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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059492 ID=TCONS_00059492|Name=TCONS_00059492|organism=Clytia hemisphaerica|type=transcript|length=308bp
AAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTGACTAAATT
AGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCATGTGACAGT
ACTCTCTGGTAAAGAGTtgttaattcttttttattctttttctaGTGATA
ATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAG
GAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGcGACCATGGGTGG
AGCTATCGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATTCGAATTTC
TATTCTTC Run BLAST on NCBI transcript from alignment at scaffold_329:17331..18655+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059492 ID=TCONS_00059492|Name=TCONS_00059492|organism=Clytia hemisphaerica|type=transcript|length=1325bp|location=Sequence derived from alignment at scaffold_329:17331..18655+ (Clytia hemisphaerica)
AAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTGACTAAATT
AGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCATGTGACAGT
ACTCTCTGGTAAAGAGTtgttaattcttttttattctttttctaGTGATA
ATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTGAGACAGAG
GAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGGTAAatttatacc
ttatcggccaaaacttagtcggccttaattttagttggcccaaattttta
gctggccctaattttagtcaccaagccaaaatttagtcacttttgGCCGA
TAATGTAATCAATTTTCTTCGCTACGAATATTGTGTAGTTTACCTTTCAA
CAAATCAAATGATTATTTCAAAGAGACCTCTGTGTTACAGACCCAGTGGG
ACCCCAACATCACTGAAAATTCtagccaaaatttcgtccccatcCCCATT
GAGGAAAATACCCCACAGTTTCAGACCCACTGGGAAGTTGACTTTGTTTT
TACGCCCATTTGAGATTCAATGAAAAAACTGCACTGAAAACCATCCCCAG
TAGACTTTTTGACCTGGAATCAATAGGATTTCTTTCTCTATTGAGATATA
acaatacacccccttctcacaggccCACTAAGAAcctcttcccactggaa
aaattgcccAAAATGTGTTCGTTCTCACCTTTTATTGCGTCACACCCTGG
TAAGGAAATATTTTAGTACCCTTAGACTTCTTTCGGGTAATATTATGGTG
CGAATAGTGGTTTACTTAATTGTATATTGGTCATTCGCATTTAGgaacac
ctccttctcacagacccggcaGGATTGTTTCAGCCCAAACTCGATTGGGA
TTGATATTAGCCAGAagattcagtggggatagataaaatagcacaatatt
ttgcagtgaggattcgctttctaattattttcagcagggacaaaaattgg
ggttcaattttccactggggacaatattttggccaatttttccagtgggt
ctgtgagaagtgggtgtggttttgagttttgtttaagagggttttaggtt
taaaactaaTAAAGATATTGAAATGAATATAAAACAttcatgaaaattat
ttaaacgattttaaaatgtcaaaatgtaGACAAGCTTAGCTACTATAATG
GGCCATTTCTCTAATGTTCCcttatggaatttttttccaaaatctttctt
tcagcGACCATGGGTGGAGCTATCGGGCTTGGTCTCGGATTCAGTTTCAT
CACCGGATTCGAATTTCTATTCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059492-exon-scaffold_329-1491911889:17331..17567 | TCONS_00059492-exon-scaffold_329-1491911889:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059492-exon-scaffold_329-1510915933:17331..17567 | TCONS_00059492-exon-scaffold_329-1510915933:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059492-exon-scaffold_329-1575043694:17331..17567 | TCONS_00059492-exon-scaffold_329-1575043694:17331..17567 | Clytia hemisphaerica | exon |
| TCONS_00059492-exon-scaffold_329-1491911889:18585..18655 | TCONS_00059492-exon-scaffold_329-1491911889:18585..18655 | Clytia hemisphaerica | exon |
| TCONS_00059492-exon-scaffold_329-1510915933:18585..18655 | TCONS_00059492-exon-scaffold_329-1510915933:18585..18655 | Clytia hemisphaerica | exon |
| TCONS_00059492-exon-scaffold_329-1575043694:18585..18655 | TCONS_00059492-exon-scaffold_329-1575043694:18585..18655 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:17331..18655 + |
Blast
The following BLAST results are available for this feature:
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