATTTTTTTACGTATAATTTTAGGGGTTAGGA
GTTATGTCTAAAGAATCTGTTCTCAAAAAAGTTTCAAAATCCTATCTATT
TTCGAAACAATCACATGCGGTTACGTCCTACGAAAGAAGTTCATAAGGGT
TGGTTGAACCCCCTACTAACTTGGACGATATAAATTACGAGTAGAGTGAC
TCTCTTATTGATCTCTTTGAAGTTGGTTAGTTGTTAAAAGTGAAAATCCA
TTATTTTCTTTAGAATTCTCATTGGAAACTATGGCACAAATAACAAAAAT
TTACTTTCATGAAAAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGG
AATATTTTTGCATACATACAGAGTACAATAGGACATCAAGCAAGGCACCT
AGACCAACTATTCTTGGAAGCGTAGACACTAAACTTTCGGGCAAATTTAA
AAAAAGTGCTGCTATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTG
NGAAAGAAGTGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGCGTAC
TTGATGTAAGTGCTTCTTTCTTTGTACCAGATTGTTTTATAAAAGATAAT
ATGATAATAACCTAAAAATAAATTCAAGAACAGCCCATTTTCCAGATTTT
ACAATCAGTAATAACTTATAGATTATAGTCCATTTTTAAGTCACAAATGA
AGAAAAACCCTCCAATGTCTTATCTTTATTTTCAGGTCTGGATGTCTACT
GAAAGAATATCATCGTCCGCGGGTGTTAACGATAAGTTAACTTTCAAAAA
ACTCCAGATGACACGTGGCAAATGTGGAGAACAGCAAGGACGTAAACGTT
GAGAAAATCCTAACGAGAATGGACCGACCATTTAGGC Coding sequence (CDS) from alignment at scaffold_328:33821..37757- >TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_328:33821..37757- (Clytia hemisphaerica) AATTCTCATTGGAAACTATGGCACAAATAACAAAAATTTACTTTCATGAA AAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGGAATATTTTTGCAT ACATACAGAGTACAATAGGACATCAAGCAAGGCACCTAGACCAACTATTC TTGGAAGCGTAGACACTAAACTTTCGGGCAAATTTAAAAAAAGTGCTGCT ATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTGNGAAAGAAGTGTT TATCTTAATTGTGGTAATGTGATTGAATGAATGGGTTCACGAAAGATGCC CTGTTACTTGTGGAAAATGCAAAGGAGAATTCTCATTGGAAACTATGGCA CAAATAACAAAAATTTACTTTCATGAAAAGGCTTCATCTTTATGTGGCGG CTCAAAATCACGGGAATATTTTTGCATACATACAGAGTACAATAGGACAT CAAGCAAGGCACCTAGACCAACTATTCTTGGAAGCGTAGACACTAAACTT TCGGGCAAATTTAAAAAAAGTGCTGCTATTAATTGTGGTAATGGGAATCC CCAACGCGTACTTGNGAAAGAAGTGTTTATCTTAATTGTGGTAATGTGAT TGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGCAAA GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059486-exon-scaffold_328-1575043694:37701..37757 | TCONS_00059486-exon-scaffold_328-1575043694:37701..37757 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1575043694:34153..34444 | TCONS_00059486-exon-scaffold_328-1575043694:34153..34444 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1575043694:33821..33972 | TCONS_00059486-exon-scaffold_328-1575043694:33821..33972 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1510915933:37701..37757 | TCONS_00059486-exon-scaffold_328-1510915933:37701..37757 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1510915933:34153..34444 | TCONS_00059486-exon-scaffold_328-1510915933:34153..34444 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1510915933:33821..33972 | TCONS_00059486-exon-scaffold_328-1510915933:33821..33972 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1491911889:37701..37757 | TCONS_00059486-exon-scaffold_328-1491911889:37701..37757 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1491911889:34153..34444 | TCONS_00059486-exon-scaffold_328-1491911889:34153..34444 | Clytia hemisphaerica | exon |
TCONS_00059486-exon-scaffold_328-1491911889:33821..33972 | TCONS_00059486-exon-scaffold_328-1491911889:33821..33972 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_328 | supercontig | scaffold_328:33821..37757 - |
Blast
The following BLAST results are available for this feature:
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