TCONS_00059488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059488
Unique NameTCONS_00059488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059488 ID=TCONS_00059488|Name=TCONS_00059488|organism=Clytia hemisphaerica|type=transcript|length=363bp
CAGGAAAATGATGACGTAAGAGAGGAAGAAAGAAATTATGCAAGCGGAGA
AGAATTGGATAATGAAGAAAACACTGAAAATGTTTAGAGTGGTGGAGCAC
CTATTCAGCCAATAGAACCTTTAATATCTGATAATGAACTAAGTAGNGGA
GCACCTATTCAGCCAATAGAACCTTTAATATCTGATAATGAACTAAGTAG
GAGAATACGATCCCTCAATGAAAAACAGCGGGAAATGTTTGACTACATTG
TAAAATGGTCTAAAAAGACCTCGCAAAACTTACGAACAAGTACTGCTACG
AAGCCCGATCCGTTTTATATCTTTCTAACTGGTAGTGCAGGTTGTGGTAA
ATCGTACACTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_328:25071..25433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059488 ID=TCONS_00059488|Name=TCONS_00059488|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at scaffold_328:25071..25433 (Clytia hemisphaerica)
TAAAGTGTACGATTTACCACAACCTGCACTACCAGTTAGAAAGATATAAA
ACGGATCGGGCTTCGTAGCAGTACTTGTTCGTAAGTTTTGCGAGGTCTTT
TTAGACCATTTTACAATGTAGTCAAACATTTCCCGCTGTTTTTCATTGAG
GGATCGTATTCTCCTACTTAGTTCATTATCAGATATTAAAGGTTCTATTG
GCTGAATAGGTGCTCCNCTACTTAGTTCATTATCAGATATTAAAGGTTCT
ATTGGCTGAATAGGTGCTCCACCACTCTAAACATTTTCAGTGTTTTCTTC
ATTATCCAATTCTTCTCCGCTTGCATAATTTCTTTCTTCCTCTCTTACGT
CATCATTTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037450XLOC_037450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059488-exon-scaffold_328-1491911889:25071..25433TCONS_00059488-exon-scaffold_328-1491911889:25071..25433Clytia hemisphaericaexon
TCONS_00059488-exon-scaffold_328-1510915933:25071..25433TCONS_00059488-exon-scaffold_328-1510915933:25071..25433Clytia hemisphaericaexon
TCONS_00059488-exon-scaffold_328-1575043694:25071..25433TCONS_00059488-exon-scaffold_328-1575043694:25071..25433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:25071..25433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.46075	0.449304	0.260842	0.255193	0	0.245498	0.296183	0.83185	0	0.480929	0	0.767142	0	0.795577	0.784887	0.421152	0	0.531779	0	0.512527	0.445479	0	0.264143	0.240145	0.494687	0.662244	0	0.337126	0.511396	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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