TCONS_00059486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059486
Unique NameTCONS_00059486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=transcript|length=501bp
GCTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGC
AAAGGAGAATTCTCATTGGAAACTATGGcacaaataacaaaaatttactt
tcaTGAAAAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGgaatatt
tttgcatacataCAGAGTACAATAGGACATCAAGCAAGGCACCTAGACCA
ACTATTCTTGGAAGCGTAGACACTAAACTTTCgggcaaatttaaaaaaag
tgctGCTATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTGNGAAAG
AAGTGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGCGTACTTGATG
TCTGGATGTCTACTGAAAGAATATCATCGTCCGCGGGTGTTAACGATAAg
ttaactttcaaaaaactccagaTGACACGTGGCAAATGTGGAGAACAGCA
AGGACGTAAACGTTGAGAAAATCCTAACGAGAATGGACCGACCATTTAGG
C
Run BLAST on NCBI

protein sequence of TCONS_00059486-protein

>TCONS_00059486-protein ID=TCONS_00059486-protein|Name=TCONS_00059486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
LNEWVHERCPVTCGKCKGEFSLETMAQITKIYFHEKASSLCGGSKSREYF
CIHTEYNRTSSKAPRPTILGSVDTKLSGKFKKSAAINCGNGNPQRVLXKE
VFILIVVM
Run BLAST on NCBI

transcript from alignment at scaffold_328:33821..37757-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=transcript|length=3937bp|location=Sequence derived from alignment at scaffold_328:33821..37757- (Clytia hemisphaerica)
GCTTGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGC
AAAGGAGGTATACCCGCTTTTTATAAGAGTTATTACTCTCTGATGAAGCT
GGCCAAAAGTTAAGAACTAGCTCTGGTGGACGCAATTAAGCAATAATCTT
TACGAAGTAGGAAAGGAATCGCATGAAAAAATCAAATTTTCGAATTTTTT
AACATAACTCAATACTTTAAAAAATTCCTTATTTTTAGTAGGGGGAAACC
CTTATGATCCGCACCATCTTTCGTGGGACGCAACTACGTTTAATTGGTTT
GCAAATAGATGATAGTCTGTTCCAAACTCTTCTTCGCTGACTAAAAAGAT
GAAAAAAATAACGCGAAGTTCGATTTGTTACTGATAGGAAACATTCCGTG
TTCCAGACATTTTTACGCAAATCTCTGAATGTCTCTGTGGTGGAGCGTAG
CTATTTTAAGCAATCTAATTCGACTAAAGTGACTTTACATTTAACGCATC
AATGCAATGGTATCTGTCACTTATAAAAAGGGCACTCCTACGGTTTTGTT
TTCTTGGATTTTGTATCAGAAAACTGGGACAAACTAAGGCAGCCACATAA
TCTGCTCATTAAAAAAGGCACTCCTACAGAAAACTCCCAGAAAAGTGGGA
CAAACTGAGGCACAGAATCTGCTCGCTAACCAAAACAGACCGACATACGG
TAAGTTTTTTCAAAATACAAAAAAAACGCCCGTGAGTGGGTACAGCTAGA
GGCTAAAAATGATAGGATTTTGAAACTTTTTTGAGTGACCAAGCAAAAGT
TTTTTATGACCAAAAAACTCTCAACCCCCAAAAGGAGTAAACAATTTGAC
GGTCTTCAAGGTCAAATTAAACTACCAGTAGCTTGCGCTATGAAAATTAA
GTAAAAATGATTGTTCTTATTGTATAGTACCCTGGGTATCAGAGGTTCAG
TTTTCAAAGAATATATTAACCTCTGGAGACCAATAATATATATTTTATCG
CGCATGTGCCAATCTAATCACTGTAGAAAAAATCAAAAATGAAGAGCAAA
TATTCATATTAATGTCTACAGACTGTATCAGTATACAGTTTACTATTTAC
GAATTCCCCAGAAACCTCTAAGTGTAATTGAAATCTTTTACACCATCCCC
AAATGTATAACAGTAATTACTAATTTTTTGATTAAAGAAATCTCACTTTA
ATTGAATCAAAATAATAGACAGACTTTATGTTATGATTCTCTATCACTGG
GCGCGTTCACACTGGAAAGTTTACTTAATTAAATCTATCAAAGTTAAACA
AAGAGATTTATGATGGATGAATACACTGGTTTATTACAGTTCTTTGTAGG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGCTTACGACTCTTAATTAAGGAAGATCGATTAAA
AATTACAATACTACGCGTTCGACTCTTTGTTAAATGCACGTTCTGTATTG
TAGTCAACAAAAGATTCTCCGAACTACATTTTTATTAAGGAAGGTCTGTA
GTGTGAACACGACCACTGACTCCTTTTACAAAGCATTGATGACTTTTTTT
AAGTTGTGTTTTCAAAGACGGGAATAAAAGTACCAACTTTGAATTTCATC
CAAGATCTTGGATGGTCGTCATTGTTACTTTTGTCTTCGTTGATTGCGCG
CTGAATAGAATCTCGATTCGTCGGCACAGCGTTAATATATGATTTTGACC
TGTGCTATTCATGGTACGTATATAGAGCATAAGATTCTAAGCAAATAAGT
ATATACAAAACTTATACTCAAACACACAAAAAAATAATTTCTGCGCAGTT
TTGTAATTGCACCCTTGCGCACTTTTGCAATTTTAGAAAAAAATCGTACA
TTTTTATCCAATACTTTTCTTTTCAGATTCGTCTTCTTTGTGATTGACCT
TATTCGAGGATACTTAAAAAGCTTTTTAAAAAGCACTTTACTTTATTCTT
AGATGATTCATTGATCAAAGAACTATTATGCTGAAAAAGTCACAAAAAGC
CGAATTTACAATGAAGAGTTATTCCGAGTTGTTCCCATTTGTACCTAAAC
AGATACGTTTTTGATATTTTTTGATTGGCTGTGCGCTTTTCATTAACTAA
AATCAGCTCTATCATGAACCTTTGTTGCTTCATTAAAGAGTTATGCCGAA
ATATGTAATGCCTAGTTATAACTCTTTCAACTTTTAAATTCGAAATAACT
TAAGTGGTTACATAGTATGAATGTATTGTAAAATACATTCATTCATTCTC
TTGAAAAGAGTAGTGATACTGATTATGACGCAAAATGATTGAAATTAAGA
GTTGGATTTTTTATCTAATATCTCAAAGGAAAATTTGGACGATTTTTTGT
CAAAATTACAAAAGTGGGCAGAAAAATTACAAATCTGCGCAGAAATTATA
AAACTGCGCATAACACCATTCAAAGTTCAAAATCATGTGAAGTCTTTTCC
AGTTTAAGCTAAATTTAACGTCAATTATACTCTAACATAATTTTGAACTT
TGAAAGCCTATACTTTTTCTATATGTTTGAGTACAAGATTTGTTGTAAAG
TATTTTTTTCTATATGTTCTATCCGATGGTACCAATCATTTGCGCTAAAT
CAAATTTTAAAAAATCCTCATTTTTTTACGTATAATTTTAGGGGTTAGGA
GTTATGTCTAAAGAATCTGTTCTCAAAAAAGTTTCAAAATCCTATCTATT
TTCGAAACAATCACATGCGGTTACGTCCTACGAAAGAAGTTCATAAGGGT
TGGTTGAACCCCCTACTAACTTGGACGATATAAATTACGAGTAGAGTGAC
TCTCTTATTGATCTCTTTGAAGTTGGTTAGTTGTTAAAAGTGAAAATCCA
TTATTTTCTTTAGAATTCTCATTGGAAACTATGGCACAAATAACAAAAAT
TTACTTTCATGAAAAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGG
AATATTTTTGCATACATACAGAGTACAATAGGACATCAAGCAAGGCACCT
AGACCAACTATTCTTGGAAGCGTAGACACTAAACTTTCGGGCAAATTTAA
AAAAAGTGCTGCTATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTG
NGAAAGAAGTGTTTATCTTAATTGTGGTAATGTGAATCCCCAACGCGTAC
TTGATGTAAGTGCTTCTTTCTTTGTACCAGATTGTTTTATAAAAGATAAT
ATGATAATAACCTAAAAATAAATTCAAGAACAGCCCATTTTCCAGATTTT
ACAATCAGTAATAACTTATAGATTATAGTCCATTTTTAAGTCACAAATGA
AGAAAAACCCTCCAATGTCTTATCTTTATTTTCAGGTCTGGATGTCTACT
GAAAGAATATCATCGTCCGCGGGTGTTAACGATAAGTTAACTTTCAAAAA
ACTCCAGATGACACGTGGCAAATGTGGAGAACAGCAAGGACGTAAACGTT
GAGAAAATCCTAACGAGAATGGACCGACCATTTAGGC

Coding sequence (CDS) from alignment at scaffold_328:33821..37757-

>TCONS_00059486 ID=TCONS_00059486|Name=TCONS_00059486|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at scaffold_328:33821..37757- (Clytia hemisphaerica)
AATTCTCATTGGAAACTATGGCACAAATAACAAAAATTTACTTTCATGAA
AAGGCTTCATCTTTATGTGGCGGCTCAAAATCACGGGAATATTTTTGCAT
ACATACAGAGTACAATAGGACATCAAGCAAGGCACCTAGACCAACTATTC
TTGGAAGCGTAGACACTAAACTTTCGGGCAAATTTAAAAAAAGTGCTGCT
ATTAATTGTGGTAATGGGAATCCCCAACGCGTACTTGNGAAAGAAGTGTT
TATCTTAATTGTGGTAATGTGATTGAATGAATGGGTTCACGAAAGATGCC
CTGTTACTTGTGGAAAATGCAAAGGAGAATTCTCATTGGAAACTATGGCA
CAAATAACAAAAATTTACTTTCATGAAAAGGCTTCATCTTTATGTGGCGG
CTCAAAATCACGGGAATATTTTTGCATACATACAGAGTACAATAGGACAT
CAAGCAAGGCACCTAGACCAACTATTCTTGGAAGCGTAGACACTAAACTT
TCGGGCAAATTTAAAAAAAGTGCTGCTATTAATTGTGGTAATGGGAATCC
CCAACGCGTACTTGNGAAAGAAGTGTTTATCTTAATTGTGGTAATGTGAT
TGAATGAATGGGTTCACGAAAGATGCCCTGTTACTTGTGGAAAATGCAAA
GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037448XLOC_037448Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059486-proteinTCONS_00059486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059486-exon-scaffold_328-1575043694:37701..37757TCONS_00059486-exon-scaffold_328-1575043694:37701..37757Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1575043694:34153..34444TCONS_00059486-exon-scaffold_328-1575043694:34153..34444Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1575043694:33821..33972TCONS_00059486-exon-scaffold_328-1575043694:33821..33972Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1510915933:37701..37757TCONS_00059486-exon-scaffold_328-1510915933:37701..37757Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1510915933:34153..34444TCONS_00059486-exon-scaffold_328-1510915933:34153..34444Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1510915933:33821..33972TCONS_00059486-exon-scaffold_328-1510915933:33821..33972Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1491911889:37701..37757TCONS_00059486-exon-scaffold_328-1491911889:37701..37757Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1491911889:34153..34444TCONS_00059486-exon-scaffold_328-1491911889:34153..34444Clytia hemisphaericaexon
TCONS_00059486-exon-scaffold_328-1491911889:33821..33972TCONS_00059486-exon-scaffold_328-1491911889:33821..33972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:33821..37757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.118481	0.137568	0	0	0	0	0	0	0	0	0	25.251	13.7063	0	0	0	0.408335	30.0276	41.9946	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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